Wall clock time and date at job start Tue Mar 31 2020 03:19:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46500 * 109.46810 * 2 1
4 4 N 1.39930 * 125.75723 * 89.97501 * 3 2 1
5 5 C 1.30446 * 108.89966 * 180.02562 * 4 3 2
6 6 C 1.41294 * 108.02233 * 0.02562 * 5 4 3
7 7 C 1.47432 * 126.41588 * 179.97438 * 6 5 4
8 8 O 1.21604 * 120.00029 * 185.40847 * 7 6 5
9 9 N 1.34773 * 119.99883 * 5.41742 * 7 6 5
10 10 C 1.46505 * 119.99993 * 180.02562 * 9 7 6
11 11 C 1.52999 * 109.47055 * 179.97438 * 10 9 7
12 12 N 1.46497 * 109.47142 * 179.97438 * 11 10 9
13 13 C 1.36930 * 120.00287 * 179.97438 * 12 11 10
14 14 H 1.07996 * 120.00022 * 359.97438 * 13 12 11
15 15 C 1.38815 * 120.00190 * 180.02562 * 13 12 11
16 16 N 1.31616 * 120.00089 * 180.02562 * 15 13 12
17 17 Si 1.86799 * 119.99871 * 0.02562 * 15 13 12
18 18 H 1.48496 * 109.47241 * 90.00038 * 17 15 13
19 19 H 1.48504 * 109.47173 * 210.00011 * 17 15 13
20 20 H 1.48501 * 109.47189 * 330.00199 * 17 15 13
21 21 C 1.34265 * 125.74855 * 270.30458 * 3 2 1
22 22 C 1.50701 * 126.29724 * 359.96519 * 21 3 2
23 23 C 1.52998 * 117.49311 * 311.58475 * 22 21 3
24 24 C 1.52997 * 117.49649 * 242.92400 * 22 21 3
25 25 H 1.08999 * 109.47278 * 300.00238 * 1 2 3
26 26 H 1.08994 * 109.47277 * 60.00343 * 1 2 3
27 27 H 1.09004 * 109.47284 * 179.97438 * 1 2 3
28 28 H 1.08999 * 109.47278 * 239.99762 * 2 1 3
29 29 H 1.08994 * 109.47277 * 119.99657 * 2 1 3
30 30 H 1.07995 * 125.99145 * 180.02562 * 5 4 3
31 31 H 0.97002 * 120.00016 * 359.97438 * 9 7 6
32 32 H 1.08997 * 109.46458 * 299.99109 * 10 9 7
33 33 H 1.08996 * 109.47200 * 59.99265 * 10 9 7
34 34 H 1.09000 * 109.46926 * 299.99650 * 11 10 9
35 35 H 1.08996 * 109.47321 * 59.99824 * 11 10 9
36 36 H 0.97004 * 119.99780 * 0.02562 * 12 11 10
37 37 H 0.97000 * 120.00102 * 179.97438 * 16 15 13
38 38 H 1.08997 * 115.55067 * 97.24840 * 22 21 3
39 39 H 1.08995 * 117.50231 * 359.97438 * 23 22 21
40 40 H 1.09001 * 117.49590 * 145.02383 * 23 22 21
41 41 H 1.09005 * 117.50009 * 214.97239 * 24 22 21
42 42 H 1.08995 * 117.50329 * 359.97325 * 24 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0182 1.3812 0.0000
4 7 2.2903 2.1523 1.1355
5 6 2.7060 3.3295 0.7572
6 6 2.7152 3.3567 -0.6554
7 6 3.1155 4.4922 -1.5063
8 8 2.9855 4.4229 -2.7134
9 7 3.6257 5.6069 -0.9464
10 6 4.0230 6.7355 -1.7919
11 6 4.5653 7.8647 -0.9135
12 7 4.9632 8.9929 -1.7589
13 6 5.4806 10.1259 -1.1900
14 1 5.5951 10.1878 -0.1179
15 6 5.8571 11.1952 -1.9911
16 7 6.3549 12.2839 -1.4443
17 14 5.6571 11.0889 -3.8453
18 1 4.3149 11.5958 -4.2283
19 1 6.7033 11.9115 -4.5041
20 1 5.7940 9.6748 -4.2777
21 6 2.2742 2.1227 -1.0897
22 6 2.1129 1.6870 -2.5233
23 6 2.7106 0.3364 -2.9225
24 6 3.3715 1.6351 -3.3917
25 1 -0.3634 0.5139 0.8899
26 1 -0.3633 0.5137 -0.8900
27 1 -0.3634 -1.0277 -0.0005
28 1 1.8933 -0.5139 -0.8899
29 1 1.8933 -0.5137 0.8900
30 1 2.9928 4.1411 1.4094
31 1 3.7292 5.6622 0.0165
32 1 4.7968 6.4128 -2.4883
33 1 3.1579 7.0933 -2.3502
34 1 3.7912 8.1872 -0.2172
35 1 5.4303 7.5070 -0.3549
36 1 4.8593 8.9377 -2.7218
37 1 6.6183 13.0310 -2.0041
38 1 1.1818 1.9872 -3.0039
39 1 3.2209 -0.2367 -2.1485
40 1 2.1730 -0.2517 -3.6663
41 1 3.2683 1.9007 -4.4438
42 1 4.3160 1.9165 -2.9263
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001147230787.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:19:50
Heat of formation + Delta-G solvation = 54.372121 kcal
Electronic energy + Delta-G solvation = -22786.687835 eV
Core-core repulsion = 19382.756467 eV
Total energy + Delta-G solvation = -3403.931368 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-42.61168 -40.17358 -38.04982 -37.34731 -35.48722 -35.33695 -33.42989 -31.39381
-30.99377 -29.44466 -25.98695 -24.82492 -24.19852 -23.44267 -23.12382 -22.91342
-21.18083 -20.45323 -19.76913 -18.57080 -17.23150 -16.94758 -16.77178 -16.47872
-16.29457 -15.78004 -15.64023 -15.54766 -15.36195 -14.94734 -14.82484 -14.45966
-14.40217 -13.49281 -13.40666 -13.14699 -13.08250 -12.97853 -12.67410 -12.57168
-12.54859 -12.35683 -12.10181 -12.06059 -11.81118 -11.48520 -11.21299 -11.01668
-10.85007 -10.42710 -10.12206 -9.60253 -9.34423 -8.03697 -5.38842 0.45814
1.14132 1.31035 1.40596 1.42590 1.49897 2.24123 2.47042 2.48482
2.74238 3.28048 3.32993 3.44156 3.78715 3.85118 3.90046 3.95471
4.03977 4.06780 4.12666 4.23799 4.25752 4.32353 4.42424 4.58799
4.68490 4.75489 4.79466 4.85627 4.97865 5.07147 5.07622 5.13990
5.17533 5.19245 5.37900 5.48007 5.74310 5.85803 6.19369 6.48813
6.67918 7.05027 7.34563 7.79643 7.97758 9.17173
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.029736 B = 0.002868 C = 0.002672
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 941.394319 B = 9759.452645 C =10477.381705
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.108 3.892
3 N -0.350 5.350
4 N -0.317 5.317
5 C 0.083 3.917
6 C -0.312 4.312
7 C 0.591 3.409
8 O -0.573 6.573
9 N -0.713 5.713
10 C 0.129 3.871
11 C 0.150 3.850
12 N -0.758 5.758
13 C -0.237 4.237
14 H 0.063 0.937
15 C -0.062 4.062
16 N -0.981 5.981
17 Si 0.953 3.047
18 H -0.277 1.277
19 H -0.294 1.294
20 H -0.253 1.253
21 C 0.185 3.815
22 C -0.110 4.110
23 C -0.153 4.153
24 C -0.144 4.144
25 H 0.049 0.951
26 H 0.057 0.943
27 H 0.106 0.894
28 H 0.121 0.879
29 H 0.107 0.893
30 H 0.215 0.785
31 H 0.412 0.588
32 H 0.060 0.940
33 H 0.061 0.939
34 H 0.041 0.959
35 H 0.040 0.960
36 H 0.367 0.633
37 H 0.259 0.741
38 H 0.129 0.871
39 H 0.104 0.896
40 H 0.130 0.870
41 H 0.103 0.897
42 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.176 -32.435 0.688 34.652
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C -0.010 4.010
3 N -0.128 5.128
4 N -0.136 5.136
5 C -0.104 4.104
6 C -0.327 4.327
7 C 0.379 3.621
8 O -0.453 6.453
9 N -0.365 5.365
10 C 0.004 3.996
11 C 0.023 3.977
12 N -0.405 5.405
13 C -0.367 4.367
14 H 0.081 0.919
15 C -0.253 4.253
16 N -0.631 5.631
17 Si 0.780 3.220
18 H -0.204 1.204
19 H -0.221 1.221
20 H -0.177 1.177
21 C 0.050 3.950
22 C -0.130 4.130
23 C -0.190 4.190
24 C -0.181 4.181
25 H 0.068 0.932
26 H 0.076 0.924
27 H 0.125 0.875
28 H 0.139 0.861
29 H 0.126 0.874
30 H 0.231 0.769
31 H 0.248 0.752
32 H 0.078 0.922
33 H 0.079 0.921
34 H 0.059 0.941
35 H 0.058 0.942
36 H 0.200 0.800
37 H 0.068 0.932
38 H 0.147 0.853
39 H 0.122 0.878
40 H 0.148 0.852
41 H 0.121 0.879
42 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -12.518 -33.279 1.077 35.571
hybrid contribution 0.390 1.542 -0.988 1.872
sum -12.128 -31.737 0.089 33.975
Atomic orbital electron populations
1.22142 0.93100 1.04691 1.02271 1.22320 0.96347 0.75898 1.06483
1.48866 1.48650 1.13013 1.02317 1.77147 1.23192 1.04907 1.08361
1.24445 0.96285 0.96116 0.93519 1.19974 1.22287 0.96480 0.93992
1.17437 0.76218 0.81606 0.86806 1.90738 1.56785 1.82284 1.15513
1.45471 1.64845 1.14868 1.11311 1.21167 0.99351 0.85693 0.93386
1.20831 0.97641 0.86139 0.93070 1.42547 1.77707 1.14907 1.05319
1.19011 1.32827 0.91912 0.92997 0.91916 1.25501 1.01279 0.95791
1.02767 1.69871 1.50393 1.06561 1.36282 0.85433 0.77462 0.78418
0.80657 1.20351 1.22055 1.17729 1.20781 0.93696 0.90362 0.90112
1.20472 1.00775 1.03766 0.87972 1.23339 1.02442 0.89461 1.03710
1.22755 0.94919 1.00597 0.99874 0.93158 0.92427 0.87545 0.86099
0.87443 0.76881 0.75151 0.92172 0.92096 0.94094 0.94221 0.80004
0.93208 0.85323 0.87824 0.85164 0.87873 0.90627
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.37 10.24 71.98 0.74 -0.63 16
2 C 0.11 1.07 6.92 86.38 0.60 1.67 16
3 N -0.35 -6.38 3.58 -333.00 -1.19 -7.57 16
4 N -0.32 -6.88 12.50 -56.28 -0.70 -7.58 16
5 C 0.08 1.72 11.50 85.65 0.99 2.70 16
6 C -0.31 -7.55 6.12 -20.15 -0.12 -7.68 16
7 C 0.59 16.92 7.81 86.67 0.68 17.59 16
8 O -0.57 -19.64 14.69 -4.04 -0.06 -19.70 16
9 N -0.71 -18.66 5.55 -466.37 -2.59 -21.25 16
10 C 0.13 4.07 5.79 86.38 0.50 4.57 16
11 C 0.15 5.46 6.37 86.38 0.55 6.01 16
12 N -0.76 -35.60 5.41 -343.47 -1.86 -37.46 16
13 C -0.24 -13.53 10.47 84.04 0.88 -12.65 16
14 H 0.06 3.87 8.06 -2.91 -0.02 3.85 16
15 C -0.06 -3.65 5.50 84.86 0.47 -3.19 16
16 N -0.98 -63.01 13.97 21.65 0.30 -62.70 16
17 Si 0.95 45.94 27.74 68.60 1.90 47.84 16
18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16
19 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16
20 H -0.25 -11.11 6.52 99.48 0.65 -10.46 16
21 C 0.18 3.89 6.44 42.14 0.27 4.17 16
22 C -0.11 -1.93 5.01 -11.54 -0.06 -1.98 16
23 C -0.15 -1.62 8.81 30.62 0.27 -1.35 16
24 C -0.14 -2.63 8.96 30.62 0.27 -2.35 16
25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16
26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16
27 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16
28 H 0.12 0.67 5.10 -2.39 -0.01 0.66 16
29 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16
30 H 0.21 2.96 7.53 -2.91 -0.02 2.94 16
31 H 0.41 8.39 7.45 -92.71 -0.69 7.70 16
32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16
33 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16
34 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16
35 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16
36 H 0.37 16.63 5.53 -92.71 -0.51 16.12 16
37 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16
38 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16
39 H 0.10 0.91 6.89 -2.39 -0.02 0.89 16
40 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16
41 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16
42 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16
Total: -1.00 -76.74 350.68 1.62 -75.12
By element:
Atomic # 1 Polarization: 26.64 SS G_CDS: -0.22 Total: 26.42 kcal
Atomic # 6 Polarization: 0.84 SS G_CDS: 6.03 Total: 6.87 kcal
Atomic # 7 Polarization: -130.53 SS G_CDS: -6.04 Total: -136.57 kcal
Atomic # 8 Polarization: -19.64 SS G_CDS: -0.06 Total: -19.70 kcal
Atomic # 14 Polarization: 45.94 SS G_CDS: 1.90 Total: 47.84 kcal
Total: -76.74 1.62 -75.12 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001147230787.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 129.494 kcal
(2) G-P(sol) polarization free energy of solvation -76.739 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.756 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.122 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.372 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds