Wall clock time and date at job start Tue Mar 31 2020 03:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.64076 * 2 1 4 4 C 1.54328 * 110.87250 * 236.75631 * 2 1 3 5 5 N 1.47019 * 107.26954 * 219.37432 * 4 2 1 6 6 C 1.36946 * 125.64345 * 178.98939 * 5 4 2 7 7 H 1.07999 * 119.99557 * 174.78250 * 6 5 4 8 8 C 1.38806 * 120.00004 * 354.77740 * 6 5 4 9 9 N 1.31612 * 120.00403 * 7.05747 * 8 6 5 10 10 Si 1.86799 * 119.99652 * 187.05539 * 8 6 5 11 11 H 1.48502 * 109.47251 * 94.99360 * 10 8 6 12 12 H 1.48510 * 109.47237 * 214.98587 * 10 8 6 13 13 H 1.48493 * 109.47749 * 334.98967 * 10 8 6 14 14 C 1.47425 * 108.70628 * 358.93417 * 5 4 2 15 15 C 1.54912 * 104.82973 * 24.13606 * 14 5 4 16 16 H 1.08993 * 111.00587 * 81.05931 * 15 14 5 17 17 C 1.52997 * 111.03530 * 204.90287 * 15 14 5 18 18 N 1.46500 * 109.46954 * 290.39179 * 17 15 14 19 19 C 1.34773 * 120.00399 * 180.02562 * 18 17 15 20 20 O 1.21612 * 119.99639 * 359.97438 * 19 18 17 21 21 C 1.47424 * 120.00309 * 180.02562 * 19 18 17 22 22 C 1.41287 * 126.41590 * 0.02562 * 21 19 18 23 23 N 1.30452 * 108.02647 * 179.97438 * 22 21 19 24 24 N 1.39933 * 108.89441 * 359.97438 * 23 22 21 25 25 C 1.46504 * 125.75339 * 180.02562 * 24 23 22 26 26 C 1.34264 * 108.49207 * 359.75217 * 24 23 22 27 27 H 1.08997 * 109.46503 * 296.85462 * 1 2 3 28 28 H 1.08996 * 109.47149 * 56.85479 * 1 2 3 29 29 H 1.09004 * 109.46772 * 176.86000 * 1 2 3 30 30 H 1.09002 * 109.87938 * 338.79200 * 4 2 1 31 31 H 1.08994 * 109.88316 * 99.79626 * 4 2 1 32 32 H 0.97000 * 120.00448 * 180.02562 * 9 8 6 33 33 H 1.08993 * 110.37045 * 265.29353 * 14 5 4 34 34 H 1.09002 * 110.36114 * 142.96925 * 14 5 4 35 35 H 1.09002 * 109.47607 * 50.39048 * 17 15 14 36 36 H 1.08995 * 109.47227 * 170.39643 * 17 15 14 37 37 H 0.97000 * 119.99743 * 0.02562 * 18 17 15 38 38 H 1.08003 * 125.98700 * 359.97438 * 22 21 19 39 39 H 1.08998 * 109.46478 * 89.97787 * 25 24 23 40 40 H 1.08998 * 109.47183 * 209.97785 * 25 24 23 41 41 H 1.08998 * 109.46789 * 329.98046 * 25 24 23 42 42 H 1.08002 * 126.28843 * 180.24495 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0799 -0.7905 -1.2060 5 7 3.2494 -1.5470 -0.7355 6 6 4.0126 -2.3916 -1.4968 7 1 4.9037 -2.8374 -1.0801 8 6 3.6409 -2.6747 -2.8038 9 7 2.6374 -2.0276 -3.3575 10 14 4.5649 -3.9741 -3.7770 11 1 3.8536 -5.2731 -3.6682 12 1 4.6362 -3.5668 -5.2033 13 1 5.9395 -4.1155 -3.2333 14 6 3.4653 -1.2447 0.6912 15 6 2.0790 -0.7935 1.2151 16 1 1.4470 -1.6530 1.4382 17 6 2.2229 0.1108 2.4408 18 7 2.7012 -0.6799 3.5776 19 6 2.9024 -0.0894 4.7722 20 8 2.6873 1.1000 4.9064 21 6 3.3843 -0.8850 5.9159 22 6 3.6775 -2.2671 5.9121 23 7 4.0758 -2.5986 7.1093 24 7 4.0573 -1.4612 7.9242 25 6 4.4355 -1.4154 9.3388 26 6 3.6402 -0.4177 7.1894 27 1 -0.3632 0.4642 0.9168 28 1 -0.3633 0.5619 -0.8604 29 1 -0.3633 -1.0262 -0.0563 30 1 1.3190 -1.4772 -1.5771 31 1 2.3749 -0.1016 -1.9974 32 1 2.3774 -2.2257 -4.2707 33 1 4.1930 -0.4410 0.8028 34 1 3.7994 -2.1365 1.2215 35 1 2.9372 0.9052 2.2246 36 1 1.2551 0.5489 2.6847 37 1 2.8731 -1.6285 3.4704 38 1 3.5877 -2.9326 5.0662 39 1 5.5002 -1.1979 9.4233 40 1 3.8642 -0.6357 9.8426 41 1 4.2235 -2.3786 9.8029 42 1 3.5235 0.5997 7.5326 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092453685.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:12 Heat of formation + Delta-G solvation = 35.695764 kcal Electronic energy + Delta-G solvation = -22980.999187 eV Core-core repulsion = 19576.257951 eV Total energy + Delta-G solvation = -3404.741236 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.31476 -40.41875 -39.35629 -35.96975 -34.72321 -34.21014 -32.51737 -31.57508 -30.57591 -28.18728 -27.64015 -26.48200 -24.66289 -23.43695 -21.99447 -21.52345 -21.36631 -20.55392 -19.06414 -18.63009 -17.20715 -16.80614 -16.65245 -16.54946 -16.12028 -15.68688 -15.56379 -15.43021 -14.69095 -14.59649 -14.33423 -14.10267 -13.86109 -13.52945 -13.44094 -13.38162 -13.19505 -13.04060 -12.83324 -12.65681 -12.37020 -12.12741 -11.89222 -11.81858 -11.52279 -11.35342 -11.31741 -10.83451 -10.65928 -10.57310 -10.09273 -9.60498 -8.85804 -7.83456 -5.17512 0.56306 1.16862 1.47214 1.47475 1.48731 1.57605 2.35989 2.50881 2.51875 3.34341 3.53900 3.66058 3.83175 3.84154 3.98487 4.00477 4.15297 4.18946 4.42827 4.44054 4.54747 4.59622 4.64892 4.71530 4.73070 4.79818 4.89214 4.92437 5.02163 5.13096 5.21406 5.38108 5.40338 5.45526 5.51604 5.56877 5.74697 5.85431 5.89435 6.23240 6.50186 6.68878 7.13198 7.33950 7.81284 8.46352 9.27375 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020377 B = 0.003251 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.743542 B = 8610.933142 C = 9724.177541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 H 0.074 0.926 4 C 0.190 3.810 5 N -0.629 5.629 6 C -0.241 4.241 7 H 0.082 0.918 8 C -0.066 4.066 9 N -0.950 5.950 10 Si 0.976 3.024 11 H -0.286 1.286 12 H -0.297 1.297 13 H -0.268 1.268 14 C 0.137 3.863 15 C -0.090 4.090 16 H 0.090 0.910 17 C 0.148 3.852 18 N -0.714 5.714 19 C 0.595 3.405 20 O -0.593 6.593 21 C -0.317 4.317 22 C 0.084 3.916 23 N -0.327 5.327 24 N -0.363 5.363 25 C 0.086 3.914 26 C 0.134 3.866 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.018 0.982 31 H -0.004 1.004 32 H 0.246 0.754 33 H 0.016 0.984 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.410 0.590 38 H 0.209 0.791 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.508 2.296 24.676 24.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.121 4.121 3 H 0.092 0.908 4 C 0.065 3.935 5 N -0.355 5.355 6 C -0.370 4.370 7 H 0.100 0.900 8 C -0.259 4.259 9 N -0.599 5.599 10 Si 0.804 3.196 11 H -0.213 1.213 12 H -0.224 1.224 13 H -0.193 1.193 14 C 0.012 3.988 15 C -0.110 4.110 16 H 0.108 0.892 17 C 0.024 3.976 18 N -0.365 5.365 19 C 0.384 3.616 20 O -0.475 6.475 21 C -0.332 4.332 22 C -0.104 4.104 23 N -0.147 5.147 24 N -0.141 5.141 25 C -0.053 4.053 26 C -0.020 4.020 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.015 0.985 32 H 0.055 0.945 33 H 0.034 0.966 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.246 0.754 38 H 0.226 0.774 39 H 0.111 0.889 40 H 0.138 0.862 41 H 0.116 0.884 42 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -0.178 2.070 25.491 25.575 hybrid contribution 0.338 -0.381 -1.842 1.911 sum 0.160 1.689 23.649 23.710 Atomic orbital electron populations 1.21638 0.92991 1.01650 1.02194 1.22312 0.96973 0.98562 0.94241 0.90773 1.20991 0.88248 0.91933 0.92286 1.44805 1.32555 1.51480 1.06685 1.19461 1.04705 1.18484 0.94376 0.89973 1.25649 0.99831 1.02096 0.98351 1.70199 1.31821 1.44194 1.13664 0.85095 0.78278 0.78811 0.77380 1.21306 1.22396 1.19255 1.21764 0.95125 0.97546 0.84354 1.22468 0.96984 0.98373 0.93141 0.89203 1.21132 0.99733 0.93175 0.83603 1.45712 1.67693 1.13599 1.09449 1.17466 0.75998 0.85920 0.82224 1.90734 1.55081 1.16826 1.84908 1.20255 1.22107 0.95119 0.95737 1.24438 0.95336 0.94409 0.96180 1.77155 1.25514 1.08761 1.03287 1.48811 1.48567 1.05094 1.11632 1.22397 1.03217 1.06421 0.73267 1.23344 0.93017 0.95182 0.90415 0.90507 0.92799 0.93319 0.96389 0.98526 0.94477 0.96594 0.93169 0.92441 0.90631 0.75366 0.77447 0.88930 0.86192 0.88381 0.77316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 9.17 71.98 0.66 -3.11 16 2 C -0.10 -3.60 3.01 -9.60 -0.03 -3.63 16 3 H 0.07 2.56 8.04 -2.39 -0.02 2.54 16 4 C 0.19 9.41 4.98 86.73 0.43 9.84 16 5 N -0.63 -32.23 3.39 -691.99 -2.35 -34.58 16 6 C -0.24 -13.56 10.27 84.03 0.86 -12.69 16 7 H 0.08 4.40 7.84 -2.91 -0.02 4.38 16 8 C -0.07 -3.80 5.48 84.86 0.46 -3.34 16 9 N -0.95 -57.72 10.36 21.65 0.22 -57.49 16 10 Si 0.98 46.01 29.56 68.60 2.03 48.04 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 13 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 14 C 0.14 5.37 6.56 86.86 0.57 5.94 16 15 C -0.09 -2.83 2.51 -9.40 -0.02 -2.86 16 16 H 0.09 2.72 8.05 -2.39 -0.02 2.70 16 17 C 0.15 4.02 5.13 86.38 0.44 4.46 16 18 N -0.71 -17.41 5.44 -466.38 -2.54 -19.95 16 19 C 0.59 15.93 7.81 86.66 0.68 16.61 16 20 O -0.59 -19.79 16.90 -4.07 -0.07 -19.86 16 21 C -0.32 -6.98 6.13 -20.15 -0.12 -7.10 16 22 C 0.08 1.67 11.50 85.65 0.99 2.65 16 23 N -0.33 -6.91 12.50 -56.27 -0.70 -7.61 16 24 N -0.36 -5.80 3.98 -367.77 -1.46 -7.27 16 25 C 0.09 0.51 11.44 127.77 1.46 1.97 16 26 C 0.13 2.33 11.30 84.28 0.95 3.28 16 27 H 0.08 1.83 8.13 -2.39 -0.02 1.81 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 29 H 0.05 1.50 8.07 -2.39 -0.02 1.48 16 30 H 0.02 0.99 6.93 -2.39 -0.02 0.97 16 31 H 0.00 -0.20 7.61 -2.39 -0.02 -0.22 16 32 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 33 H 0.02 0.65 7.96 -2.39 -0.02 0.63 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.06 1.72 8.04 -2.39 -0.02 1.70 16 36 H 0.08 1.97 8.13 -2.39 -0.02 1.95 16 37 H 0.41 8.34 7.39 -92.71 -0.68 7.65 16 38 H 0.21 3.03 7.50 -2.91 -0.02 3.01 16 39 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.21 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -77.54 349.50 2.79 -74.75 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.33 Total: 11.93 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 7.33 Total: 12.04 kcal Atomic # 7 Polarization: -120.06 SS G_CDS: -6.83 Total: -126.89 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.07 Total: -19.86 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -77.54 2.79 -74.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092453685.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.442 kcal (2) G-P(sol) polarization free energy of solvation -77.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds