Wall clock time and date at job start Tue Mar 31 2020 03:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.45055 * 2 1 4 4 C 1.53045 * 109.43337 * 119.97938 * 2 1 3 5 5 C 1.53186 * 109.34073 * 58.68749 * 4 2 1 6 6 N 1.46923 * 108.77539 * 54.61460 * 5 4 2 7 7 C 1.34787 * 120.62853 * 126.41537 * 6 5 4 8 8 O 1.21600 * 119.99932 * 176.29480 * 7 6 5 9 9 C 1.47430 * 119.99713 * 356.29231 * 7 6 5 10 10 C 1.41286 * 126.41544 * 42.96622 * 9 7 6 11 11 N 1.30451 * 108.02185 * 179.85202 * 10 9 7 12 12 N 1.39928 * 108.89485 * 0.41209 * 11 10 9 13 13 H 0.97010 * 125.75447 * 179.73247 * 12 11 10 14 14 C 1.34259 * 108.49577 * 359.73623 * 12 11 10 15 15 C 1.46920 * 118.74450 * 306.39464 * 6 5 4 16 16 C 1.53038 * 109.45903 * 240.02895 * 2 1 3 17 17 H 1.08998 * 109.49816 * 181.35619 * 16 2 1 18 18 C 1.53003 * 109.49388 * 61.29759 * 16 2 1 19 19 N 1.46506 * 109.46962 * 175.06174 * 18 16 2 20 20 C 1.36936 * 119.99874 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99871 * 359.97438 * 20 19 18 22 22 C 1.38816 * 120.00003 * 180.02562 * 20 19 18 23 23 N 1.31621 * 119.99943 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 120.00065 * 179.72457 * 22 20 19 25 25 H 1.48507 * 109.47446 * 59.99613 * 24 22 20 26 26 H 1.48508 * 109.47111 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47452 * 299.99634 * 24 22 20 28 28 H 1.08998 * 109.47013 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46922 * 299.97103 * 1 2 3 30 30 H 1.08997 * 109.47370 * 59.96681 * 1 2 3 31 31 H 1.09000 * 109.49357 * 298.72058 * 4 2 1 32 32 H 1.08999 * 109.49394 * 178.65805 * 4 2 1 33 33 H 1.09006 * 109.58471 * 294.83242 * 5 4 2 34 34 H 1.08997 * 109.59109 * 174.40487 * 5 4 2 35 35 H 1.08003 * 125.99186 * 0.02562 * 10 9 7 36 36 H 1.08001 * 126.29067 * 179.97438 * 14 12 11 37 37 H 1.09002 * 109.58850 * 293.81983 * 15 6 5 38 38 H 1.09003 * 109.58953 * 173.39391 * 15 6 5 39 39 H 1.09001 * 109.47262 * 55.06865 * 18 16 2 40 40 H 1.08999 * 109.47262 * 295.06164 * 18 16 2 41 41 H 0.97000 * 119.99680 * 0.02562 * 19 18 16 42 42 H 0.96994 * 120.00106 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0392 -0.7212 1.2502 5 6 1.4996 -2.1548 1.2640 6 7 1.8631 -2.8091 -0.0003 7 6 2.5168 -3.9879 -0.0003 8 8 2.7525 -4.5523 -1.0512 9 6 2.9459 -4.5927 1.2739 10 6 2.1877 -4.6688 2.4636 11 7 2.9098 -5.2765 3.3642 12 7 4.1496 -5.6049 2.8049 13 1 4.8751 -6.0591 3.2616 14 6 4.1662 -5.1854 1.5296 15 6 1.5002 -2.1545 -1.2645 16 6 2.0398 -0.7208 -1.2500 17 1 3.1295 -0.7423 -1.2386 18 6 1.5568 0.0193 -2.4989 19 7 2.1411 -0.6009 -3.6907 20 6 1.8494 -0.1051 -4.9334 21 1 1.1884 0.7428 -5.0349 22 6 2.4026 -0.6931 -6.0626 23 7 3.2079 -1.7269 -5.9389 24 14 1.9987 -0.0217 -7.7582 25 1 2.4298 1.3968 -7.8446 26 1 2.7112 -0.8188 -8.7890 27 1 0.5343 -0.1089 -7.9893 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5134 0.8903 30 1 -0.3634 0.5143 -0.8896 31 1 1.6946 -0.1941 2.1398 32 1 3.1289 -0.7426 1.2392 33 1 0.4146 -2.1358 1.3668 34 1 1.9382 -2.7024 2.0982 35 1 1.1849 -4.2925 2.6023 36 1 4.9839 -5.2918 0.8323 37 1 0.4153 -2.1355 -1.3679 38 1 1.9393 -2.7018 -2.0987 39 1 1.8651 1.0634 -2.4446 40 1 0.4697 -0.0360 -2.5564 41 1 2.7339 -1.3632 -3.5995 42 1 3.5947 -2.1375 -6.7279 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132659328.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:47 Heat of formation + Delta-G solvation = 26.760800 kcal Electronic energy + Delta-G solvation = -23920.667842 eV Core-core repulsion = 20515.539157 eV Total energy + Delta-G solvation = -3405.128685 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.45292 -41.01815 -39.04560 -36.60417 -34.89352 -33.46127 -32.81259 -31.68338 -31.02463 -28.64734 -27.27790 -25.95078 -24.92879 -23.49525 -22.89865 -22.41834 -20.76778 -19.78577 -18.95158 -18.76876 -17.48839 -16.93903 -16.73178 -16.27427 -15.97169 -15.72113 -15.54834 -15.43812 -15.21787 -14.87146 -14.46935 -14.30945 -14.14428 -13.75801 -13.66198 -13.01927 -12.85973 -12.80798 -12.57959 -12.41680 -12.20960 -12.11486 -11.98570 -11.87879 -11.67783 -11.32554 -11.17922 -10.91892 -10.89274 -10.67256 -9.85895 -9.46365 -8.97904 -7.92217 -5.22430 0.63189 1.18851 1.46367 1.50682 1.56834 1.76811 1.97489 2.31636 2.57335 3.40468 3.54658 3.74484 3.85203 3.89687 3.93712 4.06232 4.14071 4.27123 4.33565 4.38815 4.46903 4.58209 4.62307 4.69299 4.77382 4.83583 4.89356 4.97015 5.04459 5.15040 5.22402 5.28557 5.33125 5.36435 5.45624 5.50677 5.60820 5.66038 6.22120 6.28343 6.47365 6.54691 7.24789 7.33823 8.11024 8.33126 9.31128 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020231 B = 0.004019 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.701120 B = 6965.815194 C = 8055.218327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 H 0.078 0.922 4 C -0.122 4.122 5 C 0.093 3.907 6 N -0.599 5.599 7 C 0.583 3.417 8 O -0.596 6.596 9 C -0.308 4.308 10 C 0.088 3.912 11 N -0.311 5.311 12 N -0.448 5.448 13 H 0.460 0.540 14 C 0.132 3.868 15 C 0.131 3.869 16 C -0.089 4.089 17 H 0.049 0.951 18 C 0.160 3.840 19 N -0.748 5.748 20 C -0.247 4.247 21 H 0.079 0.921 22 C -0.078 4.078 23 N -0.972 5.972 24 Si 0.976 3.024 25 H -0.275 1.275 26 H -0.297 1.297 27 H -0.276 1.276 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.109 0.891 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.216 0.784 36 H 0.205 0.795 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.023 0.977 40 H 0.031 0.969 41 H 0.370 0.630 42 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.088 -1.886 24.841 25.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.098 4.098 3 H 0.096 0.904 4 C -0.160 4.160 5 C -0.028 4.028 6 N -0.330 5.330 7 C 0.373 3.627 8 O -0.478 6.478 9 C -0.324 4.324 10 C -0.099 4.099 11 N -0.133 5.133 12 N -0.155 5.155 13 H 0.308 0.692 14 C -0.022 4.022 15 C 0.008 3.992 16 C -0.109 4.109 17 H 0.068 0.932 18 C 0.033 3.967 19 N -0.391 5.391 20 C -0.379 4.379 21 H 0.097 0.903 22 C -0.270 4.270 23 N -0.622 5.622 24 Si 0.805 3.195 25 H -0.201 1.201 26 H -0.223 1.223 27 H -0.202 1.202 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.127 0.873 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.126 0.874 35 H 0.232 0.768 36 H 0.221 0.779 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.041 0.959 40 H 0.049 0.951 41 H 0.202 0.798 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.037 -2.477 25.425 25.626 hybrid contribution 0.726 -0.077 -2.310 2.423 sum -1.311 -2.554 23.114 23.292 Atomic orbital electron populations 1.21962 0.93926 1.02216 1.02524 1.21066 0.97003 0.99199 0.92568 0.90353 1.21924 1.00571 0.95051 0.98411 1.22380 1.01735 0.93747 0.84934 1.48022 1.56600 1.20264 1.08078 1.17913 0.76616 0.80335 0.87886 1.90818 1.58382 1.63319 1.35242 1.20148 0.98880 1.17441 0.95884 1.24420 1.00865 0.96130 0.88475 1.77109 0.92593 1.20780 1.22779 1.46171 1.14443 1.46060 1.08836 0.69187 1.23238 0.98737 0.92522 0.87699 1.21372 0.99607 0.92619 0.85619 1.21532 0.99307 0.94270 0.95743 0.93247 1.20871 0.96002 0.94768 0.85056 1.42680 1.56963 1.37441 1.01999 1.19641 1.22453 1.10740 0.85059 0.90343 1.25641 1.00551 0.98963 1.01876 1.69860 1.37198 1.25973 1.29197 0.85173 0.77648 0.77477 0.79221 1.20112 1.22331 1.20224 0.92434 0.90076 0.93395 0.87263 0.92623 0.88797 0.87410 0.76753 0.77873 0.90866 0.93275 0.95934 0.95148 0.79804 0.94137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.11 71.98 0.58 -2.31 16 2 C -0.08 -1.78 2.71 -10.77 -0.03 -1.81 16 3 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 4 C -0.12 -2.07 5.62 30.67 0.17 -1.90 16 5 C 0.09 1.63 5.24 86.36 0.45 2.08 16 6 N -0.60 -16.94 2.97 -822.79 -2.45 -19.38 16 7 C 0.58 18.93 7.59 86.66 0.66 19.59 16 8 O -0.60 -26.26 16.52 -4.03 -0.07 -26.32 16 9 C -0.31 -7.18 5.34 -20.15 -0.11 -7.29 16 10 C 0.09 1.57 9.57 85.65 0.82 2.39 16 11 N -0.31 -5.58 12.63 -56.27 -0.71 -6.29 16 12 N -0.45 -6.21 7.29 -56.32 -0.41 -6.62 16 13 H 0.46 2.93 8.96 -213.42 -1.91 1.02 16 14 C 0.13 2.38 12.01 84.28 1.01 3.40 16 15 C 0.13 4.61 5.04 86.36 0.44 5.04 16 16 C -0.09 -2.95 2.15 -10.72 -0.02 -2.97 16 17 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 18 C 0.16 6.51 5.19 86.38 0.45 6.96 16 19 N -0.75 -40.30 5.38 -343.44 -1.85 -42.15 16 20 C -0.25 -14.41 9.99 84.03 0.84 -13.57 16 21 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 22 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 23 N -0.97 -63.14 13.06 21.65 0.28 -62.86 16 24 Si 0.98 47.88 29.55 68.60 2.03 49.90 16 25 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 26 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 27 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 28 H 0.06 1.12 4.98 -2.39 -0.01 1.11 16 29 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.05 1.08 6.57 -2.39 -0.02 1.07 16 31 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.27 6.70 -2.38 -0.02 1.26 16 34 H 0.11 1.53 4.14 -2.39 -0.01 1.52 16 35 H 0.22 2.50 7.09 -2.91 -0.02 2.48 16 36 H 0.20 2.96 8.06 -2.91 -0.02 2.93 16 37 H 0.07 2.45 6.70 -2.39 -0.02 2.44 16 38 H 0.05 2.28 6.23 -2.39 -0.01 2.26 16 39 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.03 1.21 6.73 -2.39 -0.02 1.20 16 41 H 0.37 21.88 6.90 -92.71 -0.64 21.24 16 42 H 0.25 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -82.27 330.83 1.07 -81.20 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: -1.49 Total: 27.14 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 5.73 Total: 5.37 kcal Atomic # 7 Polarization: -132.16 SS G_CDS: -5.13 Total: -137.29 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.07 Total: -26.32 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.90 kcal Total: -82.27 1.07 -81.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132659328.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.957 kcal (2) G-P(sol) polarization free energy of solvation -82.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds