Wall clock time and date at job start Tue Mar 31 2020 02:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30790 * 125.72416 * 2 1 4 4 C 1.34425 * 109.32172 * 180.02562 * 3 2 1 5 5 C 1.33857 * 107.79759 * 0.02562 * 4 3 2 6 6 N 1.34402 * 125.72415 * 179.97438 * 2 1 3 7 7 C 1.46450 * 128.46127 * 359.91940 * 6 2 1 8 8 C 1.53282 * 108.70496 * 197.39967 * 7 6 2 9 9 C 1.53115 * 109.66667 * 309.15275 * 8 7 6 10 10 H 1.08999 * 109.49612 * 309.94352 * 9 8 7 11 11 C 1.50695 * 109.49718 * 189.87924 * 9 8 7 12 12 O 1.21288 * 120.00355 * 359.97438 * 11 9 8 13 13 N 1.34781 * 120.00230 * 180.02562 * 11 9 8 14 14 C 1.46492 * 120.00294 * 180.02562 * 13 11 9 15 15 C 1.53000 * 109.47397 * 179.97438 * 14 13 11 16 16 N 1.46503 * 109.47370 * 179.97438 * 15 14 13 17 17 C 1.36933 * 120.00145 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00051 * 0.02562 * 17 16 15 19 19 C 1.38811 * 120.00092 * 180.02562 * 17 16 15 20 20 N 1.31611 * 119.99774 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99910 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47183 * 90.00012 * 21 19 17 23 23 H 1.48497 * 109.46914 * 210.00213 * 21 19 17 24 24 H 1.48505 * 109.47034 * 329.99814 * 21 19 17 25 25 C 1.50707 * 128.68330 * 179.97438 * 5 4 3 26 26 H 1.08994 * 109.47333 * 270.04872 * 1 2 3 27 27 H 1.09006 * 109.46727 * 30.04867 * 1 2 3 28 28 H 1.09000 * 109.46715 * 150.03998 * 1 2 3 29 29 H 1.08003 * 126.09960 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.63868 * 77.60628 * 7 6 2 31 31 H 1.09003 * 109.55647 * 317.14303 * 7 6 2 32 32 H 1.09002 * 109.43441 * 189.10158 * 8 7 6 33 33 H 1.08996 * 109.42822 * 69.19738 * 8 7 6 34 34 H 0.96999 * 119.99836 * 359.97438 * 13 11 9 35 35 H 1.09006 * 109.47008 * 299.99912 * 14 13 11 36 36 H 1.09004 * 109.47724 * 59.99244 * 14 13 11 37 37 H 1.08999 * 109.46698 * 299.99385 * 15 14 13 38 38 H 1.08995 * 109.46968 * 59.99550 * 15 14 13 39 39 H 0.97005 * 119.99977 * 0.02562 * 16 15 14 40 40 H 0.97001 * 119.99697 * 180.02562 * 20 19 17 41 41 H 1.09004 * 109.74608 * 76.08231 * 25 5 4 42 42 H 1.09007 * 109.74554 * 315.36430 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2707 1.0618 0.0000 4 6 3.5602 0.6822 -0.0006 5 6 3.5928 -0.6560 -0.0015 6 7 2.2918 -1.0911 0.0005 7 6 1.8927 -2.5002 0.0027 8 6 3.0922 -3.3502 0.4366 9 6 4.3190 -2.9746 -0.3990 10 1 4.0562 -2.9860 -1.4567 11 6 5.4239 -3.9672 -0.1445 12 8 5.2487 -4.8848 0.6291 13 7 6.6074 -3.8349 -0.7758 14 6 7.6813 -4.8002 -0.5289 15 6 8.9070 -4.4243 -1.3639 16 7 9.9812 -5.3893 -1.1165 17 6 11.1832 -5.2553 -1.7586 18 1 11.3395 -4.4381 -2.4472 19 6 12.2008 -6.1700 -1.5246 20 7 12.0101 -7.1662 -0.6860 21 14 13.8408 -5.9868 -2.4000 22 1 14.7479 -5.1436 -1.5806 23 1 14.4509 -7.3268 -2.5936 24 1 13.6273 -5.3445 -3.7219 25 6 4.7918 -1.5690 -0.0029 26 1 -0.3634 0.0009 1.0276 27 1 -0.3633 0.8896 -0.5146 28 1 -0.3633 -0.8904 -0.5132 29 1 4.4171 1.3397 -0.0003 30 1 1.5797 -2.7939 -0.9992 31 1 1.0696 -2.6452 0.7025 32 1 2.8617 -4.4052 0.2884 33 1 3.3022 -3.1695 1.4907 34 1 6.7478 -3.1009 -1.3942 35 1 7.9443 -4.7883 0.5289 36 1 7.3440 -5.7984 -0.8081 37 1 8.6436 -4.4365 -2.4216 38 1 9.2444 -3.4261 -1.0850 39 1 9.8406 -6.1236 -0.4984 40 1 12.7213 -7.8051 -0.5221 41 1 5.2350 -1.5964 0.9926 42 1 5.5266 -1.2108 -0.7240 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133870766.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:00 Heat of formation + Delta-G solvation = -1.189912 kcal Electronic energy + Delta-G solvation = -22603.791872 eV Core-core repulsion = 19197.451153 eV Total energy + Delta-G solvation = -3406.340719 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.36298 -41.00628 -37.64105 -37.05386 -35.54991 -34.42110 -33.13450 -32.16773 -30.73090 -29.52442 -27.57769 -25.69622 -25.22571 -23.79719 -22.96169 -21.63307 -21.32051 -19.94707 -19.32536 -18.16999 -17.72059 -17.10444 -16.74876 -16.70289 -16.45747 -15.68789 -15.38914 -15.16493 -14.96680 -14.95946 -14.71713 -14.53402 -14.45320 -13.92140 -13.71556 -13.15209 -13.08627 -13.04336 -12.89343 -12.77671 -12.65765 -12.53292 -12.18566 -12.09216 -12.05598 -11.86491 -11.10188 -10.99474 -10.79868 -10.45951 -10.16372 -9.15646 -9.06830 -7.97451 -5.28607 1.06784 1.48515 1.50637 1.53519 1.58983 1.83172 2.04007 2.13821 2.57265 3.30486 3.36993 3.52128 3.55441 3.63487 3.76453 3.95650 4.03151 4.12748 4.19948 4.21703 4.26752 4.33481 4.47488 4.59359 4.60792 4.68679 4.71956 4.75518 4.86875 4.94681 5.03783 5.07975 5.09884 5.13825 5.36653 5.42594 5.48983 5.80640 6.23596 6.31271 6.49604 7.13645 7.18140 7.29886 8.02118 8.24404 9.26157 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037206 B = 0.002417 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.394279 B =11582.924352 C =12164.759511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.199 3.801 3 N -0.536 5.536 4 C -0.043 4.043 5 C -0.026 4.026 6 N -0.454 5.454 7 C 0.105 3.895 8 C -0.112 4.112 9 C -0.098 4.098 10 H 0.125 0.875 11 C 0.518 3.482 12 O -0.581 6.581 13 N -0.708 5.708 14 C 0.127 3.873 15 C 0.148 3.852 16 N -0.748 5.748 17 C -0.247 4.247 18 H 0.083 0.917 19 C -0.078 4.078 20 N -0.971 5.971 21 Si 0.979 3.021 22 H -0.286 1.286 23 H -0.297 1.297 24 H -0.266 1.266 25 C -0.030 4.030 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.178 0.822 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.417 0.583 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.374 0.626 40 H 0.252 0.748 41 H 0.081 0.919 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.419 13.473 -0.899 28.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.064 4.064 3 N -0.257 5.257 4 C -0.190 4.190 5 C -0.141 4.141 6 N -0.138 5.138 7 C -0.016 4.016 8 C -0.150 4.150 9 C -0.119 4.119 10 H 0.143 0.857 11 C 0.305 3.695 12 O -0.461 6.461 13 N -0.361 5.361 14 C 0.003 3.997 15 C 0.021 3.979 16 N -0.391 5.391 17 C -0.378 4.378 18 H 0.101 0.899 19 C -0.270 4.270 20 N -0.621 5.621 21 Si 0.807 3.193 22 H -0.213 1.213 23 H -0.224 1.224 24 H -0.190 1.190 25 C -0.069 4.069 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.115 0.885 29 H 0.195 0.805 30 H 0.127 0.873 31 H 0.134 0.866 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.254 0.746 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.205 0.795 40 H 0.061 0.939 41 H 0.099 0.901 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -25.772 13.565 -0.487 29.128 hybrid contribution 1.650 -0.963 -0.139 1.915 sum -24.122 12.602 -0.626 27.223 Atomic orbital electron populations 1.20322 0.82445 1.05143 1.04481 1.23812 0.97057 0.81009 1.04483 1.70429 1.02846 1.29786 1.22594 1.22127 0.95033 0.92833 1.08975 1.21102 0.86113 0.95123 1.11751 1.45492 1.05906 1.08150 1.54211 1.22241 0.98488 0.75677 1.05225 1.21652 0.92286 1.01186 0.99884 1.21393 0.93361 0.93295 1.03894 0.85704 1.20945 0.83469 0.85701 0.79336 1.90718 1.82037 1.35756 1.37600 1.45760 1.12706 1.30958 1.46626 1.21145 0.86807 0.92403 0.99390 1.20865 0.86774 0.93125 0.97128 1.42436 1.11652 1.31769 1.53258 1.19644 0.90560 1.08739 1.18902 0.89892 1.25671 1.02404 0.97724 1.01233 1.69831 1.34107 1.17461 1.40690 0.85069 0.79384 0.76382 0.78466 1.21322 1.22355 1.19022 1.20195 0.93292 0.89450 1.03935 0.89187 0.89205 0.88511 0.80484 0.87261 0.86562 0.88231 0.91661 0.74554 0.92867 0.92803 0.94457 0.94392 0.79469 0.93923 0.90084 0.86747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.24 71.24 0.73 0.13 16 2 C 0.20 3.58 7.94 138.25 1.10 4.68 16 3 N -0.54 -12.86 11.27 -188.77 -2.13 -14.99 16 4 C -0.04 -0.92 11.84 83.30 0.99 0.07 16 5 C -0.03 -0.47 6.57 40.73 0.27 -0.20 16 6 N -0.45 -7.14 3.13 -500.18 -1.57 -8.71 16 7 C 0.10 0.98 6.60 86.48 0.57 1.55 16 8 C -0.11 -1.56 4.66 30.73 0.14 -1.42 16 9 C -0.10 -1.46 2.54 -11.34 -0.03 -1.49 16 10 H 0.13 1.37 8.12 -2.39 -0.02 1.35 16 11 C 0.52 12.17 7.13 87.65 0.63 12.80 16 12 O -0.58 -19.07 15.82 -3.05 -0.05 -19.12 16 13 N -0.71 -16.18 5.46 -463.06 -2.53 -18.71 16 14 C 0.13 4.09 5.79 86.38 0.50 4.59 16 15 C 0.15 5.39 6.37 86.38 0.55 5.94 16 16 N -0.75 -37.28 5.60 -343.45 -1.92 -39.20 16 17 C -0.25 -13.47 9.99 84.03 0.84 -12.63 16 18 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 19 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 20 N -0.97 -59.41 13.06 21.65 0.28 -59.13 16 21 Si 0.98 45.35 29.55 68.60 2.03 47.38 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 23 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 25 C -0.03 -0.44 5.45 30.02 0.16 -0.27 16 26 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.10 0.40 7.95 -2.39 -0.02 0.38 16 29 H 0.18 3.15 8.06 -2.91 -0.02 3.13 16 30 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.12 0.63 8.14 -2.39 -0.02 0.62 16 32 H 0.10 1.44 7.77 -2.39 -0.02 1.42 16 33 H 0.06 1.14 8.11 -2.39 -0.02 1.12 16 34 H 0.42 6.73 8.20 -92.71 -0.76 5.97 16 35 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.37 20.20 7.67 -92.70 -0.71 19.49 16 40 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 41 H 0.08 1.33 8.11 -2.38 -0.02 1.31 16 42 H 0.11 1.19 7.95 -2.38 -0.02 1.17 16 Total: -1.00 -76.93 349.06 0.59 -76.34 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: -0.44 Total: 26.38 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 6.91 Total: 9.76 kcal Atomic # 7 Polarization: -132.87 SS G_CDS: -7.86 Total: -140.74 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.05 Total: -19.12 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -76.93 0.59 -76.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133870766.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.147 kcal (2) G-P(sol) polarization free energy of solvation -76.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds