Wall clock time and date at job start Tue Mar 31 2020 02:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30785 * 125.72510 * 2 1 4 4 C 1.35069 * 109.26522 * 180.24762 * 3 2 1 5 5 C 1.33859 * 107.74845 * 359.67862 * 4 3 2 6 6 N 1.34404 * 125.71946 * 180.02562 * 2 1 3 7 7 C 1.46472 * 128.44828 * 0.14850 * 6 2 1 8 8 C 1.53281 * 108.82527 * 162.69762 * 7 6 2 9 9 H 1.08998 * 109.43442 * 290.63122 * 8 7 6 10 10 C 1.50700 * 109.43326 * 170.77198 * 8 7 6 11 11 O 1.21277 * 119.99718 * 0.02562 * 10 8 7 12 12 N 1.34773 * 119.99976 * 179.97438 * 10 8 7 13 13 C 1.46500 * 119.99730 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.47173 * 180.02562 * 13 12 10 15 15 N 1.46500 * 109.47173 * 180.02562 * 14 13 12 16 16 C 1.36941 * 119.99695 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99943 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99824 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00020 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99836 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46904 * 60.00085 * 20 18 16 22 22 H 1.48500 * 109.46889 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47248 * 299.99888 * 20 18 16 24 24 C 1.53116 * 109.70682 * 50.70350 * 8 7 6 25 25 C 1.50713 * 128.68210 * 180.39531 * 5 4 3 26 26 H 1.08998 * 109.47325 * 269.98415 * 1 2 3 27 27 H 1.09002 * 109.46908 * 29.97961 * 1 2 3 28 28 H 1.09000 * 109.47154 * 149.97689 * 1 2 3 29 29 H 1.08002 * 126.14848 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.60019 * 42.85553 * 7 6 2 31 31 H 1.08997 * 109.59783 * 282.53899 * 7 6 2 32 32 H 0.96999 * 120.00390 * 0.02562 * 12 10 8 33 33 H 1.08999 * 109.47225 * 299.99302 * 13 12 10 34 34 H 1.08996 * 109.47447 * 59.99976 * 13 12 10 35 35 H 1.09008 * 109.46787 * 299.99546 * 14 13 12 36 36 H 1.08996 * 109.47187 * 59.99532 * 14 13 12 37 37 H 0.96995 * 119.99906 * 359.97438 * 15 14 13 38 38 H 0.96995 * 120.00129 * 180.02562 * 19 18 16 39 39 H 1.09005 * 109.49579 * 50.04593 * 24 8 7 40 40 H 1.08996 * 109.50215 * 170.11455 * 24 8 7 41 41 H 1.09001 * 109.74401 * 44.62703 * 25 5 4 42 42 H 1.09007 * 109.74084 * 283.91221 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2707 1.0618 0.0000 4 6 3.5660 0.6790 -0.0055 5 6 3.5961 -0.6592 -0.0018 6 7 2.2917 -1.0912 -0.0005 7 6 1.8921 -2.5004 -0.0041 8 6 3.0907 -3.3533 -0.4347 9 1 3.3019 -3.1758 -1.4892 10 6 2.7692 -4.8109 -0.2272 11 8 1.6897 -5.1361 0.2198 12 7 3.6809 -5.7531 -0.5393 13 6 3.3681 -7.1701 -0.3381 14 6 4.5641 -8.0224 -0.7676 15 7 4.2511 -9.4394 -0.5669 16 6 5.1778 -10.3967 -0.8832 17 1 6.1392 -10.1070 -1.2809 18 6 4.8814 -11.7394 -0.6925 19 7 3.7100 -12.0923 -0.2073 20 14 6.1453 -13.0453 -1.1246 21 1 7.3739 -12.8310 -0.3184 22 1 5.5884 -14.3899 -0.8295 23 1 6.4786 -12.9530 -2.5688 24 6 4.3179 -2.9784 0.4007 25 6 4.7935 -1.5744 0.0028 26 1 -0.3634 -0.0003 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 4.4241 1.3349 -0.0065 30 1 1.0696 -2.6454 -0.7045 31 1 1.5758 -2.7932 0.9970 32 1 4.5442 -5.4930 -0.8972 33 1 3.1549 -7.3490 0.7158 34 1 2.4970 -7.4384 -0.9357 35 1 4.7778 -7.8436 -1.8214 36 1 5.4349 -7.7540 -0.1696 37 1 3.3877 -9.6995 -0.2093 38 1 3.5030 -13.0305 -0.0738 39 1 4.0543 -2.9868 1.4584 40 1 5.1156 -3.6985 0.2188 41 1 5.5282 -1.2160 0.7239 42 1 5.2376 -1.6047 -0.9922 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133001177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:02 Heat of formation + Delta-G solvation = -0.746588 kcal Electronic energy + Delta-G solvation = -22659.409494 eV Core-core repulsion = 19253.087999 eV Total energy + Delta-G solvation = -3406.321495 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.33803 -41.06811 -37.61471 -37.11206 -35.57841 -34.30062 -33.23299 -32.21851 -30.92483 -29.38296 -27.38154 -26.16196 -25.00233 -23.48827 -23.06283 -22.03976 -21.16902 -19.94695 -19.32604 -18.39184 -17.49570 -17.08854 -16.77109 -16.67802 -16.51478 -15.66523 -15.39668 -15.31530 -15.09307 -14.94036 -14.70912 -14.54650 -14.37739 -13.94112 -13.80557 -13.23596 -13.09368 -13.04391 -12.91979 -12.80558 -12.63488 -12.54650 -12.16669 -12.12363 -11.97768 -11.86584 -11.00307 -10.97920 -10.95455 -10.50764 -10.19287 -9.15161 -9.06548 -7.97104 -5.28307 1.06510 1.46807 1.48699 1.52102 1.57763 1.60156 2.09931 2.13574 2.57728 3.19847 3.37353 3.45961 3.53589 3.59256 3.77977 3.96542 4.02015 4.13664 4.19411 4.21443 4.24835 4.29982 4.41453 4.55102 4.59347 4.64712 4.68774 4.84126 4.92196 4.99652 5.00719 5.04428 5.12311 5.13847 5.32903 5.43839 5.48818 5.82904 6.22759 6.23826 6.43888 7.09640 7.11977 7.30212 8.02651 8.24490 9.26312 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.042294 B = 0.002405 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.876436 B =11638.172916 C =12190.620414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.195 3.805 3 N -0.533 5.533 4 C -0.049 4.049 5 C -0.028 4.028 6 N -0.455 5.455 7 C 0.124 3.876 8 C -0.106 4.106 9 H 0.130 0.870 10 C 0.523 3.477 11 O -0.581 6.581 12 N -0.704 5.704 13 C 0.127 3.873 14 C 0.148 3.852 15 N -0.748 5.748 16 C -0.248 4.248 17 H 0.084 0.916 18 C -0.077 4.077 19 N -0.971 5.971 20 Si 0.978 3.022 21 H -0.275 1.275 22 H -0.298 1.298 23 H -0.275 1.275 24 C -0.114 4.114 25 C -0.036 4.036 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.185 0.815 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.419 0.581 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.039 0.961 37 H 0.374 0.626 38 H 0.252 0.748 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.151 25.135 -1.217 25.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.067 4.067 3 N -0.253 5.253 4 C -0.195 4.195 5 C -0.142 4.142 6 N -0.139 5.139 7 C 0.001 3.999 8 C -0.127 4.127 9 H 0.148 0.852 10 C 0.309 3.691 11 O -0.461 6.461 12 N -0.356 5.356 13 C 0.003 3.997 14 C 0.021 3.979 15 N -0.391 5.391 16 C -0.379 4.379 17 H 0.102 0.898 18 C -0.270 4.270 19 N -0.621 5.621 20 Si 0.806 3.194 21 H -0.201 1.201 22 H -0.225 1.225 23 H -0.201 1.201 24 C -0.152 4.152 25 C -0.074 4.074 26 H 0.106 0.894 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.202 0.798 30 H 0.120 0.880 31 H 0.104 0.896 32 H 0.257 0.743 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.205 0.795 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.217 25.510 -0.964 25.529 hybrid contribution 0.514 -1.768 -0.043 1.842 sum 0.731 23.742 -1.007 23.775 Atomic orbital electron populations 1.20301 0.83169 1.04837 1.04346 1.23689 0.96881 0.81131 1.04992 1.70666 1.03073 1.29104 1.22473 1.22365 0.94788 0.93013 1.09312 1.21692 0.86270 0.95668 1.10565 1.45428 1.06640 1.07152 1.54720 1.21673 0.97648 0.76342 1.04206 1.21494 0.96989 0.89423 1.04818 0.85184 1.20633 0.83581 0.88171 0.76692 1.90737 1.25194 1.83598 1.46541 1.45661 1.19267 1.05341 1.65366 1.21167 0.97934 0.80054 1.00592 1.20866 0.95034 0.83341 0.98629 1.42428 1.17448 1.01081 1.78188 1.19610 0.96421 0.87254 1.34654 0.89845 1.25664 0.99157 0.99563 1.02567 1.69821 1.23386 1.16322 1.52590 0.85148 0.78187 0.77759 0.78261 1.20092 1.22451 1.20112 1.21723 0.95879 0.98341 0.99296 1.20350 0.91950 0.90209 1.04916 0.89386 0.88750 0.89517 0.79809 0.88006 0.89643 0.74338 0.92699 0.92731 0.94422 0.94271 0.79480 0.93922 0.91687 0.87490 0.87237 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.24 71.24 0.73 -0.24 16 2 C 0.20 4.15 7.94 138.25 1.10 5.25 16 3 N -0.53 -13.32 11.30 -188.31 -2.13 -15.45 16 4 C -0.05 -1.00 11.86 83.20 0.99 -0.02 16 5 C -0.03 -0.48 6.58 40.69 0.27 -0.22 16 6 N -0.46 -8.56 3.14 -499.94 -1.57 -10.13 16 7 C 0.12 2.10 5.38 86.48 0.47 2.57 16 8 C -0.11 -1.51 2.52 -11.41 -0.03 -1.53 16 9 H 0.13 1.38 8.11 -2.39 -0.02 1.36 16 10 C 0.52 11.56 7.15 87.66 0.63 12.18 16 11 O -0.58 -18.22 15.83 -3.02 -0.05 -18.27 16 12 N -0.70 -14.83 5.37 -463.07 -2.49 -17.32 16 13 C 0.13 3.89 5.79 86.38 0.50 4.39 16 14 C 0.15 5.18 6.37 86.38 0.55 5.73 16 15 N -0.75 -36.48 5.60 -343.43 -1.92 -38.40 16 16 C -0.25 -13.28 9.99 84.03 0.84 -12.44 16 17 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 18 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 19 N -0.97 -58.82 13.06 21.65 0.28 -58.54 16 20 Si 0.98 44.69 29.55 68.60 2.03 46.72 16 21 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 23 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 24 C -0.11 -1.22 5.22 30.80 0.16 -1.06 16 25 C -0.04 -0.34 6.31 30.01 0.19 -0.15 16 26 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.09 0.98 7.59 -2.39 -0.02 0.96 16 29 H 0.18 2.83 8.06 -2.91 -0.02 2.81 16 30 H 0.10 1.63 7.72 -2.39 -0.02 1.61 16 31 H 0.09 1.66 7.81 -2.39 -0.02 1.64 16 32 H 0.42 5.83 7.79 -92.71 -0.72 5.11 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.37 19.83 7.67 -92.71 -0.71 19.12 16 38 H 0.25 14.85 8.31 -92.71 -0.77 14.07 16 39 H 0.06 0.89 8.12 -2.38 -0.02 0.87 16 40 H 0.11 0.74 7.30 -2.39 -0.02 0.72 16 41 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 Total: -1.00 -74.95 347.48 0.61 -74.34 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -0.40 Total: 26.46 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 6.85 Total: 10.59 kcal Atomic # 7 Polarization: -132.02 SS G_CDS: -7.83 Total: -139.84 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.05 Total: -18.27 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -74.95 0.61 -74.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133001177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.596 kcal (2) G-P(sol) polarization free energy of solvation -74.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds