Wall clock time and date at job start Tue Mar 31 2020 02:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31792 * 119.08362 * 2 1 4 4 C 1.32553 * 121.01138 * 179.97438 * 3 2 1 5 5 C 1.38115 * 119.19872 * 359.74806 * 4 3 2 6 6 C 1.39627 * 118.33184 * 0.51307 * 5 4 3 7 7 N 1.38542 * 120.53031 * 179.75517 * 6 5 4 8 8 C 1.46964 * 111.00007 * 179.71881 * 7 6 5 9 9 C 1.53048 * 109.38161 * 183.18205 * 8 7 6 10 10 N 1.46963 * 109.36396 * 301.63360 * 9 8 7 11 11 C 1.46904 * 110.99830 * 183.16880 * 10 9 8 12 12 C 1.52995 * 109.47018 * 170.25310 * 11 10 9 13 13 H 1.09003 * 109.47215 * 59.55541 * 12 11 10 14 14 O 1.42895 * 109.47306 * 299.55588 * 12 11 10 15 15 C 1.50706 * 109.47004 * 179.55254 * 12 11 10 16 16 H 1.08002 * 119.99889 * 0.02562 * 15 12 11 17 17 C 1.37878 * 119.99755 * 180.02562 * 15 12 11 18 18 N 1.31513 * 120.00175 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99891 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.46971 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47639 * 119.99576 * 19 17 15 22 22 H 1.48501 * 109.47139 * 239.99918 * 19 17 15 23 23 C 1.46953 * 110.89760 * 59.28966 * 10 9 8 24 24 C 1.46951 * 111.00766 * 303.52553 * 7 6 5 25 25 N 1.31747 * 119.08639 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.47770 * 269.97866 * 1 2 3 27 27 H 1.08998 * 109.47234 * 29.98214 * 1 2 3 28 28 H 1.09004 * 109.47076 * 149.97835 * 1 2 3 29 29 H 1.08004 * 120.39988 * 180.02562 * 4 3 2 30 30 H 1.08003 * 120.83651 * 180.24690 * 5 4 3 31 31 H 1.08995 * 109.49026 * 303.16443 * 8 7 6 32 32 H 1.09000 * 109.48428 * 63.20469 * 8 7 6 33 33 H 1.09001 * 109.49101 * 61.57995 * 9 8 7 34 34 H 1.09002 * 109.48607 * 181.64648 * 9 8 7 35 35 H 1.08998 * 109.46990 * 290.25499 * 11 10 9 36 36 H 1.08998 * 109.46927 * 50.25350 * 11 10 9 37 37 H 0.96705 * 113.99871 * 300.00043 * 14 12 11 38 38 H 0.97000 * 120.00202 * 180.02562 * 18 17 15 39 39 H 1.09005 * 109.49186 * 180.72354 * 23 10 9 40 40 H 1.09007 * 109.49340 * 60.65688 * 23 10 9 41 41 H 1.09006 * 109.48380 * 296.77707 * 24 7 6 42 42 H 1.09003 * 109.49182 * 56.81595 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1475 1.1517 0.0000 4 6 3.4723 1.1963 0.0005 5 6 4.1863 0.0140 0.0063 6 6 3.4768 -1.1885 0.0005 7 7 4.1470 -2.4011 0.0009 8 6 3.2009 -3.5257 0.0009 9 6 3.9771 -4.8423 0.0814 10 7 4.9006 -4.9340 -1.0581 11 6 5.6112 -6.2198 -1.0576 12 6 6.3733 -6.3817 -2.3743 13 1 7.0867 -5.5649 -2.4841 14 8 5.4503 -6.3578 -3.4649 15 6 7.1111 -7.6958 -2.3693 16 1 7.0429 -8.3502 -1.5127 17 6 7.8733 -8.0626 -3.4581 18 7 7.9559 -7.2661 -4.5013 19 14 8.7872 -9.6917 -3.4522 20 1 8.5318 -10.3979 -2.1711 21 1 8.3131 -10.5296 -4.5828 22 1 10.2440 -9.4426 -3.5977 23 6 5.8466 -3.8095 -1.0580 24 6 5.0701 -2.4931 -1.1388 25 7 2.1474 -1.1513 -0.0005 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 3.9872 2.1457 0.0009 30 1 5.2663 0.0195 0.0109 31 1 2.5365 -3.4420 0.8608 32 1 2.6126 -3.5059 -0.9165 33 1 4.5439 -4.8740 1.0119 34 1 3.2785 -5.6786 0.0521 35 1 6.3143 -6.2459 -0.2252 36 1 4.8923 -7.0322 -0.9516 37 1 4.7848 -7.0586 -3.4324 38 1 8.4918 -7.5243 -5.2675 39 1 6.5111 -3.8931 -1.9180 40 1 6.4347 -3.8290 -0.1404 41 1 4.5032 -2.4618 -2.0693 42 1 5.7681 -1.6564 -1.1099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119815615.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:15 Heat of formation + Delta-G solvation = 20.866302 kcal Electronic energy + Delta-G solvation = -23432.100033 eV Core-core repulsion = 20026.715743 eV Total energy + Delta-G solvation = -3405.384290 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.36304 -39.15856 -36.57349 -34.72863 -33.60402 -32.18185 -32.04542 -30.98105 -28.93042 -28.49642 -26.48537 -24.35405 -23.83868 -23.06092 -22.02677 -20.47465 -19.68064 -17.80053 -17.51794 -16.92429 -15.64467 -15.54639 -15.04469 -14.89078 -14.68884 -14.62323 -14.48400 -14.26599 -13.94066 -13.52188 -13.43364 -13.12585 -12.71483 -12.60141 -12.51940 -11.94987 -11.34593 -11.25760 -11.16011 -11.10023 -10.97296 -10.94781 -10.73205 -10.64020 -10.45815 -10.04525 -9.88013 -9.37239 -9.01408 -8.59179 -8.54776 -8.13298 -7.72744 -6.02945 -4.21223 0.82419 0.99971 3.23417 3.24920 3.33446 3.36406 3.66091 3.87821 4.07526 4.24416 4.43288 4.64647 4.92394 4.96353 5.14555 5.18135 5.22058 5.24929 5.32241 5.34398 5.41034 5.49736 5.51575 5.59434 5.72330 5.89483 5.98581 6.03018 6.09149 6.13042 6.24674 6.27875 6.49059 6.51146 6.76961 6.91395 7.06039 7.43797 7.52684 7.74336 7.84091 8.04626 8.17549 8.82795 9.44073 9.60114 11.01155 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.038216 B = 0.003002 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.507052 B = 9323.932800 C = 9529.359750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.340 3.660 3 N -0.548 5.548 4 C 0.164 3.836 5 C -0.253 4.253 6 C 0.367 3.633 7 N -0.475 5.475 8 C 0.072 3.928 9 C 0.051 3.949 10 N -0.529 5.529 11 C 0.031 3.969 12 C 0.237 3.763 13 H 0.054 0.946 14 O -0.555 6.555 15 C -0.574 4.574 16 H 0.055 0.945 17 C 0.080 3.920 18 N -0.858 5.858 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.057 3.943 24 C 0.066 3.934 25 N -0.556 5.556 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.167 0.833 30 H 0.147 0.853 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.034 0.966 34 H 0.082 0.918 35 H 0.028 0.972 36 H 0.065 0.935 37 H 0.343 0.657 38 H 0.260 0.740 39 H 0.098 0.902 40 H 0.038 0.962 41 H 0.060 0.940 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.087 13.866 9.599 19.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.071 3.929 3 N -0.265 5.265 4 C 0.001 3.999 5 C -0.278 4.278 6 C 0.126 3.874 7 N -0.192 5.192 8 C -0.055 4.055 9 C -0.078 4.078 10 N -0.253 5.253 11 C -0.096 4.096 12 C 0.179 3.821 13 H 0.072 0.928 14 O -0.356 6.356 15 C -0.613 4.613 16 H 0.073 0.927 17 C -0.127 4.127 18 N -0.494 5.494 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.209 1.209 23 C -0.071 4.071 24 C -0.059 4.059 25 N -0.277 5.277 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.184 0.816 30 H 0.165 0.835 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.100 0.900 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.186 0.814 38 H 0.070 0.930 39 H 0.117 0.883 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.556 14.338 9.229 20.054 hybrid contribution 1.468 -1.466 0.503 2.135 sum -9.087 12.872 9.732 18.520 Atomic orbital electron populations 1.20554 0.85895 1.04100 1.03722 1.23060 0.97882 0.82992 0.88931 1.68264 1.10130 1.30081 1.18050 1.22987 0.89502 0.98186 0.89273 1.22356 1.02773 0.92862 1.09810 1.20197 0.88261 0.91103 0.87853 1.59081 1.18605 1.00472 1.41072 1.22109 0.92904 0.87591 1.02874 1.22245 0.96219 0.96497 0.92805 1.62209 1.19325 1.03136 1.40662 1.23092 0.96645 0.88448 1.01394 1.19324 0.86305 0.96293 0.80216 0.92837 1.86554 1.45079 1.54287 1.49704 1.21686 1.31341 1.05290 1.02935 0.92683 1.25022 0.95526 0.96751 0.95352 1.70086 1.38030 1.35953 1.05323 0.86624 0.79622 0.84071 0.78090 1.19754 1.20850 1.20917 1.22185 0.94188 0.88705 1.02047 1.22416 0.94421 0.99418 0.89655 1.68255 1.08674 1.31105 1.19658 0.89744 0.89682 0.89665 0.81563 0.83549 0.89712 0.91937 0.94734 0.90008 0.95351 0.91661 0.81387 0.93043 0.88342 0.94405 0.92163 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.32 36.00 0.37 -0.35 16 2 C 0.34 4.16 7.64 -157.24 -1.20 2.96 16 3 N -0.55 -6.61 10.33 -10.81 -0.11 -6.73 16 4 C 0.16 1.68 11.29 -17.29 -0.20 1.48 16 5 C -0.25 -2.80 9.30 -39.11 -0.36 -3.16 16 6 C 0.37 4.91 6.40 -154.77 -0.99 3.92 16 7 N -0.48 -6.55 4.73 -172.86 -0.82 -7.37 16 8 C 0.07 1.00 4.80 -3.76 -0.02 0.98 16 9 C 0.05 0.75 5.61 -3.77 -0.02 0.73 16 10 N -0.53 -9.28 4.59 -234.46 -1.08 -10.35 16 11 C 0.03 0.63 4.56 -3.82 -0.02 0.61 16 12 C 0.24 5.81 2.71 -27.88 -0.08 5.73 16 13 H 0.05 1.43 6.46 -51.93 -0.34 1.10 16 14 O -0.55 -14.15 12.60 -35.23 -0.44 -14.59 16 15 C -0.57 -15.43 8.76 -34.44 -0.30 -15.73 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 18 N -0.86 -25.01 12.84 55.43 0.71 -24.30 16 19 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.06 0.93 5.41 -3.77 -0.02 0.91 16 24 C 0.07 0.92 5.38 -3.77 -0.02 0.90 16 25 N -0.56 -7.57 8.77 -9.97 -0.09 -7.66 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.17 1.11 8.06 -52.48 -0.42 0.68 16 30 H 0.15 1.32 7.27 -52.48 -0.38 0.94 16 31 H 0.08 1.13 7.84 -51.93 -0.41 0.72 16 32 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 35 H 0.03 0.57 8.12 -51.93 -0.42 0.14 16 36 H 0.06 1.27 8.03 -51.93 -0.42 0.85 16 37 H 0.34 7.91 9.04 45.56 0.41 8.32 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.10 1.79 6.32 -51.93 -0.33 1.46 16 40 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 0.99 6.88 -51.93 -0.36 0.63 16 LS Contribution 341.37 15.07 5.14 5.14 Total: -1.00 -31.59 341.37 -10.23 -41.82 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -5.58 Total: 7.09 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -2.95 Total: 1.09 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -1.38 Total: -56.41 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.44 Total: -14.59 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.59 -10.23 -41.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119815615.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.684 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds