Wall clock time and date at job start Tue Mar 31 2020 02:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31792 * 119.08362 * 2 1 4 4 C 1.32553 * 121.01138 * 179.97438 * 3 2 1 5 5 C 1.38115 * 119.19872 * 359.74806 * 4 3 2 6 6 C 1.39627 * 118.33184 * 0.51307 * 5 4 3 7 7 N 1.38542 * 120.53031 * 179.75517 * 6 5 4 8 8 C 1.46964 * 111.00007 * 179.71881 * 7 6 5 9 9 C 1.53048 * 109.38161 * 183.18205 * 8 7 6 10 10 N 1.46963 * 109.36396 * 301.63360 * 9 8 7 11 11 C 1.46904 * 110.99830 * 183.16880 * 10 9 8 12 12 C 1.52995 * 109.47018 * 170.25310 * 11 10 9 13 13 H 1.09003 * 109.47215 * 59.55541 * 12 11 10 14 14 O 1.42895 * 109.47306 * 299.55588 * 12 11 10 15 15 C 1.50706 * 109.47004 * 179.55254 * 12 11 10 16 16 H 1.08002 * 119.99889 * 0.02562 * 15 12 11 17 17 C 1.37878 * 119.99755 * 180.02562 * 15 12 11 18 18 N 1.31513 * 120.00175 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99891 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.46971 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47639 * 119.99576 * 19 17 15 22 22 H 1.48501 * 109.47139 * 239.99918 * 19 17 15 23 23 C 1.46953 * 110.89760 * 59.28966 * 10 9 8 24 24 C 1.46951 * 111.00766 * 303.52553 * 7 6 5 25 25 N 1.31747 * 119.08639 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.47770 * 269.97866 * 1 2 3 27 27 H 1.08998 * 109.47234 * 29.98214 * 1 2 3 28 28 H 1.09004 * 109.47076 * 149.97835 * 1 2 3 29 29 H 1.08004 * 120.39988 * 180.02562 * 4 3 2 30 30 H 1.08003 * 120.83651 * 180.24690 * 5 4 3 31 31 H 1.08995 * 109.49026 * 303.16443 * 8 7 6 32 32 H 1.09000 * 109.48428 * 63.20469 * 8 7 6 33 33 H 1.09001 * 109.49101 * 61.57995 * 9 8 7 34 34 H 1.09002 * 109.48607 * 181.64648 * 9 8 7 35 35 H 1.08998 * 109.46990 * 290.25499 * 11 10 9 36 36 H 1.08998 * 109.46927 * 50.25350 * 11 10 9 37 37 H 0.96705 * 113.99871 * 300.00043 * 14 12 11 38 38 H 0.97000 * 120.00202 * 180.02562 * 18 17 15 39 39 H 1.09005 * 109.49186 * 180.72354 * 23 10 9 40 40 H 1.09007 * 109.49340 * 60.65688 * 23 10 9 41 41 H 1.09006 * 109.48380 * 296.77707 * 24 7 6 42 42 H 1.09003 * 109.49182 * 56.81595 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1475 1.1517 0.0000 4 6 3.4723 1.1963 0.0005 5 6 4.1863 0.0140 0.0063 6 6 3.4768 -1.1885 0.0005 7 7 4.1470 -2.4011 0.0009 8 6 3.2009 -3.5257 0.0009 9 6 3.9771 -4.8423 0.0814 10 7 4.9006 -4.9340 -1.0581 11 6 5.6112 -6.2198 -1.0576 12 6 6.3733 -6.3817 -2.3743 13 1 7.0867 -5.5649 -2.4841 14 8 5.4503 -6.3578 -3.4649 15 6 7.1111 -7.6958 -2.3693 16 1 7.0429 -8.3502 -1.5127 17 6 7.8733 -8.0626 -3.4581 18 7 7.9559 -7.2661 -4.5013 19 14 8.7872 -9.6917 -3.4522 20 1 8.5318 -10.3979 -2.1711 21 1 8.3131 -10.5296 -4.5828 22 1 10.2440 -9.4426 -3.5977 23 6 5.8466 -3.8095 -1.0580 24 6 5.0701 -2.4931 -1.1388 25 7 2.1474 -1.1513 -0.0005 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 3.9872 2.1457 0.0009 30 1 5.2663 0.0195 0.0109 31 1 2.5365 -3.4420 0.8608 32 1 2.6126 -3.5059 -0.9165 33 1 4.5439 -4.8740 1.0119 34 1 3.2785 -5.6786 0.0521 35 1 6.3143 -6.2459 -0.2252 36 1 4.8923 -7.0322 -0.9516 37 1 4.7848 -7.0586 -3.4324 38 1 8.4918 -7.5243 -5.2675 39 1 6.5111 -3.8931 -1.9180 40 1 6.4347 -3.8290 -0.1404 41 1 4.5032 -2.4618 -2.0693 42 1 5.7681 -1.6564 -1.1099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119815615.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:15 Heat of formation + Delta-G solvation = -2.913299 kcal Electronic energy + Delta-G solvation = -23433.131193 eV Core-core repulsion = 20026.715743 eV Total energy + Delta-G solvation = -3406.415451 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.29027 -40.34279 -38.12718 -36.30151 -34.46260 -34.20487 -33.18299 -32.16326 -30.49904 -29.37399 -28.04773 -25.78303 -25.09714 -24.22053 -22.99005 -22.16180 -20.97050 -19.17581 -18.62451 -18.38317 -16.71028 -16.66657 -16.46698 -16.42009 -16.29473 -15.85980 -15.73819 -15.48931 -15.36555 -14.95379 -14.63204 -14.32422 -14.14173 -13.47747 -13.23564 -13.22524 -13.11346 -12.89826 -12.80293 -12.62830 -12.38652 -12.23637 -12.11471 -11.88830 -11.86061 -11.65719 -10.96841 -10.78603 -10.68155 -10.28907 -10.08584 -9.55486 -9.17521 -8.12529 -6.37897 -0.05753 0.11186 1.40035 1.41925 1.53407 2.24288 2.38802 2.77350 2.95688 3.06522 3.14158 3.25334 3.68092 3.84044 3.93108 4.09914 4.17374 4.21060 4.27230 4.36188 4.41563 4.46547 4.50905 4.54732 4.63261 4.71556 4.73055 4.80250 4.82403 4.84538 5.01306 5.04096 5.05876 5.31713 5.44517 5.61604 5.76137 5.87038 6.00775 6.13576 6.18734 6.21859 6.75489 7.15654 7.36312 7.63457 8.91906 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.038216 B = 0.003002 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.507052 B = 9323.932800 C = 9529.359750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.324 3.676 3 N -0.559 5.559 4 C 0.165 3.835 5 C -0.252 4.252 6 C 0.343 3.657 7 N -0.476 5.476 8 C 0.083 3.917 9 C 0.056 3.944 10 N -0.541 5.541 11 C 0.050 3.950 12 C 0.237 3.763 13 H 0.024 0.976 14 O -0.571 6.571 15 C -0.586 4.586 16 H 0.058 0.942 17 C 0.026 3.974 18 N -0.898 5.898 19 Si 0.959 3.041 20 H -0.264 1.264 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.060 3.940 24 C 0.077 3.923 25 N -0.575 5.575 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.204 0.796 30 H 0.167 0.833 31 H 0.093 0.907 32 H 0.046 0.954 33 H 0.039 0.961 34 H 0.092 0.908 35 H 0.028 0.972 36 H 0.072 0.928 37 H 0.352 0.648 38 H 0.261 0.739 39 H 0.072 0.928 40 H 0.043 0.957 41 H 0.042 0.958 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.376 14.444 10.857 20.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.056 3.944 3 N -0.277 5.277 4 C 0.002 3.998 5 C -0.277 4.277 6 C 0.103 3.897 7 N -0.194 5.194 8 C -0.044 4.044 9 C -0.072 4.072 10 N -0.266 5.266 11 C -0.078 4.078 12 C 0.179 3.821 13 H 0.042 0.958 14 O -0.374 6.374 15 C -0.625 4.625 16 H 0.077 0.923 17 C -0.176 4.176 18 N -0.535 5.535 19 Si 0.784 3.216 20 H -0.188 1.188 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.068 4.068 24 C -0.048 4.048 25 N -0.297 5.297 26 H 0.116 0.884 27 H 0.114 0.886 28 H 0.105 0.895 29 H 0.221 0.779 30 H 0.185 0.815 31 H 0.111 0.889 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.110 0.890 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.196 0.804 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.866 14.923 10.509 21.242 hybrid contribution 1.512 -1.541 0.117 2.162 sum -9.353 13.383 10.626 19.480 Atomic orbital electron populations 1.20645 0.83876 1.04702 1.04740 1.23682 0.99292 0.82764 0.88645 1.68357 1.11120 1.29965 1.18222 1.23637 0.89060 0.99470 0.87605 1.22622 1.03851 0.92217 1.08985 1.20407 0.88689 0.91475 0.89115 1.59125 1.18634 1.00769 1.40849 1.21956 0.92728 0.87389 1.02359 1.22269 0.95747 0.97505 0.91711 1.62122 1.19604 1.02363 1.42489 1.22683 0.96434 0.90143 0.98525 1.19190 0.86311 0.94453 0.82103 0.95792 1.86503 1.45477 1.54798 1.50595 1.22078 1.31337 1.06131 1.02932 0.92342 1.25870 0.96440 1.00303 0.95001 1.70220 1.39219 1.38005 1.06099 0.85527 0.78166 0.79641 0.78314 1.18780 1.20586 1.20563 1.22104 0.94135 0.89562 1.01037 1.22279 0.94529 0.98853 0.89160 1.68246 1.09039 1.32021 1.20352 0.88408 0.88567 0.89520 0.77887 0.81508 0.88877 0.93571 0.94309 0.89006 0.95427 0.90996 0.80372 0.93047 0.90942 0.93903 0.94000 0.87021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.32 71.23 0.73 -0.55 16 2 C 0.32 7.53 7.64 138.76 1.06 8.59 16 3 N -0.56 -12.43 10.33 -188.11 -1.94 -14.38 16 4 C 0.17 2.97 11.29 84.55 0.95 3.92 16 5 C -0.25 -5.03 9.30 22.58 0.21 -4.82 16 6 C 0.34 8.76 6.40 133.16 0.85 9.61 16 7 N -0.48 -12.67 4.73 -700.82 -3.32 -15.99 16 8 C 0.08 2.25 4.80 86.31 0.41 2.66 16 9 C 0.06 1.60 5.61 86.31 0.48 2.08 16 10 N -0.54 -18.98 4.59 -895.71 -4.11 -23.08 16 11 C 0.05 1.99 4.56 86.30 0.39 2.39 16 12 C 0.24 11.89 2.71 29.85 0.08 11.97 16 13 H 0.02 1.35 6.46 -2.39 -0.02 1.33 16 14 O -0.57 -29.76 12.60 -148.98 -1.88 -31.63 16 15 C -0.59 -31.69 8.76 25.60 0.22 -31.47 16 16 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 17 C 0.03 1.45 5.40 84.66 0.46 1.91 16 18 N -0.90 -53.25 12.84 21.45 0.28 -52.97 16 19 Si 0.96 42.91 29.54 68.60 2.03 44.93 16 20 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 23 C 0.06 1.97 5.41 86.31 0.47 2.44 16 24 C 0.08 2.11 5.38 86.31 0.46 2.58 16 25 N -0.57 -15.15 8.77 -185.45 -1.63 -16.78 16 26 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.20 1.95 8.06 -2.91 -0.02 1.93 16 30 H 0.17 2.54 7.27 -2.91 -0.02 2.51 16 31 H 0.09 2.38 7.84 -2.39 -0.02 2.36 16 32 H 0.05 1.40 8.06 -2.39 -0.02 1.38 16 33 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.09 2.43 8.07 -2.39 -0.02 2.41 16 35 H 0.03 1.10 8.12 -2.39 -0.02 1.08 16 36 H 0.07 2.75 8.03 -2.39 -0.02 2.73 16 37 H 0.35 16.48 9.04 -74.05 -0.67 15.81 16 38 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 39 H 0.07 2.75 6.32 -2.38 -0.02 2.74 16 40 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.11 2.42 6.88 -2.39 -0.02 2.40 16 Total: -1.00 -67.93 341.37 -3.42 -71.35 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.35 Total: 27.22 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 6.80 Total: 11.32 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -10.72 Total: -123.19 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -1.88 Total: -31.63 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -67.93 -3.42 -71.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119815615.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.441 kcal (2) G-P(sol) polarization free energy of solvation -67.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds