Wall clock time and date at job start Tue Mar 31 2020 03:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35204 * 126.00393 * 2 1 4 4 C 1.34575 * 107.61587 * 180.02562 * 3 2 1 5 5 C 1.40485 * 108.03765 * 0.04250 * 4 3 2 6 6 N 1.30126 * 108.23136 * 359.63540 * 5 4 3 7 7 C 1.50955 * 123.48179 * 179.81472 * 5 4 3 8 8 C 1.53371 * 108.20770 * 343.37453 * 7 5 4 9 9 C 1.53026 * 109.74975 * 50.64297 * 8 7 5 10 10 C 1.50886 * 128.32530 * 180.15716 * 4 3 2 11 11 H 1.09001 * 109.71596 * 283.01896 * 10 4 3 12 12 C 1.50705 * 109.71710 * 43.62065 * 10 4 3 13 13 O 1.21272 * 119.99533 * 119.99849 * 12 10 4 14 14 N 1.34770 * 120.00110 * 300.00337 * 12 10 4 15 15 C 1.46500 * 120.00202 * 180.02562 * 14 12 10 16 16 C 1.52997 * 109.47472 * 179.97438 * 15 14 12 17 17 N 1.46498 * 109.46953 * 179.97438 * 16 15 14 18 18 C 1.36942 * 119.99644 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00004 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99584 * 179.97438 * 18 17 16 21 21 N 1.31611 * 120.00329 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99972 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46809 * 89.99798 * 22 20 18 24 24 H 1.48495 * 109.47462 * 210.00165 * 22 20 18 25 25 H 1.48501 * 109.46922 * 330.00418 * 22 20 18 26 26 H 1.09002 * 109.47391 * 89.99390 * 1 2 3 27 27 H 1.09001 * 109.46813 * 329.99447 * 1 2 3 28 28 H 1.09004 * 109.47041 * 209.99574 * 1 2 3 29 29 H 1.07993 * 126.18763 * 0.02562 * 3 2 1 30 30 H 1.08992 * 109.71518 * 223.69515 * 7 5 4 31 31 H 1.08998 * 109.74677 * 103.07380 * 7 5 4 32 32 H 1.08996 * 109.42310 * 290.55715 * 8 7 5 33 33 H 1.09000 * 109.37620 * 170.70213 * 8 7 5 34 34 H 1.09005 * 109.42693 * 168.19966 * 9 8 7 35 35 H 1.09004 * 109.43101 * 48.35431 * 9 8 7 36 36 H 0.96999 * 119.99996 * 359.97438 * 14 12 10 37 37 H 1.09003 * 109.46888 * 299.99676 * 15 14 12 38 38 H 1.09002 * 109.46941 * 59.99126 * 15 14 12 39 39 H 1.09003 * 109.46950 * 299.99822 * 16 15 14 40 40 H 1.08994 * 109.47148 * 59.99321 * 16 15 14 41 41 H 0.96999 * 120.00321 * 359.97438 * 17 16 15 42 42 H 0.97009 * 120.00214 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2598 1.0938 0.0000 4 6 3.5368 0.6692 -0.0006 5 6 3.5282 -0.7356 -0.0019 6 7 2.2898 -1.1351 0.0057 7 6 4.7822 -1.5760 -0.0070 8 6 5.9561 -0.6828 -0.4269 9 6 5.9641 0.5922 0.4192 10 6 4.7981 1.4973 0.0024 11 1 4.9792 1.8953 -0.9961 12 6 4.6590 2.6321 0.9843 13 8 5.4308 2.7266 1.9150 14 7 3.6769 3.5417 0.8282 15 6 3.5420 4.6452 1.7824 16 6 2.3583 5.5266 1.3789 17 7 2.2231 6.6296 2.3335 18 6 1.2258 7.5544 2.1743 19 1 0.5387 7.4704 1.3454 20 6 1.0974 8.5993 3.0791 21 7 1.9344 8.7014 4.0896 22 14 -0.2635 9.8605 2.8625 23 1 -1.4767 9.4096 3.5906 24 1 0.1825 11.1684 3.4061 25 1 -0.5784 10.0059 1.4186 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 0.8900 0.5139 28 1 -0.3633 -0.8901 0.5138 29 1 1.9295 2.1219 0.0004 30 1 4.6722 -2.3963 -0.7162 31 1 4.9622 -1.9748 0.9913 32 1 5.8523 -0.4189 -1.4793 33 1 6.8917 -1.2220 -0.2789 34 1 6.9054 1.1211 0.2690 35 1 5.8608 0.3295 1.4720 36 1 3.0598 3.4663 0.0837 37 1 3.3721 4.2430 2.7812 38 1 4.4551 5.2405 1.7809 39 1 2.5287 5.9287 0.3802 40 1 1.4452 4.9315 1.3800 41 1 2.8400 6.7049 3.0782 42 1 1.8449 9.4318 4.7218 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132926744.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:10 Heat of formation + Delta-G solvation = 19.722740 kcal Electronic energy + Delta-G solvation = -23133.894129 eV Core-core repulsion = 19728.460251 eV Total energy + Delta-G solvation = -3405.433878 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.64230 -40.69218 -37.69344 -37.08316 -35.54464 -33.81569 -33.30830 -32.59842 -29.80110 -29.34553 -27.97565 -25.83118 -24.59903 -23.22378 -22.77653 -22.04188 -21.35843 -19.77548 -19.29918 -18.11965 -17.63600 -16.95379 -16.62827 -16.51600 -16.36429 -15.87017 -15.74127 -15.25391 -15.11969 -14.97519 -14.49632 -14.32524 -13.87130 -13.76298 -13.53927 -13.33918 -13.04293 -13.03376 -12.69819 -12.64273 -12.51178 -12.15446 -12.08333 -11.93335 -11.86601 -11.71005 -11.42480 -10.99100 -10.87358 -10.25867 -10.13248 -9.31353 -9.06656 -7.96807 -5.28256 0.86060 1.44561 1.48670 1.50758 1.59237 1.63836 1.77129 2.16076 2.58270 3.34237 3.37702 3.70420 3.73544 3.88140 4.01214 4.08454 4.15701 4.17501 4.22111 4.33638 4.42841 4.44450 4.52651 4.59037 4.64209 4.68535 4.72166 4.87615 5.03015 5.04438 5.13149 5.17779 5.22408 5.26120 5.36741 5.48736 5.51414 5.66738 6.04832 6.23775 6.50803 6.69863 7.22351 7.30141 8.02233 8.24800 9.26917 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021425 B = 0.003230 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.551748 B = 8667.799810 C = 9739.236800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.384 5.384 3 C 0.064 3.936 4 C -0.250 4.250 5 C 0.078 3.922 6 N -0.323 5.323 7 C -0.041 4.041 8 C -0.104 4.104 9 C -0.099 4.099 10 C -0.014 4.014 11 H 0.129 0.871 12 C 0.518 3.482 13 O -0.581 6.581 14 N -0.712 5.712 15 C 0.127 3.873 16 C 0.149 3.851 17 N -0.748 5.748 18 C -0.247 4.247 19 H 0.085 0.915 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.978 3.022 23 H -0.286 1.286 24 H -0.298 1.298 25 H -0.265 1.265 26 H 0.092 0.908 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.190 0.810 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.411 0.589 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.373 0.627 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.328 -21.681 -14.618 26.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.166 5.166 3 C -0.083 4.083 4 C -0.262 4.262 5 C -0.089 4.089 6 N -0.144 5.144 7 C -0.080 4.080 8 C -0.142 4.142 9 C -0.138 4.138 10 C -0.036 4.036 11 H 0.146 0.854 12 C 0.306 3.694 13 O -0.460 6.460 14 N -0.365 5.365 15 C 0.002 3.998 16 C 0.022 3.978 17 N -0.391 5.391 18 C -0.379 4.379 19 H 0.103 0.897 20 C -0.269 4.269 21 N -0.622 5.622 22 Si 0.807 3.193 23 H -0.213 1.213 24 H -0.224 1.224 25 H -0.189 1.189 26 H 0.110 0.890 27 H 0.123 0.877 28 H 0.109 0.891 29 H 0.207 0.793 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.249 0.751 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.205 0.795 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.715 -22.534 -14.055 26.613 hybrid contribution -0.433 1.792 0.506 1.912 sum 1.282 -20.742 -13.549 24.808 Atomic orbital electron populations 1.22184 0.72055 1.05646 1.04819 1.48813 1.07724 1.02892 1.57160 1.22440 0.90732 0.94252 1.00831 1.19741 0.93638 0.93937 1.18848 1.22769 0.93939 0.93935 0.98301 1.76982 1.01872 1.09359 1.26221 1.20295 0.87613 0.96678 1.03370 1.21546 0.98040 0.94399 1.00180 1.21408 0.96461 0.95853 1.00032 1.19742 0.93478 0.91387 0.99012 0.85355 1.21202 0.79341 0.82935 0.85948 1.90685 1.44519 1.76368 1.34458 1.45901 1.33228 1.26882 1.30519 1.21156 0.98506 0.87727 0.92426 1.20860 0.95095 0.88554 0.93257 1.42439 1.36647 1.28842 1.31159 1.19656 1.06593 1.03173 1.08458 0.89750 1.25665 1.01930 1.01654 0.97660 1.69837 1.40763 1.34354 1.17201 0.85074 0.78337 0.77855 0.78068 1.21324 1.22444 1.18906 0.88972 0.87667 0.89102 0.79316 0.88576 0.89766 0.90186 0.88495 0.90446 0.93023 0.75058 0.93238 0.92793 0.94284 0.94327 0.79524 0.93934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.15 11.47 127.77 1.47 2.62 16 2 N -0.38 -7.91 4.02 -369.97 -1.49 -9.40 16 3 C 0.06 1.26 10.49 83.33 0.87 2.13 16 4 C -0.25 -5.31 5.41 -20.10 -0.11 -5.42 16 5 C 0.08 1.72 7.10 43.44 0.31 2.03 16 6 N -0.32 -7.91 12.56 -47.13 -0.59 -8.50 16 7 C -0.04 -0.63 6.31 30.05 0.19 -0.44 16 8 C -0.10 -1.32 5.86 30.73 0.18 -1.14 16 9 C -0.10 -1.88 4.61 30.73 0.14 -1.74 16 10 C -0.01 -0.29 2.90 -12.10 -0.04 -0.32 16 11 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 12 C 0.52 14.48 7.09 87.66 0.62 15.10 16 13 O -0.58 -21.59 15.86 -3.01 -0.05 -21.63 16 14 N -0.71 -18.19 4.96 -463.07 -2.30 -20.49 16 15 C 0.13 4.26 5.79 86.38 0.50 4.76 16 16 C 0.15 5.47 6.37 86.38 0.55 6.02 16 17 N -0.75 -37.36 5.60 -343.46 -1.92 -39.29 16 18 C -0.25 -13.43 9.99 84.03 0.84 -12.59 16 19 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 20 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 21 N -0.97 -59.59 13.06 21.65 0.28 -59.31 16 22 Si 0.98 45.11 29.55 68.60 2.03 47.13 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 25 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 26 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.10 0.97 8.14 -2.39 -0.02 0.96 16 28 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.19 2.85 5.93 -2.91 -0.02 2.83 16 30 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 0.86 8.10 -2.39 -0.02 0.84 16 33 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.05 1.23 7.77 -2.38 -0.02 1.21 16 36 H 0.41 7.68 6.15 -92.71 -0.57 7.11 16 37 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.37 20.36 7.67 -92.71 -0.71 19.65 16 42 H 0.25 14.98 8.31 -92.70 -0.77 14.20 16 Total: -1.00 -76.20 345.29 1.71 -74.49 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: -0.24 Total: 29.87 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 5.99 Total: 7.12 kcal Atomic # 7 Polarization: -130.96 SS G_CDS: -6.02 Total: -136.98 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.05 Total: -21.63 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -76.20 1.71 -74.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132926744.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.214 kcal (2) G-P(sol) polarization free energy of solvation -76.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds