Wall clock time and date at job start Tue Mar 31 2020 03:19:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46500 * 109.46810 * 2 1
4 4 N 1.39930 * 125.75723 * 89.97501 * 3 2 1
5 5 C 1.30446 * 108.89966 * 180.02562 * 4 3 2
6 6 C 1.41294 * 108.02233 * 0.02562 * 5 4 3
7 7 C 1.47432 * 126.41588 * 179.97438 * 6 5 4
8 8 O 1.21604 * 120.00029 * 185.40847 * 7 6 5
9 9 N 1.34773 * 119.99883 * 5.41742 * 7 6 5
10 10 C 1.46505 * 119.99993 * 180.02562 * 9 7 6
11 11 C 1.52999 * 109.47055 * 179.97438 * 10 9 7
12 12 N 1.46497 * 109.47142 * 179.97438 * 11 10 9
13 13 C 1.36930 * 120.00287 * 179.97438 * 12 11 10
14 14 H 1.07996 * 120.00022 * 359.97438 * 13 12 11
15 15 C 1.38815 * 120.00190 * 180.02562 * 13 12 11
16 16 N 1.31616 * 120.00089 * 180.02562 * 15 13 12
17 17 Si 1.86799 * 119.99871 * 0.02562 * 15 13 12
18 18 H 1.48496 * 109.47241 * 90.00038 * 17 15 13
19 19 H 1.48504 * 109.47173 * 210.00011 * 17 15 13
20 20 H 1.48501 * 109.47189 * 330.00199 * 17 15 13
21 21 C 1.34265 * 125.74855 * 270.30458 * 3 2 1
22 22 C 1.50701 * 126.29724 * 359.96519 * 21 3 2
23 23 C 1.52998 * 117.49311 * 311.58475 * 22 21 3
24 24 C 1.52997 * 117.49649 * 242.92400 * 22 21 3
25 25 H 1.08999 * 109.47278 * 300.00238 * 1 2 3
26 26 H 1.08994 * 109.47277 * 60.00343 * 1 2 3
27 27 H 1.09004 * 109.47284 * 179.97438 * 1 2 3
28 28 H 1.08999 * 109.47278 * 239.99762 * 2 1 3
29 29 H 1.08994 * 109.47277 * 119.99657 * 2 1 3
30 30 H 1.07995 * 125.99145 * 180.02562 * 5 4 3
31 31 H 0.97002 * 120.00016 * 359.97438 * 9 7 6
32 32 H 1.08997 * 109.46458 * 299.99109 * 10 9 7
33 33 H 1.08996 * 109.47200 * 59.99265 * 10 9 7
34 34 H 1.09000 * 109.46926 * 299.99650 * 11 10 9
35 35 H 1.08996 * 109.47321 * 59.99824 * 11 10 9
36 36 H 0.97004 * 119.99780 * 0.02562 * 12 11 10
37 37 H 0.97000 * 120.00102 * 179.97438 * 16 15 13
38 38 H 1.08997 * 115.55067 * 97.24840 * 22 21 3
39 39 H 1.08995 * 117.50231 * 359.97438 * 23 22 21
40 40 H 1.09001 * 117.49590 * 145.02383 * 23 22 21
41 41 H 1.09005 * 117.50009 * 214.97239 * 24 22 21
42 42 H 1.08995 * 117.50329 * 359.97325 * 24 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0182 1.3812 0.0000
4 7 2.2903 2.1523 1.1355
5 6 2.7060 3.3295 0.7572
6 6 2.7152 3.3567 -0.6554
7 6 3.1155 4.4922 -1.5063
8 8 2.9855 4.4229 -2.7134
9 7 3.6257 5.6069 -0.9464
10 6 4.0230 6.7355 -1.7919
11 6 4.5653 7.8647 -0.9135
12 7 4.9632 8.9929 -1.7589
13 6 5.4806 10.1259 -1.1900
14 1 5.5951 10.1878 -0.1179
15 6 5.8571 11.1952 -1.9911
16 7 6.3549 12.2839 -1.4443
17 14 5.6571 11.0889 -3.8453
18 1 4.3149 11.5958 -4.2283
19 1 6.7033 11.9115 -4.5041
20 1 5.7940 9.6748 -4.2777
21 6 2.2742 2.1227 -1.0897
22 6 2.1129 1.6870 -2.5233
23 6 2.7106 0.3364 -2.9225
24 6 3.3715 1.6351 -3.3917
25 1 -0.3634 0.5139 0.8899
26 1 -0.3633 0.5137 -0.8900
27 1 -0.3634 -1.0277 -0.0005
28 1 1.8933 -0.5139 -0.8899
29 1 1.8933 -0.5137 0.8900
30 1 2.9928 4.1411 1.4094
31 1 3.7292 5.6622 0.0165
32 1 4.7968 6.4128 -2.4883
33 1 3.1579 7.0933 -2.3502
34 1 3.7912 8.1872 -0.2172
35 1 5.4303 7.5070 -0.3549
36 1 4.8593 8.9377 -2.7218
37 1 6.6183 13.0310 -2.0041
38 1 1.1818 1.9872 -3.0039
39 1 3.2209 -0.2367 -2.1485
40 1 2.1730 -0.2517 -3.6663
41 1 3.2683 1.9007 -4.4438
42 1 4.3160 1.9165 -2.9263
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001147230787.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:19:51
Heat of formation + Delta-G solvation = 79.464798 kcal
Electronic energy + Delta-G solvation = -22785.599735 eV
Core-core repulsion = 19382.756467 eV
Total energy + Delta-G solvation = -3402.843268 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-41.79971 -39.01905 -37.35756 -35.72453 -34.80910 -33.80253 -31.44707 -30.55809
-30.08414 -27.98999 -24.92027 -23.66892 -23.17501 -22.76531 -22.03725 -21.43955
-20.28421 -19.53056 -17.92416 -17.43567 -16.42092 -15.94228 -15.62082 -15.29075
-15.03053 -14.88258 -14.75278 -14.35418 -13.80714 -13.69418 -13.61841 -13.47869
-12.86681 -12.61265 -12.56280 -12.28888 -12.01159 -11.68027 -11.51520 -11.47744
-11.42088 -10.88681 -10.84914 -10.81410 -10.51343 -10.13696 -9.72754 -9.66385
-9.59168 -9.00808 -8.90181 -8.64513 -7.27344 -5.77696 -3.14707 1.31692
1.99843 2.03058 3.33900 3.40267 3.43370 3.44359 3.48527 3.53107
4.00579 4.11004 4.46796 4.49261 4.59826 4.61619 4.63563 4.70247
4.88841 5.02922 5.08231 5.15597 5.22417 5.33129 5.42301 5.48551
5.57512 5.58435 5.61794 5.72029 5.72800 5.75654 5.87731 6.03765
6.19887 6.48998 6.56663 6.64963 6.73355 7.31983 7.73056 7.96478
8.40419 8.45413 9.18624 9.90907 10.09567 11.40243
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.029736 B = 0.002868 C = 0.002672
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 941.394319 B = 9759.452645 C =10477.381705
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.119 3.881
3 N -0.355 5.355
4 N -0.297 5.297
5 C 0.081 3.919
6 C -0.285 4.285
7 C 0.591 3.409
8 O -0.542 6.542
9 N -0.721 5.721
10 C 0.112 3.888
11 C 0.148 3.852
12 N -0.753 5.753
13 C -0.247 4.247
14 H 0.091 0.909
15 C 0.006 3.994
16 N -0.933 5.933
17 Si 0.885 3.115
18 H -0.283 1.283
19 H -0.290 1.290
20 H -0.275 1.275
21 C 0.183 3.817
22 C -0.096 4.096
23 C -0.189 4.189
24 C -0.124 4.124
25 H 0.066 0.934
26 H 0.063 0.937
27 H 0.078 0.922
28 H 0.101 0.899
29 H 0.097 0.903
30 H 0.191 0.809
31 H 0.398 0.602
32 H 0.067 0.933
33 H 0.067 0.933
34 H 0.033 0.967
35 H 0.033 0.967
36 H 0.363 0.637
37 H 0.260 0.740
38 H 0.129 0.871
39 H 0.093 0.907
40 H 0.104 0.896
41 H 0.105 0.895
42 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.144 -29.561 1.364 31.621
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C -0.002 4.002
3 N -0.134 5.134
4 N -0.116 5.116
5 C -0.106 4.106
6 C -0.300 4.300
7 C 0.378 3.622
8 O -0.420 6.420
9 N -0.372 5.372
10 C -0.012 4.012
11 C 0.020 3.980
12 N -0.399 5.399
13 C -0.377 4.377
14 H 0.109 0.891
15 C -0.190 4.190
16 N -0.580 5.580
17 Si 0.715 3.285
18 H -0.209 1.209
19 H -0.216 1.216
20 H -0.201 1.201
21 C 0.051 3.949
22 C -0.116 4.116
23 C -0.226 4.226
24 C -0.162 4.162
25 H 0.085 0.915
26 H 0.082 0.918
27 H 0.097 0.903
28 H 0.119 0.881
29 H 0.115 0.885
30 H 0.208 0.792
31 H 0.232 0.768
32 H 0.086 0.914
33 H 0.086 0.914
34 H 0.051 0.949
35 H 0.050 0.950
36 H 0.196 0.804
37 H 0.070 0.930
38 H 0.147 0.853
39 H 0.111 0.889
40 H 0.122 0.878
41 H 0.124 0.876
42 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -11.460 -30.332 1.705 32.469
hybrid contribution 0.101 0.749 -1.313 1.515
sum -11.359 -29.583 0.393 31.691
Atomic orbital electron populations
1.22170 0.93879 1.03264 1.03457 1.21923 0.95713 0.77603 1.04948
1.48541 1.49659 1.12130 1.03102 1.77186 1.22542 1.04476 1.07354
1.24069 0.97044 0.95628 0.93873 1.20028 1.20140 0.96421 0.93426
1.17148 0.76877 0.81248 0.86956 1.90760 1.55426 1.81704 1.14147
1.45648 1.65052 1.15730 1.10796 1.21542 1.00019 0.85795 0.93848
1.20738 0.97228 0.86858 0.93171 1.42533 1.77906 1.14836 1.04627
1.19015 1.34046 0.90552 0.94056 0.89095 1.24675 1.00739 0.96033
0.97580 1.69700 1.48387 1.05525 1.34408 0.86538 0.77667 0.77368
0.86948 1.20944 1.21650 1.20127 1.20513 0.94752 0.90536 0.89103
1.20419 1.00973 1.01236 0.88963 1.23230 1.04669 0.90786 1.03923
1.22818 0.95661 0.97611 1.00124 0.91509 0.91775 0.90280 0.88143
0.88473 0.79193 0.76789 0.91437 0.91434 0.94898 0.94953 0.80400
0.92976 0.85312 0.88871 0.87788 0.87638 0.88592
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -0.90 10.24 37.16 0.38 -0.52 16
2 C 0.12 0.74 6.92 -4.04 -0.03 0.71 16
3 N -0.36 -3.53 3.58 -56.61 -0.20 -3.74 16
4 N -0.30 -3.42 12.50 30.86 0.39 -3.03 16
5 C 0.08 0.89 11.50 -16.98 -0.20 0.69 16
6 C -0.29 -3.56 6.12 -105.06 -0.64 -4.20 16
7 C 0.59 8.61 7.81 -12.52 -0.10 8.51 16
8 O -0.54 -9.31 14.69 5.27 0.08 -9.23 16
9 N -0.72 -9.81 5.55 -61.38 -0.34 -10.15 16
10 C 0.11 1.83 5.79 -4.04 -0.02 1.80 16
11 C 0.15 2.78 6.37 -4.04 -0.03 2.75 16
12 N -0.75 -18.03 5.41 -59.92 -0.32 -18.35 16
13 C -0.25 -7.03 10.47 -15.06 -0.16 -7.18 16
14 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16
15 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16
16 N -0.93 -29.39 13.97 55.49 0.78 -28.61 16
17 Si 0.88 22.31 27.74 -169.99 -4.71 17.59 16
18 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16
19 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16
20 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16
21 C 0.18 2.04 6.44 -81.60 -0.53 1.51 16
22 C -0.10 -0.91 5.01 -91.77 -0.46 -1.37 16
23 C -0.19 -1.26 8.81 -26.69 -0.24 -1.50 16
24 C -0.12 -1.19 8.96 -26.69 -0.24 -1.43 16
25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
27 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16
28 H 0.10 0.45 5.10 -51.93 -0.27 0.19 16
29 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16
30 H 0.19 1.48 7.53 -52.49 -0.40 1.08 16
31 H 0.40 4.34 7.45 -40.82 -0.30 4.04 16
32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16
33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16
34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16
35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16
36 H 0.36 8.55 5.53 -40.82 -0.23 8.32 16
37 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16
38 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16
39 H 0.09 0.57 6.89 -51.93 -0.36 0.21 16
40 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16
41 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16
42 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16
LS Contribution 350.68 15.07 5.28 5.28
Total: -1.00 -35.22 350.68 -7.62 -42.84
By element:
Atomic # 1 Polarization: 13.75 SS G_CDS: -6.21 Total: 7.54 kcal
Atomic # 6 Polarization: 2.20 SS G_CDS: -2.35 Total: -0.15 kcal
Atomic # 7 Polarization: -64.18 SS G_CDS: 0.29 Total: -63.88 kcal
Atomic # 8 Polarization: -9.31 SS G_CDS: 0.08 Total: -9.23 kcal
Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.59 kcal
Total LS contribution 5.28 Total: 5.28 kcal
Total: -35.22 -7.62 -42.84 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001147230787.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 122.306 kcal
(2) G-P(sol) polarization free energy of solvation -35.223 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.082 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.841 kcal
(6) G-S(sol) free energy of system = (1) + (5) 79.465 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds