Wall clock time and date at job start Tue Mar 31 2020 03:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28441 * 125.19186 * 2 1 4 4 C 1.30862 * 110.92834 * 179.74182 * 3 2 1 5 5 C 1.39671 * 107.86369 * 0.45137 * 4 3 2 6 6 C 1.50699 * 127.32543 * 179.82842 * 5 4 3 7 7 C 1.53776 * 113.61572 * 59.67903 * 6 5 4 8 8 C 1.53775 * 87.08473 * 220.02081 * 7 6 5 9 9 C 1.53784 * 87.17191 * 25.39307 * 8 7 6 10 10 C 1.36596 * 125.18978 * 180.02562 * 2 1 3 11 11 C 1.47163 * 126.88671 * 359.93481 * 10 2 1 12 12 O 1.21629 * 120.00181 * 92.96774 * 11 10 2 13 13 N 1.34779 * 120.00037 * 272.97529 * 11 10 2 14 14 C 1.46500 * 119.99887 * 185.28894 * 13 11 10 15 15 C 1.53005 * 109.46676 * 179.97438 * 14 13 11 16 16 N 1.46500 * 109.46676 * 180.02562 * 15 14 13 17 17 C 1.36939 * 120.00103 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99371 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00429 * 179.97438 * 17 16 15 20 20 N 1.31625 * 119.99802 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00295 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46858 * 60.00344 * 21 19 17 23 23 H 1.48498 * 109.47397 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47222 * 300.00585 * 21 19 17 25 25 H 1.09000 * 109.47673 * 274.71463 * 1 2 3 26 26 H 1.09003 * 109.46918 * 34.71389 * 1 2 3 27 27 H 1.08999 * 109.46971 * 154.70867 * 1 2 3 28 28 H 1.08002 * 126.07006 * 180.30146 * 4 3 2 29 29 H 1.08997 * 112.84858 * 190.88460 * 6 5 4 30 30 H 1.09003 * 113.61223 * 105.47337 * 7 6 5 31 31 H 1.09001 * 113.61520 * 334.57570 * 7 6 5 32 32 H 1.09004 * 113.61260 * 139.97699 * 8 7 6 33 33 H 1.08998 * 113.61525 * 270.80419 * 8 7 6 34 34 H 1.09005 * 113.61672 * 89.15726 * 9 8 7 35 35 H 1.09005 * 113.61233 * 220.05924 * 9 8 7 36 36 H 0.97002 * 119.99694 * 5.28423 * 13 11 10 37 37 H 1.08996 * 109.47119 * 299.99777 * 14 13 11 38 38 H 1.08999 * 109.47109 * 60.00201 * 14 13 11 39 39 H 1.08996 * 109.47321 * 299.99845 * 15 14 13 40 40 H 1.08999 * 109.47030 * 60.00344 * 15 14 13 41 41 H 0.97002 * 120.00419 * 359.97438 * 16 15 14 42 42 H 0.96997 * 119.99946 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7272 0.0055 5 6 3.5612 -0.6667 -0.0010 6 6 4.8146 -1.5034 -0.0018 7 6 5.7187 -1.2597 1.2180 8 6 6.9126 -1.3547 0.2536 9 6 5.9488 -0.9165 -0.8618 10 6 2.2522 -1.1163 -0.0005 11 6 1.7993 -2.5165 0.0002 12 8 1.6630 -3.1122 -1.0514 13 7 1.5353 -3.1388 1.1662 14 6 1.1969 -4.5642 1.1756 15 6 0.9459 -5.0193 2.6147 16 7 0.6081 -6.4448 2.6241 17 6 0.3400 -7.0771 3.8088 18 1 0.3781 -6.5250 4.7361 19 6 0.0194 -8.4276 3.8177 20 7 -0.0264 -9.1006 2.6874 21 14 -0.3456 -9.2904 5.4338 22 1 -1.5090 -8.6411 6.0897 23 1 -0.6583 -10.7184 5.1730 24 1 0.8398 -9.1971 6.3234 25 1 -0.3634 0.0845 1.0241 26 1 -0.3633 0.8448 -0.5853 27 1 -0.3633 -0.9292 -0.4390 28 1 4.3048 1.4166 0.0114 29 1 4.6195 -2.5578 -0.1971 30 1 5.6862 -2.0638 1.9532 31 1 5.5945 -0.2725 1.6633 32 1 7.6997 -0.6295 0.4603 33 1 7.2932 -2.3684 0.1284 34 1 5.8877 0.1647 -0.9862 35 1 6.1019 -1.4440 -1.8033 36 1 1.5695 -2.6429 1.9992 37 1 0.2987 -4.7283 0.5803 38 1 2.0226 -5.1364 0.7527 39 1 1.8444 -4.8552 3.2095 40 1 0.1204 -4.4470 3.0379 41 1 0.5736 -6.9406 1.7910 42 1 -0.2501 -10.0444 2.6937 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127730996.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:22 Heat of formation + Delta-G solvation = 71.757938 kcal Electronic energy + Delta-G solvation = -22933.581212 eV Core-core repulsion = 19530.403749 eV Total energy + Delta-G solvation = -3403.177463 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.72210 -39.38767 -38.73378 -35.79116 -33.94261 -33.52230 -31.67457 -30.91275 -28.09867 -27.41482 -25.73975 -25.48302 -24.02750 -22.52662 -21.58570 -21.50091 -19.93977 -19.22016 -18.11280 -17.28690 -16.54701 -15.96940 -15.81139 -15.57563 -15.28056 -14.69793 -14.60607 -14.38428 -13.82111 -13.36660 -13.29874 -13.21886 -13.06862 -12.91445 -12.70144 -12.58503 -12.38413 -11.54838 -11.17734 -11.07521 -10.91123 -10.83144 -10.75589 -10.63084 -10.46250 -10.27641 -10.13451 -9.79445 -9.32106 -9.11825 -8.92931 -8.79909 -7.04572 -5.83507 -3.14761 1.51045 1.97921 2.47146 2.62167 3.15401 3.40227 3.44766 3.46014 4.20394 4.43404 4.50244 4.57026 4.59629 4.64566 4.81683 4.84762 4.95455 5.10389 5.13147 5.30140 5.40709 5.43991 5.45635 5.58080 5.60701 5.68070 5.72896 5.77893 5.85233 5.86801 6.03442 6.12257 6.32326 6.32621 6.36402 6.54706 6.61468 6.62650 7.38058 7.61594 7.88511 8.03425 8.33856 9.45239 9.98887 10.33639 11.38887 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018299 B = 0.003169 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.761862 B = 8834.351146 C = 9680.919538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.274 5.274 3 N -0.285 5.285 4 C 0.008 3.992 5 C -0.140 4.140 6 C -0.040 4.040 7 C -0.130 4.130 8 C -0.143 4.143 9 C -0.129 4.129 10 C -0.025 4.025 11 C 0.588 3.412 12 O -0.521 6.521 13 N -0.707 5.707 14 C 0.109 3.891 15 C 0.145 3.855 16 N -0.729 5.729 17 C -0.247 4.247 18 H 0.071 0.929 19 C -0.010 4.010 20 N -0.931 5.931 21 Si 0.911 3.089 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.183 0.817 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.403 0.597 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.026 0.974 40 H 0.024 0.976 41 H 0.386 0.614 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.420 21.287 -5.121 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.062 5.062 3 N -0.116 5.116 4 C -0.169 4.169 5 C -0.151 4.151 6 C -0.059 4.059 7 C -0.167 4.167 8 C -0.180 4.180 9 C -0.167 4.167 10 C -0.153 4.153 11 C 0.370 3.630 12 O -0.395 6.395 13 N -0.358 5.358 14 C -0.014 4.014 15 C 0.017 3.983 16 N -0.374 5.374 17 C -0.377 4.377 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 H 0.106 0.894 26 H 0.117 0.883 27 H 0.113 0.887 28 H 0.200 0.800 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.237 0.763 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.220 0.780 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.368 21.683 -5.720 23.605 hybrid contribution 0.191 -1.099 0.989 1.491 sum 7.559 20.584 -4.731 22.433 Atomic orbital electron populations 1.22206 0.73037 1.05531 1.04695 1.45528 1.07388 1.01823 1.51494 1.73131 1.04078 1.13542 1.20807 1.23302 0.93283 0.94121 1.06223 1.20482 0.92206 0.94041 1.08331 1.20917 0.89026 0.98305 0.97689 1.22965 0.95190 1.02379 0.96195 1.22824 0.96628 1.01831 0.96753 1.22979 0.95031 1.01072 0.97601 1.21434 0.91899 0.88912 1.13104 1.16997 0.77588 0.84068 0.84344 1.90871 1.50862 1.66507 1.31266 1.45945 1.69274 1.12013 1.08601 1.21695 1.01499 0.78485 0.99700 1.20747 0.97771 0.88057 0.91733 1.42168 1.84151 1.03477 1.07618 1.19138 1.40136 0.92206 0.86268 0.91073 1.24778 1.02203 0.96609 0.97090 1.69656 1.54761 1.08789 1.24618 0.86223 0.78153 0.78698 0.82807 1.21177 1.21577 1.21136 0.89384 0.88348 0.88743 0.80032 0.88655 0.91165 0.89870 0.91368 0.90074 0.89871 0.91306 0.76298 0.90848 0.90870 0.95642 0.95784 0.77970 0.93259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.70 11.21 59.85 0.67 1.38 16 2 N -0.27 -3.21 3.75 -63.88 -0.24 -3.45 16 3 N -0.29 -3.43 11.90 30.59 0.36 -3.07 16 4 C 0.01 0.09 11.24 -17.43 -0.20 -0.11 16 5 C -0.14 -1.65 5.49 -104.02 -0.57 -2.22 16 6 C -0.04 -0.42 4.11 -90.87 -0.37 -0.79 16 7 C -0.13 -1.14 7.62 -25.92 -0.20 -1.34 16 8 C -0.14 -1.12 8.08 -25.92 -0.21 -1.33 16 9 C -0.13 -1.12 7.60 -25.82 -0.20 -1.31 16 10 C -0.02 -0.32 6.71 -82.06 -0.55 -0.87 16 11 C 0.59 8.63 6.67 -12.64 -0.08 8.54 16 12 O -0.52 -9.59 17.12 5.25 0.09 -9.50 16 13 N -0.71 -9.48 5.55 -61.47 -0.34 -9.82 16 14 C 0.11 1.79 5.79 -4.04 -0.02 1.76 16 15 C 0.15 2.73 6.37 -4.04 -0.03 2.71 16 16 N -0.73 -18.07 5.60 -59.91 -0.34 -18.40 16 17 C -0.25 -6.77 9.99 -15.06 -0.15 -6.92 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 21 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.09 0.80 7.66 -51.93 -0.40 0.40 16 28 H 0.18 1.41 7.71 -52.49 -0.40 1.00 16 29 H 0.10 1.16 7.94 -51.93 -0.41 0.75 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.67 8.02 -51.93 -0.42 0.25 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.63 7.22 -51.93 -0.38 0.25 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.40 4.50 8.46 -40.82 -0.35 4.16 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.39 10.14 7.67 -40.82 -0.31 9.82 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 356.48 15.07 5.37 5.37 Total: -1.00 -33.42 356.48 -7.83 -41.26 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -6.44 Total: 8.65 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -2.00 Total: -0.88 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: 0.17 Total: -61.87 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.42 -7.83 -41.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127730996.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.013 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds