Wall clock time and date at job start Tue Mar 31 2020 03:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.64076 * 2 1 4 4 C 1.54328 * 110.87250 * 236.75631 * 2 1 3 5 5 N 1.47019 * 107.26954 * 219.37432 * 4 2 1 6 6 C 1.36946 * 125.64345 * 178.98939 * 5 4 2 7 7 H 1.07999 * 119.99557 * 174.78250 * 6 5 4 8 8 C 1.38806 * 120.00004 * 354.77740 * 6 5 4 9 9 N 1.31612 * 120.00403 * 7.05747 * 8 6 5 10 10 Si 1.86799 * 119.99652 * 187.05539 * 8 6 5 11 11 H 1.48502 * 109.47251 * 94.99360 * 10 8 6 12 12 H 1.48510 * 109.47237 * 214.98587 * 10 8 6 13 13 H 1.48493 * 109.47749 * 334.98967 * 10 8 6 14 14 C 1.47425 * 108.70628 * 358.93417 * 5 4 2 15 15 C 1.54912 * 104.82973 * 24.13606 * 14 5 4 16 16 H 1.08993 * 111.00587 * 81.05931 * 15 14 5 17 17 C 1.52997 * 111.03530 * 204.90287 * 15 14 5 18 18 N 1.46500 * 109.46954 * 290.39179 * 17 15 14 19 19 C 1.34773 * 120.00399 * 180.02562 * 18 17 15 20 20 O 1.21612 * 119.99639 * 359.97438 * 19 18 17 21 21 C 1.47424 * 120.00309 * 180.02562 * 19 18 17 22 22 C 1.41287 * 126.41590 * 0.02562 * 21 19 18 23 23 N 1.30452 * 108.02647 * 179.97438 * 22 21 19 24 24 N 1.39933 * 108.89441 * 359.97438 * 23 22 21 25 25 C 1.46504 * 125.75339 * 180.02562 * 24 23 22 26 26 C 1.34264 * 108.49207 * 359.75217 * 24 23 22 27 27 H 1.08997 * 109.46503 * 296.85462 * 1 2 3 28 28 H 1.08996 * 109.47149 * 56.85479 * 1 2 3 29 29 H 1.09004 * 109.46772 * 176.86000 * 1 2 3 30 30 H 1.09002 * 109.87938 * 338.79200 * 4 2 1 31 31 H 1.08994 * 109.88316 * 99.79626 * 4 2 1 32 32 H 0.97000 * 120.00448 * 180.02562 * 9 8 6 33 33 H 1.08993 * 110.37045 * 265.29353 * 14 5 4 34 34 H 1.09002 * 110.36114 * 142.96925 * 14 5 4 35 35 H 1.09002 * 109.47607 * 50.39048 * 17 15 14 36 36 H 1.08995 * 109.47227 * 170.39643 * 17 15 14 37 37 H 0.97000 * 119.99743 * 0.02562 * 18 17 15 38 38 H 1.08003 * 125.98700 * 359.97438 * 22 21 19 39 39 H 1.08998 * 109.46478 * 89.97787 * 25 24 23 40 40 H 1.08998 * 109.47183 * 209.97785 * 25 24 23 41 41 H 1.08998 * 109.46789 * 329.98046 * 25 24 23 42 42 H 1.08002 * 126.28843 * 180.24495 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0799 -0.7905 -1.2060 5 7 3.2494 -1.5470 -0.7355 6 6 4.0126 -2.3916 -1.4968 7 1 4.9037 -2.8374 -1.0801 8 6 3.6409 -2.6747 -2.8038 9 7 2.6374 -2.0276 -3.3575 10 14 4.5649 -3.9741 -3.7770 11 1 3.8536 -5.2731 -3.6682 12 1 4.6362 -3.5668 -5.2033 13 1 5.9395 -4.1155 -3.2333 14 6 3.4653 -1.2447 0.6912 15 6 2.0790 -0.7935 1.2151 16 1 1.4470 -1.6530 1.4382 17 6 2.2229 0.1108 2.4408 18 7 2.7012 -0.6799 3.5776 19 6 2.9024 -0.0894 4.7722 20 8 2.6873 1.1000 4.9064 21 6 3.3843 -0.8850 5.9159 22 6 3.6775 -2.2671 5.9121 23 7 4.0758 -2.5986 7.1093 24 7 4.0573 -1.4612 7.9242 25 6 4.4355 -1.4154 9.3388 26 6 3.6402 -0.4177 7.1894 27 1 -0.3632 0.4642 0.9168 28 1 -0.3633 0.5619 -0.8604 29 1 -0.3633 -1.0262 -0.0563 30 1 1.3190 -1.4772 -1.5771 31 1 2.3749 -0.1016 -1.9974 32 1 2.3774 -2.2257 -4.2707 33 1 4.1930 -0.4410 0.8028 34 1 3.7994 -2.1365 1.2215 35 1 2.9372 0.9052 2.2246 36 1 1.2551 0.5489 2.6847 37 1 2.8731 -1.6285 3.4704 38 1 3.5877 -2.9326 5.0662 39 1 5.5002 -1.1979 9.4233 40 1 3.8642 -0.6357 9.8426 41 1 4.2235 -2.3786 9.8029 42 1 3.5235 0.5997 7.5326 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092453685.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:12 Heat of formation + Delta-G solvation = 60.047239 kcal Electronic energy + Delta-G solvation = -22979.943228 eV Core-core repulsion = 19576.257951 eV Total energy + Delta-G solvation = -3403.685277 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.54592 -39.22429 -37.84710 -34.58078 -33.71027 -32.84575 -30.71288 -30.64319 -29.27800 -27.35156 -25.91568 -25.04448 -23.25451 -22.25643 -21.21015 -20.27162 -19.91362 -19.18737 -18.02816 -16.75227 -16.03486 -15.93169 -15.76024 -15.09756 -14.80384 -14.66982 -14.19407 -13.77214 -13.58927 -13.28161 -13.16960 -12.95412 -12.88462 -12.79827 -12.47968 -11.78247 -11.63077 -11.33478 -11.29349 -11.17999 -10.78487 -10.75374 -10.14266 -9.97766 -9.93986 -9.87054 -9.85917 -9.63297 -9.51618 -9.04487 -8.71377 -8.55425 -6.79775 -5.70142 -3.02240 1.34430 2.01097 2.06812 3.39651 3.41468 3.46810 3.48769 3.50331 4.16634 4.50242 4.51468 4.68876 4.72337 4.96765 4.98972 5.16822 5.22162 5.26776 5.37010 5.54515 5.56235 5.61001 5.81677 5.93144 6.07688 6.15006 6.18935 6.23616 6.33829 6.51709 6.52384 6.56317 6.62112 6.67209 6.81449 6.99531 7.27195 7.59553 7.68156 7.69627 7.86666 8.28664 8.39048 9.24381 9.85094 10.51865 11.41888 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020377 B = 0.003251 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.743542 B = 8610.933142 C = 9724.177541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.067 0.933 4 C 0.183 3.817 5 N -0.607 5.607 6 C -0.228 4.228 7 H 0.077 0.923 8 C -0.007 4.007 9 N -0.919 5.919 10 Si 0.909 3.091 11 H -0.289 1.289 12 H -0.292 1.292 13 H -0.281 1.281 14 C 0.142 3.858 15 C -0.113 4.113 16 H 0.080 0.920 17 C 0.135 3.865 18 N -0.720 5.720 19 C 0.593 3.407 20 O -0.557 6.557 21 C -0.290 4.290 22 C 0.084 3.916 23 N -0.299 5.299 24 N -0.368 5.368 25 C 0.097 3.903 26 C 0.125 3.875 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.039 0.961 32 H 0.252 0.748 33 H 0.019 0.981 34 H 0.036 0.964 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.400 0.600 38 H 0.192 0.808 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.707 2.584 22.188 22.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.058 3.942 5 N -0.333 5.333 6 C -0.357 4.357 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.567 5.567 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.015 3.985 15 C -0.133 4.133 16 H 0.099 0.901 17 C 0.012 3.988 18 N -0.370 5.370 19 C 0.380 3.620 20 O -0.436 6.436 21 C -0.305 4.305 22 C -0.104 4.104 23 N -0.119 5.119 24 N -0.147 5.147 25 C -0.044 4.044 26 C -0.026 4.026 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.234 0.766 38 H 0.209 0.791 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -0.401 2.393 22.948 23.076 hybrid contribution 0.331 -0.495 -1.165 1.309 sum -0.070 1.899 21.782 21.865 Atomic orbital electron populations 1.21691 0.95333 1.01601 1.00544 1.22432 0.95132 0.99109 0.96329 0.91445 1.21222 0.89194 0.93066 0.90735 1.44470 1.32576 1.51712 1.04503 1.19057 1.04297 1.18491 0.93831 0.90481 1.24810 0.98524 0.99928 0.97117 1.69975 1.30153 1.42771 1.13790 0.86138 0.78916 0.81578 0.79389 1.21655 1.21817 1.20661 1.21583 0.93070 0.97050 0.86759 1.22675 0.99365 0.98113 0.93121 0.90129 1.21376 0.99389 0.93954 0.84119 1.45826 1.67976 1.13194 1.09992 1.17202 0.76769 0.86273 0.81767 1.90758 1.53281 1.15287 1.84320 1.20334 1.19876 0.94682 0.95600 1.24149 0.96015 0.94530 0.95725 1.77200 1.24610 1.07324 1.02759 1.48434 1.49865 1.05945 1.10414 1.21981 1.01845 1.04980 0.75559 1.22967 0.94546 0.94220 0.90905 0.93622 0.92824 0.92727 0.93192 0.94278 0.93787 0.96347 0.94554 0.91408 0.91649 0.76552 0.79125 0.90232 0.89046 0.88867 0.79506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 9.17 37.16 0.34 -1.75 16 2 C -0.11 -2.00 3.01 -88.78 -0.27 -2.26 16 3 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 4 C 0.18 4.37 4.98 -3.06 -0.02 4.35 16 5 N -0.61 -15.32 3.39 -170.07 -0.58 -15.89 16 6 C -0.23 -6.35 10.27 -15.06 -0.15 -6.50 16 7 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 8 C -0.01 -0.21 5.48 -17.44 -0.10 -0.31 16 9 N -0.92 -26.99 10.36 55.49 0.57 -26.42 16 10 Si 0.91 22.08 29.56 -169.99 -5.02 17.06 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 14 C 0.14 2.83 6.56 -2.53 -0.02 2.81 16 15 C -0.11 -1.86 2.51 -88.47 -0.22 -2.09 16 16 H 0.08 1.31 8.05 -51.93 -0.42 0.89 16 17 C 0.14 1.98 5.13 -4.04 -0.02 1.96 16 18 N -0.72 -9.45 5.44 -61.39 -0.33 -9.79 16 19 C 0.59 8.39 7.81 -12.52 -0.10 8.29 16 20 O -0.56 -9.65 16.90 5.27 0.09 -9.56 16 21 C -0.29 -3.43 6.13 -105.07 -0.64 -4.08 16 22 C 0.08 0.90 11.50 -16.98 -0.20 0.71 16 23 N -0.30 -3.42 12.50 30.86 0.39 -3.03 16 24 N -0.37 -3.36 3.98 -67.60 -0.27 -3.63 16 25 C 0.10 0.43 11.44 59.85 0.68 1.11 16 26 C 0.12 1.23 11.30 -16.56 -0.19 1.04 16 27 H 0.04 0.61 8.13 -51.93 -0.42 0.19 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 30 H 0.05 1.32 6.93 -51.93 -0.36 0.96 16 31 H 0.04 1.05 7.61 -51.93 -0.40 0.65 16 32 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.02 0.38 7.96 -51.93 -0.41 -0.03 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.07 8.04 -51.93 -0.42 0.65 16 36 H 0.07 0.95 8.13 -51.93 -0.42 0.52 16 37 H 0.40 4.49 7.39 -40.82 -0.30 4.19 16 38 H 0.19 1.56 7.50 -52.48 -0.39 1.17 16 39 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 41 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.19 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 349.50 15.07 5.27 5.27 Total: -1.00 -34.99 349.50 -7.24 -42.23 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.46 Total: 0.47 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -0.89 Total: 3.29 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: -0.22 Total: -58.76 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.99 -7.24 -42.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092453685.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.280 kcal (2) G-P(sol) polarization free energy of solvation -34.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds