Wall clock time and date at job start Tue Mar 31 2020 03:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 N 1.28460 * 124.88570 * 269.70017 * 3 2 1 5 5 C 1.31812 * 110.07590 * 179.88416 * 4 3 2 6 6 C 1.47712 * 126.52071 * 180.13042 * 5 4 3 7 7 O 1.21570 * 119.99699 * 180.28466 * 6 5 4 8 8 N 1.34773 * 119.99887 * 0.27778 * 6 5 4 9 9 C 1.46497 * 119.99933 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47163 * 180.02562 * 9 8 6 11 11 N 1.46503 * 109.46966 * 180.02562 * 10 9 8 12 12 C 1.36936 * 119.99713 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00425 * 359.97438 * 12 11 10 14 14 C 1.38820 * 119.99804 * 180.02562 * 12 11 10 15 15 N 1.31621 * 119.99808 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99811 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47302 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47088 * 119.99868 * 16 14 12 19 19 H 1.48500 * 109.46838 * 239.99598 * 16 14 12 20 20 C 1.41505 * 106.96186 * 0.36492 * 5 4 3 21 21 C 1.35035 * 124.88388 * 89.99933 * 3 2 1 22 22 C 1.50709 * 126.38416 * 359.97438 * 21 3 2 23 23 C 1.52995 * 117.49955 * 213.62203 * 22 21 3 24 24 C 1.52999 * 60.00208 * 252.51360 * 23 22 21 25 25 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 30 30 H 0.97001 * 119.99992 * 0.02562 * 8 6 5 31 31 H 1.09003 * 109.47093 * 300.00115 * 9 8 6 32 32 H 1.08996 * 109.47156 * 60.00148 * 9 8 6 33 33 H 1.09003 * 109.46768 * 299.99773 * 10 9 8 34 34 H 1.08996 * 109.47406 * 59.99759 * 10 9 8 35 35 H 0.97000 * 119.99890 * 359.97438 * 11 10 9 36 36 H 0.97000 * 119.99380 * 180.02562 * 15 14 12 37 37 H 1.07999 * 127.24977 * 179.78390 * 20 5 4 38 38 H 1.08994 * 115.55003 * 359.33598 * 22 21 3 39 39 H 1.09008 * 117.49714 * 0.02562 * 23 22 21 40 40 H 1.08999 * 117.49859 * 145.02251 * 23 22 21 41 41 H 1.08993 * 117.50175 * 252.51289 * 24 23 22 42 42 H 1.08997 * 117.52179 * 107.47792 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2685 2.0720 -1.0537 5 6 2.6894 3.2749 -0.7168 6 6 3.0751 4.3617 -1.6398 7 8 3.4534 5.4291 -1.1975 8 7 3.0077 4.1701 -2.9721 9 6 3.3907 5.2478 -3.8875 10 6 3.2225 4.7736 -5.3324 11 7 3.6061 5.8512 -6.2478 12 6 3.5368 5.6568 -7.6015 13 1 3.1997 4.7090 -7.9944 14 6 3.9008 6.6777 -8.4689 15 7 4.3121 7.8326 -7.9900 16 14 3.8069 6.4122 -10.3155 17 1 3.3180 5.0378 -10.5938 18 1 2.8721 7.4006 -10.9108 19 1 5.1565 6.5869 -10.9099 20 6 2.7066 3.3252 0.6972 21 6 2.2759 2.1093 1.1077 22 6 2.1140 1.6532 2.5350 23 6 1.6868 2.6990 3.5667 24 6 3.1232 2.1721 3.5612 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.7055 3.3185 -3.3249 31 1 2.7543 6.1155 -3.7137 32 1 4.4317 5.5199 -3.7129 33 1 3.8587 3.9058 -5.5064 34 1 2.1814 4.5017 -5.5067 35 1 3.9086 6.7026 -5.8949 36 1 4.5662 8.5461 -8.5962 37 1 3.0014 4.1582 1.3182 38 1 1.7420 0.6369 2.6644 39 1 1.5224 3.7170 3.2131 40 1 1.0335 2.3709 4.3751 41 1 3.4149 1.4973 4.3659 42 1 3.9044 2.8430 3.2040 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129104127.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:48 Heat of formation + Delta-G solvation = 50.704740 kcal Electronic energy + Delta-G solvation = -22291.255132 eV Core-core repulsion = 18887.164734 eV Total energy + Delta-G solvation = -3404.090398 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.80470 -40.56315 -38.12791 -37.35944 -35.63104 -35.49913 -33.20495 -31.45204 -31.13721 -29.40459 -26.26058 -25.17911 -24.55265 -23.30021 -23.21154 -22.93179 -21.60003 -20.43142 -19.36939 -18.61810 -17.74129 -17.15567 -16.92560 -16.48673 -16.46420 -16.05148 -15.54086 -15.39245 -15.14759 -15.11100 -15.03189 -14.54612 -14.43416 -13.53340 -13.13965 -13.06788 -13.06084 -12.77508 -12.71157 -12.54227 -12.39447 -12.30245 -12.06266 -12.02446 -11.95062 -11.88105 -11.40445 -11.30857 -11.02102 -10.36554 -10.03773 -9.76074 -9.08475 -7.97715 -5.29546 0.44214 0.96660 1.43850 1.47970 1.49685 1.59884 2.02459 2.27909 2.56940 3.03900 3.20089 3.36272 3.43865 3.76093 3.94925 3.97372 4.00370 4.01137 4.10671 4.13311 4.18212 4.33156 4.33963 4.46537 4.54827 4.70782 4.78584 4.82971 4.83451 4.97218 5.03606 5.09016 5.16903 5.22089 5.25953 5.28439 5.31210 5.47708 5.81502 6.22947 6.36113 6.85429 7.07665 7.29157 7.99613 8.24169 9.26236 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029814 B = 0.002483 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.940574 B =11273.865072 C =12046.637919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.101 3.899 3 N -0.267 5.267 4 N -0.267 5.267 5 C -0.039 4.039 6 C 0.600 3.400 7 O -0.574 6.574 8 N -0.700 5.700 9 C 0.127 3.873 10 C 0.150 3.850 11 N -0.746 5.746 12 C -0.248 4.248 13 H 0.082 0.918 14 C -0.078 4.078 15 N -0.971 5.971 16 Si 0.981 3.019 17 H -0.262 1.262 18 H -0.292 1.292 19 H -0.292 1.292 20 C -0.201 4.201 21 C 0.060 3.940 22 C -0.104 4.104 23 C -0.159 4.159 24 C -0.159 4.159 25 H 0.046 0.954 26 H 0.065 0.935 27 H 0.109 0.891 28 H 0.133 0.867 29 H 0.110 0.890 30 H 0.416 0.584 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.375 0.625 36 H 0.253 0.747 37 H 0.155 0.845 38 H 0.146 0.854 39 H 0.087 0.913 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.282 -22.134 26.608 35.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.017 4.017 3 N -0.056 5.056 4 N -0.104 5.104 5 C -0.197 4.197 6 C 0.385 3.615 7 O -0.452 6.452 8 N -0.351 5.351 9 C 0.003 3.997 10 C 0.024 3.976 11 N -0.389 5.389 12 C -0.380 4.380 13 H 0.100 0.900 14 C -0.270 4.270 15 N -0.621 5.621 16 Si 0.810 3.190 17 H -0.187 1.187 18 H -0.219 1.219 19 H -0.219 1.219 20 C -0.229 4.229 21 C -0.065 4.065 22 C -0.123 4.123 23 C -0.197 4.197 24 C -0.197 4.197 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.128 0.872 28 H 0.151 0.849 29 H 0.128 0.872 30 H 0.253 0.747 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.207 0.793 36 H 0.062 0.938 37 H 0.173 0.827 38 H 0.163 0.837 39 H 0.105 0.895 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.331 -22.295 25.776 35.084 hybrid contribution 0.333 1.049 -0.726 1.318 sum -7.999 -21.246 25.050 33.806 Atomic orbital electron populations 1.22163 0.92576 1.05019 1.02608 1.22492 0.96676 0.75102 1.07382 1.45927 1.44539 1.13443 1.01722 1.73469 1.17630 1.04385 1.14927 1.21581 1.10617 0.93142 0.94341 1.17225 0.76873 0.85624 0.81731 1.90762 1.49213 1.27424 1.77764 1.45598 1.66697 1.17889 1.04943 1.21249 1.00148 0.89776 0.88517 1.20809 0.98232 0.91566 0.87034 1.42415 1.80153 1.13782 1.02587 1.19686 1.36279 0.98674 0.83318 0.89967 1.25705 1.02348 0.95928 1.03028 1.69851 1.52242 1.04875 1.35116 0.84963 0.76826 0.77798 0.79458 1.18659 1.21920 1.21927 1.21499 1.09382 0.99230 0.92781 1.20828 1.03568 0.91410 0.90700 1.20503 1.08077 1.00891 0.82846 1.23166 0.98449 0.98003 1.00053 1.23173 0.92822 1.03547 1.00138 0.93481 0.91631 0.87232 0.84871 0.87179 0.74745 0.92247 0.92218 0.94573 0.94588 0.79330 0.93839 0.82692 0.83659 0.89487 0.85709 0.85669 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 10.24 71.98 0.74 -0.43 16 2 C 0.10 0.85 6.74 86.38 0.58 1.43 16 3 N -0.27 -4.91 3.30 -334.59 -1.10 -6.01 16 4 N -0.27 -6.83 11.67 -48.17 -0.56 -7.39 16 5 C -0.04 -1.16 7.13 42.46 0.30 -0.85 16 6 C 0.60 21.41 7.82 86.75 0.68 22.09 16 7 O -0.57 -24.38 16.93 -3.93 -0.07 -24.45 16 8 N -0.70 -23.24 5.55 -466.11 -2.59 -25.83 16 9 C 0.13 4.87 5.79 86.38 0.50 5.37 16 10 C 0.15 6.23 6.37 86.38 0.55 6.79 16 11 N -0.75 -39.62 5.60 -343.44 -1.92 -41.54 16 12 C -0.25 -14.16 9.99 84.04 0.84 -13.32 16 13 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 14 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 15 N -0.97 -61.09 13.06 21.65 0.28 -60.81 16 16 Si 0.98 46.73 29.55 68.60 2.03 48.76 16 17 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 18 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 19 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 20 C -0.20 -5.11 9.86 22.41 0.22 -4.89 16 21 C 0.06 1.10 6.60 41.41 0.27 1.37 16 22 C -0.10 -1.03 5.93 -11.54 -0.07 -1.10 16 23 C -0.16 -1.44 10.05 30.59 0.31 -1.13 16 24 C -0.16 -1.43 10.05 30.59 0.31 -1.12 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.11 0.19 8.14 -2.38 -0.02 0.17 16 28 H 0.13 0.25 7.13 -2.39 -0.02 0.23 16 29 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.42 11.94 8.20 -92.71 -0.76 11.18 16 31 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.37 21.34 7.67 -92.71 -0.71 20.63 16 36 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 37 H 0.16 3.88 8.06 -2.91 -0.02 3.86 16 38 H 0.15 0.56 7.18 -2.39 -0.02 0.54 16 39 H 0.09 1.09 7.94 -2.38 -0.02 1.07 16 40 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.09 1.08 7.97 -2.39 -0.02 1.07 16 Total: -1.00 -77.46 360.76 1.33 -76.13 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: -0.43 Total: 31.04 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 5.70 Total: 10.10 kcal Atomic # 7 Polarization: -135.68 SS G_CDS: -5.89 Total: -141.58 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.07 Total: -24.45 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -77.46 1.33 -76.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129104127.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.830 kcal (2) G-P(sol) polarization free energy of solvation -77.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds