Wall clock time and date at job start Tue Mar 31 2020 02:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30790 * 125.72416 * 2 1 4 4 C 1.34425 * 109.32172 * 180.02562 * 3 2 1 5 5 C 1.33857 * 107.79759 * 0.02562 * 4 3 2 6 6 N 1.34402 * 125.72415 * 179.97438 * 2 1 3 7 7 C 1.46450 * 128.46127 * 359.91940 * 6 2 1 8 8 C 1.53282 * 108.70496 * 197.39967 * 7 6 2 9 9 C 1.53115 * 109.66667 * 309.15275 * 8 7 6 10 10 H 1.08999 * 109.49612 * 309.94352 * 9 8 7 11 11 C 1.50695 * 109.49718 * 189.87924 * 9 8 7 12 12 O 1.21288 * 120.00355 * 359.97438 * 11 9 8 13 13 N 1.34781 * 120.00230 * 180.02562 * 11 9 8 14 14 C 1.46492 * 120.00294 * 180.02562 * 13 11 9 15 15 C 1.53000 * 109.47397 * 179.97438 * 14 13 11 16 16 N 1.46503 * 109.47370 * 179.97438 * 15 14 13 17 17 C 1.36933 * 120.00145 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00051 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00092 * 180.02562 * 17 16 15 20 20 N 1.31611 * 119.99774 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99910 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47183 * 90.00012 * 21 19 17 23 23 H 1.48497 * 109.46914 * 210.00213 * 21 19 17 24 24 H 1.48505 * 109.47034 * 329.99814 * 21 19 17 25 25 C 1.50707 * 128.68330 * 179.97438 * 5 4 3 26 26 H 1.08994 * 109.47333 * 270.04872 * 1 2 3 27 27 H 1.09006 * 109.46727 * 30.04867 * 1 2 3 28 28 H 1.09000 * 109.46715 * 150.03998 * 1 2 3 29 29 H 1.08003 * 126.09960 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.63868 * 77.60628 * 7 6 2 31 31 H 1.09003 * 109.55647 * 317.14303 * 7 6 2 32 32 H 1.09002 * 109.43441 * 189.10158 * 8 7 6 33 33 H 1.08996 * 109.42822 * 69.19738 * 8 7 6 34 34 H 0.96999 * 119.99836 * 359.97438 * 13 11 9 35 35 H 1.09006 * 109.47008 * 299.99912 * 14 13 11 36 36 H 1.09004 * 109.47724 * 59.99244 * 14 13 11 37 37 H 1.08999 * 109.46698 * 299.99385 * 15 14 13 38 38 H 1.08995 * 109.46968 * 59.99550 * 15 14 13 39 39 H 0.97005 * 119.99977 * 0.02562 * 16 15 14 40 40 H 0.97001 * 119.99697 * 180.02562 * 20 19 17 41 41 H 1.09004 * 109.74608 * 76.08231 * 25 5 4 42 42 H 1.09007 * 109.74554 * 315.36430 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2707 1.0618 0.0000 4 6 3.5602 0.6822 -0.0006 5 6 3.5928 -0.6560 -0.0015 6 7 2.2918 -1.0911 0.0005 7 6 1.8927 -2.5002 0.0027 8 6 3.0922 -3.3502 0.4366 9 6 4.3190 -2.9746 -0.3990 10 1 4.0562 -2.9860 -1.4567 11 6 5.4239 -3.9672 -0.1445 12 8 5.2487 -4.8848 0.6291 13 7 6.6074 -3.8349 -0.7758 14 6 7.6813 -4.8002 -0.5289 15 6 8.9070 -4.4243 -1.3639 16 7 9.9812 -5.3893 -1.1165 17 6 11.1832 -5.2553 -1.7586 18 1 11.3395 -4.4381 -2.4472 19 6 12.2008 -6.1700 -1.5246 20 7 12.0101 -7.1662 -0.6860 21 14 13.8408 -5.9868 -2.4000 22 1 14.7479 -5.1436 -1.5806 23 1 14.4509 -7.3268 -2.5936 24 1 13.6273 -5.3445 -3.7219 25 6 4.7918 -1.5690 -0.0029 26 1 -0.3634 0.0009 1.0276 27 1 -0.3633 0.8896 -0.5146 28 1 -0.3633 -0.8904 -0.5132 29 1 4.4171 1.3397 -0.0003 30 1 1.5797 -2.7939 -0.9992 31 1 1.0696 -2.6452 0.7025 32 1 2.8617 -4.4052 0.2884 33 1 3.3022 -3.1695 1.4907 34 1 6.7478 -3.1009 -1.3942 35 1 7.9443 -4.7883 0.5289 36 1 7.3440 -5.7984 -0.8081 37 1 8.6436 -4.4365 -2.4216 38 1 9.2444 -3.4261 -1.0850 39 1 9.8406 -6.1236 -0.4984 40 1 12.7213 -7.8051 -0.5221 41 1 5.2350 -1.5964 0.9926 42 1 5.5266 -1.2108 -0.7240 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133870766.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:00 Heat of formation + Delta-G solvation = 23.483008 kcal Electronic energy + Delta-G solvation = -22602.721974 eV Core-core repulsion = 19197.451153 eV Total energy + Delta-G solvation = -3405.270821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.67505 -39.97322 -36.69969 -35.69165 -34.06709 -33.61276 -31.65287 -31.15025 -30.07271 -28.08669 -26.72209 -24.64635 -23.91175 -22.71942 -21.51672 -20.96393 -20.32050 -19.26057 -17.48822 -17.07894 -17.01631 -16.28072 -15.63919 -15.62104 -14.66035 -14.62524 -14.39190 -14.28536 -14.15781 -13.81882 -13.56348 -13.30267 -13.22061 -13.11248 -12.94479 -12.71514 -12.23098 -12.11625 -11.57806 -11.50797 -11.39091 -11.15102 -10.86354 -10.83670 -10.26581 -10.14362 -9.90131 -9.78426 -9.71900 -9.05642 -8.90048 -8.44795 -7.03492 -5.83042 -3.14001 1.75074 2.43969 2.54264 2.88169 3.08314 3.40207 3.45190 3.47077 3.99912 4.17179 4.18402 4.23083 4.41625 4.55065 4.63620 4.71389 4.80509 4.94091 5.03570 5.11646 5.16493 5.29484 5.34654 5.42534 5.46166 5.46846 5.51202 5.65168 5.70821 5.72968 5.90334 6.08673 6.11272 6.40318 6.51253 6.64566 6.66613 6.93769 7.48590 7.62668 7.84847 8.17380 8.34479 9.45832 10.00084 10.34640 11.39477 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037206 B = 0.002417 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.394279 B =11582.924352 C =12164.759511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.204 3.796 3 N -0.494 5.494 4 C -0.019 4.019 5 C -0.023 4.023 6 N -0.452 5.452 7 C 0.103 3.897 8 C -0.114 4.114 9 C -0.111 4.111 10 H 0.102 0.898 11 C 0.517 3.483 12 O -0.539 6.539 13 N -0.720 5.720 14 C 0.110 3.890 15 C 0.145 3.855 16 N -0.730 5.730 17 C -0.245 4.245 18 H 0.072 0.928 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.036 4.036 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.171 0.829 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.400 0.600 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.024 0.976 38 H 0.025 0.975 39 H 0.386 0.614 40 H 0.257 0.743 41 H 0.089 0.911 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.197 12.455 0.481 27.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.058 4.058 3 N -0.213 5.213 4 C -0.166 4.166 5 C -0.137 4.137 6 N -0.137 5.137 7 C -0.019 4.019 8 C -0.152 4.152 9 C -0.133 4.133 10 H 0.120 0.880 11 C 0.302 3.698 12 O -0.415 6.415 13 N -0.371 5.371 14 C -0.014 4.014 15 C 0.016 3.984 16 N -0.375 5.375 17 C -0.376 4.376 18 H 0.090 0.910 19 C -0.208 4.208 20 N -0.578 5.578 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.074 4.074 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.188 0.812 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.234 0.766 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.042 0.958 38 H 0.043 0.957 39 H 0.220 0.780 40 H 0.067 0.933 41 H 0.107 0.893 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -24.518 12.485 0.932 27.529 hybrid contribution 1.361 -0.693 -0.588 1.637 sum -23.156 11.791 0.344 25.988 Atomic orbital electron populations 1.20159 0.85000 1.03916 1.03431 1.23120 0.95602 0.81285 1.05761 1.70459 1.01999 1.28084 1.20797 1.21844 0.94857 0.91882 1.08055 1.20971 0.85327 0.95303 1.12079 1.45301 1.06292 1.07263 1.54823 1.22047 0.98934 0.77625 1.03310 1.21691 0.91778 1.00790 1.00930 1.21427 0.94829 0.94577 1.02427 0.88004 1.20286 0.83150 0.85800 0.80592 1.90729 1.81319 1.33719 1.35775 1.45947 1.13586 1.31280 1.46251 1.21608 0.86610 0.92159 1.00986 1.20756 0.87427 0.94058 0.96122 1.42189 1.10719 1.30939 1.53633 1.19186 0.89733 1.09112 1.19550 0.91012 1.24789 0.98633 0.97568 0.99860 1.69664 1.33225 1.16328 1.38627 0.86143 0.83837 0.76857 0.79036 1.21585 1.21678 1.20689 1.20195 0.93394 0.90082 1.03766 0.90251 0.89194 0.90968 0.81212 0.89513 0.88706 0.88182 0.89990 0.76575 0.91179 0.91244 0.95817 0.95739 0.78008 0.93336 0.89254 0.88666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.24 36.01 0.37 -0.02 16 2 C 0.20 2.01 7.94 -155.75 -1.24 0.77 16 3 N -0.49 -6.07 11.27 -11.02 -0.12 -6.19 16 4 C -0.02 -0.21 11.84 -17.95 -0.21 -0.42 16 5 C -0.02 -0.22 6.57 -81.73 -0.54 -0.76 16 6 N -0.45 -4.05 3.13 -109.45 -0.34 -4.39 16 7 C 0.10 0.64 6.60 -3.92 -0.03 0.61 16 8 C -0.11 -0.90 4.66 -26.53 -0.12 -1.02 16 9 C -0.11 -0.95 2.54 -91.46 -0.23 -1.18 16 10 H 0.10 0.74 8.12 -51.93 -0.42 0.32 16 11 C 0.52 6.40 7.13 -10.99 -0.08 6.32 16 12 O -0.54 -8.88 15.82 5.55 0.09 -8.80 16 13 N -0.72 -8.81 5.46 -60.29 -0.33 -9.14 16 14 C 0.11 1.79 5.79 -4.05 -0.02 1.76 16 15 C 0.14 2.73 6.37 -4.04 -0.03 2.70 16 16 N -0.73 -18.22 5.60 -59.91 -0.34 -18.56 16 17 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 18 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 21 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C -0.04 -0.29 5.45 -27.62 -0.15 -0.44 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.27 7.95 -51.93 -0.41 -0.14 16 29 H 0.17 1.52 8.06 -52.48 -0.42 1.09 16 30 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.10 0.81 7.77 -51.93 -0.40 0.40 16 33 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 34 H 0.40 3.77 8.20 -40.82 -0.33 3.44 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.39 10.22 7.67 -40.82 -0.31 9.91 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.09 0.78 8.11 -51.93 -0.42 0.36 16 42 H 0.09 0.62 7.95 -51.93 -0.41 0.21 16 LS Contribution 349.06 15.07 5.26 5.26 Total: -1.00 -35.21 349.06 -9.10 -44.31 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.49 Total: 6.73 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -2.52 Total: 0.98 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: -0.41 Total: -65.58 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.21 -9.10 -44.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133870766.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.795 kcal (2) G-P(sol) polarization free energy of solvation -35.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds