Wall clock time and date at job start Tue Mar 31 2020 03:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 N 1.28460 * 124.88570 * 269.70017 * 3 2 1 5 5 C 1.31812 * 110.07590 * 179.88416 * 4 3 2 6 6 C 1.47712 * 126.52071 * 180.13042 * 5 4 3 7 7 O 1.21570 * 119.99699 * 180.28466 * 6 5 4 8 8 N 1.34773 * 119.99887 * 0.27778 * 6 5 4 9 9 C 1.46497 * 119.99933 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47163 * 180.02562 * 9 8 6 11 11 N 1.46503 * 109.46966 * 180.02562 * 10 9 8 12 12 C 1.36936 * 119.99713 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00425 * 359.97438 * 12 11 10 14 14 C 1.38820 * 119.99804 * 180.02562 * 12 11 10 15 15 N 1.31621 * 119.99808 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99811 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47302 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47088 * 119.99868 * 16 14 12 19 19 H 1.48500 * 109.46838 * 239.99598 * 16 14 12 20 20 C 1.41505 * 106.96186 * 0.36492 * 5 4 3 21 21 C 1.35035 * 124.88388 * 89.99933 * 3 2 1 22 22 C 1.50709 * 126.38416 * 359.97438 * 21 3 2 23 23 C 1.52995 * 117.49955 * 213.62203 * 22 21 3 24 24 C 1.52999 * 60.00208 * 252.51360 * 23 22 21 25 25 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 30 30 H 0.97001 * 119.99992 * 0.02562 * 8 6 5 31 31 H 1.09003 * 109.47093 * 300.00115 * 9 8 6 32 32 H 1.08996 * 109.47156 * 60.00148 * 9 8 6 33 33 H 1.09003 * 109.46768 * 299.99773 * 10 9 8 34 34 H 1.08996 * 109.47406 * 59.99759 * 10 9 8 35 35 H 0.97000 * 119.99890 * 359.97438 * 11 10 9 36 36 H 0.97000 * 119.99380 * 180.02562 * 15 14 12 37 37 H 1.07999 * 127.24977 * 179.78390 * 20 5 4 38 38 H 1.08994 * 115.55003 * 359.33598 * 22 21 3 39 39 H 1.09008 * 117.49714 * 0.02562 * 23 22 21 40 40 H 1.08999 * 117.49859 * 145.02251 * 23 22 21 41 41 H 1.08993 * 117.50175 * 252.51289 * 24 23 22 42 42 H 1.08997 * 117.52179 * 107.47792 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2685 2.0720 -1.0537 5 6 2.6894 3.2749 -0.7168 6 6 3.0751 4.3617 -1.6398 7 8 3.4534 5.4291 -1.1975 8 7 3.0077 4.1701 -2.9721 9 6 3.3907 5.2478 -3.8875 10 6 3.2225 4.7736 -5.3324 11 7 3.6061 5.8512 -6.2478 12 6 3.5368 5.6568 -7.6015 13 1 3.1997 4.7090 -7.9944 14 6 3.9008 6.6777 -8.4689 15 7 4.3121 7.8326 -7.9900 16 14 3.8069 6.4122 -10.3155 17 1 3.3180 5.0378 -10.5938 18 1 2.8721 7.4006 -10.9108 19 1 5.1565 6.5869 -10.9099 20 6 2.7066 3.3252 0.6972 21 6 2.2759 2.1093 1.1077 22 6 2.1140 1.6532 2.5350 23 6 1.6868 2.6990 3.5667 24 6 3.1232 2.1721 3.5612 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.7055 3.3185 -3.3249 31 1 2.7543 6.1155 -3.7137 32 1 4.4317 5.5199 -3.7129 33 1 3.8587 3.9058 -5.5064 34 1 2.1814 4.5017 -5.5067 35 1 3.9086 6.7026 -5.8949 36 1 4.5662 8.5461 -8.5962 37 1 3.0014 4.1582 1.3182 38 1 1.7420 0.6369 2.6644 39 1 1.5224 3.7170 3.2131 40 1 1.0335 2.3709 4.3751 41 1 3.4149 1.4973 4.3659 42 1 3.9044 2.8430 3.2040 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129104127.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:49 Heat of formation + Delta-G solvation = 75.460480 kcal Electronic energy + Delta-G solvation = -22290.181643 eV Core-core repulsion = 18887.164734 eV Total energy + Delta-G solvation = -3403.016909 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.92538 -39.16640 -37.62223 -35.61513 -34.91946 -33.75325 -31.28927 -30.56554 -30.23914 -27.73367 -24.99489 -24.12405 -23.31578 -22.80841 -22.28443 -21.34934 -20.58794 -19.43130 -17.91556 -17.18093 -16.71511 -16.14402 -15.51405 -15.40935 -15.09970 -14.92023 -14.63456 -14.47278 -13.80341 -13.61905 -13.61616 -13.11486 -12.96169 -12.82434 -12.60197 -12.16055 -11.98966 -11.84727 -11.45914 -11.33593 -11.24386 -11.05613 -10.80340 -10.79276 -10.72854 -10.09506 -9.96896 -9.70426 -9.27755 -8.96420 -8.92339 -8.71524 -6.94404 -5.75489 -3.05745 1.48209 1.87777 2.16393 3.33636 3.45078 3.46265 3.50537 3.52916 3.57979 3.93725 4.07860 4.39829 4.42831 4.52277 4.55112 4.58206 4.64873 4.70886 5.01358 5.16970 5.19417 5.21624 5.34819 5.47622 5.53546 5.55081 5.57934 5.63593 5.69219 5.80305 5.85147 6.03642 6.20300 6.26146 6.54435 6.56780 6.78109 6.83327 7.60315 7.70805 7.88278 8.39819 8.42816 9.53577 10.08875 10.44014 11.47294 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029814 B = 0.002483 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.940574 B =11273.865072 C =12046.637919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.114 3.886 3 N -0.277 5.277 4 N -0.258 5.258 5 C -0.008 4.008 6 C 0.600 3.400 7 O -0.535 6.535 8 N -0.709 5.709 9 C 0.111 3.889 10 C 0.145 3.855 11 N -0.730 5.730 12 C -0.241 4.241 13 H 0.072 0.928 14 C -0.014 4.014 15 N -0.931 5.931 16 Si 0.910 3.090 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C -0.177 4.177 21 C 0.044 3.956 22 C -0.098 4.098 23 C -0.161 4.161 24 C -0.162 4.162 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.405 0.595 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.386 0.614 36 H 0.256 0.744 37 H 0.159 0.841 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.211 -18.848 25.435 32.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.006 4.006 3 N -0.065 5.065 4 N -0.093 5.093 5 C -0.168 4.168 6 C 0.384 3.616 7 O -0.410 6.410 8 N -0.360 5.360 9 C -0.013 4.013 10 C 0.016 3.984 11 N -0.375 5.375 12 C -0.372 4.372 13 H 0.090 0.910 14 C -0.210 4.210 15 N -0.579 5.579 16 Si 0.741 3.259 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 C -0.205 4.205 21 C -0.080 4.080 22 C -0.118 4.118 23 C -0.199 4.199 24 C -0.200 4.200 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.240 0.760 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.220 0.780 36 H 0.066 0.934 37 H 0.177 0.823 38 H 0.132 0.868 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.233 -18.936 24.599 31.874 hybrid contribution 0.050 0.153 -0.485 0.511 sum -7.184 -18.782 24.114 31.399 Atomic orbital electron populations 1.22183 0.93405 1.03558 1.03767 1.21979 0.96029 0.77302 1.05298 1.45424 1.46314 1.12392 1.02387 1.73545 1.17418 1.04825 1.13542 1.21918 1.07973 0.92865 0.94033 1.16855 0.77827 0.85397 0.81531 1.90798 1.47389 1.25650 1.77136 1.45778 1.66863 1.18093 1.05296 1.21621 1.01062 0.89494 0.89088 1.20756 0.97785 0.92781 0.87034 1.42201 1.79968 1.12987 1.02318 1.19248 1.37385 0.98427 0.82163 0.90980 1.24785 1.01967 0.96066 0.98178 1.69683 1.50656 1.03940 1.33639 0.86075 0.77206 0.77240 0.85394 1.20531 1.21803 1.21807 1.21386 1.07824 0.97759 0.93566 1.20392 1.05940 0.92549 0.89082 1.20265 1.07058 0.99282 0.85159 1.23101 0.97924 0.98928 0.99956 1.23107 0.93252 1.03569 1.00070 0.91148 0.91681 0.90023 0.88306 0.87802 0.76013 0.91065 0.91054 0.95707 0.95709 0.77986 0.93447 0.82313 0.86752 0.87872 0.88025 0.88020 0.87873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.84 10.24 37.16 0.38 -0.46 16 2 C 0.11 0.66 6.74 -4.04 -0.03 0.63 16 3 N -0.28 -2.78 3.30 -57.11 -0.19 -2.97 16 4 N -0.26 -3.36 11.67 33.42 0.39 -2.97 16 5 C -0.01 -0.11 7.13 -82.76 -0.59 -0.70 16 6 C 0.60 10.30 7.82 -12.39 -0.10 10.20 16 7 O -0.53 -10.78 16.93 5.30 0.09 -10.69 16 8 N -0.71 -11.54 5.55 -61.29 -0.34 -11.88 16 9 C 0.11 2.06 5.79 -4.04 -0.02 2.04 16 10 C 0.14 3.00 6.37 -4.04 -0.03 2.98 16 11 N -0.73 -19.15 5.60 -59.90 -0.34 -19.49 16 12 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 13 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 14 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 15 N -0.93 -28.78 13.06 55.49 0.72 -28.06 16 16 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 C -0.18 -2.22 9.86 -39.36 -0.39 -2.61 16 21 C 0.04 0.44 6.60 -82.20 -0.54 -0.11 16 22 C -0.10 -0.63 5.93 -91.77 -0.54 -1.17 16 23 C -0.16 -0.91 10.05 -26.73 -0.27 -1.18 16 24 C -0.16 -0.92 10.05 -26.73 -0.27 -1.19 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.10 0.33 7.13 -51.93 -0.37 -0.04 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.41 5.83 8.20 -40.82 -0.33 5.49 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.39 10.67 7.67 -40.82 -0.31 10.36 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 38 H 0.11 0.50 7.18 -51.93 -0.37 0.13 16 39 H 0.10 0.68 7.94 -51.92 -0.41 0.27 16 40 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.10 0.68 7.97 -51.93 -0.41 0.27 16 LS Contribution 360.76 15.07 5.44 5.44 Total: -1.00 -35.13 360.76 -8.30 -43.43 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.41 Total: 8.62 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -2.64 Total: 0.87 kcal Atomic # 7 Polarization: -65.61 SS G_CDS: 0.25 Total: -65.36 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.13 -8.30 -43.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129104127.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.892 kcal (2) G-P(sol) polarization free energy of solvation -35.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds