Wall clock time and date at job start Tue Mar 31 2020 03:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28441 * 125.19186 * 2 1 4 4 C 1.30862 * 110.92834 * 179.74182 * 3 2 1 5 5 C 1.39671 * 107.86369 * 0.45137 * 4 3 2 6 6 C 1.50699 * 127.32543 * 179.82842 * 5 4 3 7 7 C 1.53776 * 113.61572 * 59.67903 * 6 5 4 8 8 C 1.53775 * 87.08473 * 220.02081 * 7 6 5 9 9 C 1.53784 * 87.17191 * 25.39307 * 8 7 6 10 10 C 1.36596 * 125.18978 * 180.02562 * 2 1 3 11 11 C 1.47163 * 126.88671 * 359.93481 * 10 2 1 12 12 O 1.21629 * 120.00181 * 92.96774 * 11 10 2 13 13 N 1.34779 * 120.00037 * 272.97529 * 11 10 2 14 14 C 1.46500 * 119.99887 * 185.28894 * 13 11 10 15 15 C 1.53005 * 109.46676 * 179.97438 * 14 13 11 16 16 N 1.46500 * 109.46676 * 180.02562 * 15 14 13 17 17 C 1.36939 * 120.00103 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99371 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00429 * 179.97438 * 17 16 15 20 20 N 1.31625 * 119.99802 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00295 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46858 * 60.00344 * 21 19 17 23 23 H 1.48498 * 109.47397 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47222 * 300.00585 * 21 19 17 25 25 H 1.09000 * 109.47673 * 274.71463 * 1 2 3 26 26 H 1.09003 * 109.46918 * 34.71389 * 1 2 3 27 27 H 1.08999 * 109.46971 * 154.70867 * 1 2 3 28 28 H 1.08002 * 126.07006 * 180.30146 * 4 3 2 29 29 H 1.08997 * 112.84858 * 190.88460 * 6 5 4 30 30 H 1.09003 * 113.61223 * 105.47337 * 7 6 5 31 31 H 1.09001 * 113.61520 * 334.57570 * 7 6 5 32 32 H 1.09004 * 113.61260 * 139.97699 * 8 7 6 33 33 H 1.08998 * 113.61525 * 270.80419 * 8 7 6 34 34 H 1.09005 * 113.61672 * 89.15726 * 9 8 7 35 35 H 1.09005 * 113.61233 * 220.05924 * 9 8 7 36 36 H 0.97002 * 119.99694 * 5.28423 * 13 11 10 37 37 H 1.08996 * 109.47119 * 299.99777 * 14 13 11 38 38 H 1.08999 * 109.47109 * 60.00201 * 14 13 11 39 39 H 1.08996 * 109.47321 * 299.99845 * 15 14 13 40 40 H 1.08999 * 109.47030 * 60.00344 * 15 14 13 41 41 H 0.97002 * 120.00419 * 359.97438 * 16 15 14 42 42 H 0.96997 * 119.99946 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7272 0.0055 5 6 3.5612 -0.6667 -0.0010 6 6 4.8146 -1.5034 -0.0018 7 6 5.7187 -1.2597 1.2180 8 6 6.9126 -1.3547 0.2536 9 6 5.9488 -0.9165 -0.8618 10 6 2.2522 -1.1163 -0.0005 11 6 1.7993 -2.5165 0.0002 12 8 1.6630 -3.1122 -1.0514 13 7 1.5353 -3.1388 1.1662 14 6 1.1969 -4.5642 1.1756 15 6 0.9459 -5.0193 2.6147 16 7 0.6081 -6.4448 2.6241 17 6 0.3400 -7.0771 3.8088 18 1 0.3781 -6.5250 4.7361 19 6 0.0194 -8.4276 3.8177 20 7 -0.0264 -9.1006 2.6874 21 14 -0.3456 -9.2904 5.4338 22 1 -1.5090 -8.6411 6.0897 23 1 -0.6583 -10.7184 5.1730 24 1 0.8398 -9.1971 6.3234 25 1 -0.3634 0.0845 1.0241 26 1 -0.3633 0.8448 -0.5853 27 1 -0.3633 -0.9292 -0.4390 28 1 4.3048 1.4166 0.0114 29 1 4.6195 -2.5578 -0.1971 30 1 5.6862 -2.0638 1.9532 31 1 5.5945 -0.2725 1.6633 32 1 7.6997 -0.6295 0.4603 33 1 7.2932 -2.3684 0.1284 34 1 5.8877 0.1647 -0.9862 35 1 6.1019 -1.4440 -1.8033 36 1 1.5695 -2.6429 1.9992 37 1 0.2987 -4.7283 0.5803 38 1 2.0226 -5.1364 0.7527 39 1 1.8444 -4.8552 3.2095 40 1 0.1204 -4.4470 3.0379 41 1 0.5736 -6.9406 1.7910 42 1 -0.2501 -10.0444 2.6937 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127730996.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:21 Heat of formation + Delta-G solvation = 48.678297 kcal Electronic energy + Delta-G solvation = -22934.582020 eV Core-core repulsion = 19530.403749 eV Total energy + Delta-G solvation = -3404.178271 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.60591 -40.63713 -39.45561 -37.38665 -35.60214 -34.30795 -33.30435 -32.17007 -29.55616 -28.34704 -26.43849 -26.33693 -25.71192 -23.90250 -23.01224 -22.32587 -21.01948 -19.95159 -19.41319 -18.99317 -17.63874 -16.97052 -16.85760 -16.62481 -16.46454 -16.34983 -15.66432 -15.43986 -15.15238 -15.08684 -14.78760 -14.34863 -13.96961 -13.75100 -13.47046 -13.24675 -13.13611 -13.07968 -13.05645 -12.65419 -12.58992 -12.13884 -11.93093 -11.86207 -11.59697 -11.37869 -11.31970 -11.16784 -10.99103 -10.35976 -10.20584 -9.66363 -9.07631 -7.97235 -5.28817 0.56802 0.95849 1.48564 1.52096 1.56753 1.59100 1.64191 2.05616 2.57132 3.37075 3.41386 3.46296 3.73150 3.90345 3.93477 3.95205 4.11141 4.13764 4.15714 4.22043 4.24083 4.29592 4.49241 4.52622 4.53377 4.68748 4.88645 4.92073 4.94072 5.02054 5.08593 5.15792 5.16212 5.18820 5.40313 5.47802 5.48775 5.64556 5.72924 6.23118 6.23453 6.87398 7.01587 7.30000 8.00958 8.23997 9.26062 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018299 B = 0.003169 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.761862 B = 8834.351146 C = 9680.919538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.275 5.275 3 N -0.294 5.294 4 C 0.010 3.990 5 C -0.139 4.139 6 C -0.052 4.052 7 C -0.124 4.124 8 C -0.136 4.136 9 C -0.125 4.125 10 C -0.050 4.050 11 C 0.597 3.403 12 O -0.564 6.564 13 N -0.692 5.692 14 C 0.127 3.873 15 C 0.150 3.850 16 N -0.746 5.746 17 C -0.250 4.250 18 H 0.082 0.918 19 C -0.074 4.074 20 N -0.970 5.970 21 Si 0.978 3.022 22 H -0.275 1.275 23 H -0.297 1.297 24 H -0.275 1.275 25 H 0.108 0.892 26 H 0.115 0.885 27 H 0.087 0.913 28 H 0.213 0.787 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.417 0.583 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.037 0.963 40 H 0.039 0.961 41 H 0.375 0.625 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.172 23.477 -3.764 25.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.063 5.063 3 N -0.125 5.125 4 C -0.166 4.166 5 C -0.150 4.150 6 C -0.071 4.071 7 C -0.161 4.161 8 C -0.173 4.173 9 C -0.163 4.163 10 C -0.178 4.178 11 C 0.381 3.619 12 O -0.441 6.441 13 N -0.343 5.343 14 C 0.003 3.997 15 C 0.023 3.977 16 N -0.389 5.389 17 C -0.382 4.382 18 H 0.100 0.900 19 C -0.267 4.267 20 N -0.620 5.620 21 Si 0.806 3.194 22 H -0.201 1.201 23 H -0.223 1.223 24 H -0.201 1.201 25 H 0.126 0.874 26 H 0.133 0.867 27 H 0.106 0.894 28 H 0.230 0.770 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.081 0.919 36 H 0.254 0.746 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.207 0.793 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.125 23.941 -4.317 25.648 hybrid contribution -0.027 -1.681 0.542 1.766 sum 8.098 22.260 -3.775 23.986 Atomic orbital electron populations 1.22470 0.71513 1.05945 1.06293 1.45798 1.08331 1.01182 1.51038 1.73132 1.04730 1.13614 1.21029 1.23773 0.93685 0.93966 1.05220 1.20742 0.92017 0.94798 1.07465 1.20978 0.89466 0.96916 0.99789 1.22963 0.94888 1.02799 0.95484 1.22794 0.96666 1.02151 0.95737 1.23009 0.94082 1.01872 0.97296 1.21242 0.92874 0.88229 1.15459 1.17170 0.76395 0.84687 0.83651 1.90846 1.52757 1.67735 1.32768 1.45705 1.68633 1.10799 1.09190 1.21292 1.00555 0.79908 0.97959 1.20827 0.98394 0.85244 0.93249 1.42387 1.84322 1.05729 1.06507 1.19597 1.38538 0.92593 0.87442 0.89968 1.25645 1.03053 0.97598 1.00356 1.69824 1.56635 1.08683 1.26830 0.85152 0.78342 0.76945 0.78936 1.20133 1.22312 1.20131 0.87405 0.86669 0.89433 0.77046 0.91230 0.91887 0.88536 0.89522 0.90506 0.88223 0.91924 0.74640 0.91897 0.92167 0.94493 0.94347 0.79346 0.93867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 11.21 127.77 1.43 2.60 16 2 N -0.28 -6.07 3.75 -356.02 -1.33 -7.41 16 3 N -0.29 -6.49 11.90 -57.14 -0.68 -7.17 16 4 C 0.01 0.20 11.24 85.18 0.96 1.15 16 5 C -0.14 -3.11 5.49 -19.48 -0.11 -3.22 16 6 C -0.05 -1.05 4.11 -10.96 -0.05 -1.10 16 7 C -0.12 -1.96 7.62 31.12 0.24 -1.72 16 8 C -0.14 -1.86 8.08 31.12 0.25 -1.61 16 9 C -0.13 -1.95 7.60 31.18 0.24 -1.72 16 10 C -0.05 -1.26 6.71 40.79 0.27 -0.98 16 11 C 0.60 17.66 6.67 86.59 0.58 18.24 16 12 O -0.56 -21.41 17.12 -4.12 -0.07 -21.48 16 13 N -0.69 -18.28 5.55 -466.62 -2.59 -20.87 16 14 C 0.13 4.17 5.79 86.38 0.50 4.67 16 15 C 0.15 5.51 6.37 86.38 0.55 6.07 16 16 N -0.75 -37.05 5.60 -343.45 -1.92 -38.98 16 17 C -0.25 -13.61 9.99 84.03 0.84 -12.77 16 18 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 19 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 20 N -0.97 -59.02 13.06 21.65 0.28 -58.74 16 21 Si 0.98 45.09 29.55 68.60 2.03 47.12 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 25 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.09 1.44 7.66 -2.39 -0.02 1.42 16 28 H 0.21 2.52 7.71 -2.91 -0.02 2.50 16 29 H 0.07 1.76 7.94 -2.39 -0.02 1.74 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.10 1.28 8.02 -2.39 -0.02 1.26 16 32 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.10 1.22 7.22 -2.38 -0.02 1.21 16 35 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.42 8.78 8.46 -92.71 -0.78 7.99 16 37 H 0.06 2.22 8.14 -2.39 -0.02 2.21 16 38 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.37 20.11 7.67 -92.71 -0.71 19.40 16 42 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -71.77 356.48 1.43 -70.35 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: -0.46 Total: 31.29 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 6.17 Total: 5.89 kcal Atomic # 7 Polarization: -126.91 SS G_CDS: -6.25 Total: -133.16 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.07 Total: -21.48 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -71.77 1.43 -70.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127730996.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.025 kcal (2) G-P(sol) polarization free energy of solvation -71.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds