Wall clock time and date at job start Tue Mar 31 2020 03:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.46997 * 2 1 4 4 C 1.52996 * 109.47531 * 120.00149 * 2 1 3 5 5 C 1.52993 * 109.47473 * 185.00139 * 4 2 1 6 6 N 1.46496 * 109.47551 * 180.02562 * 5 4 2 7 7 C 1.34777 * 120.00258 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00166 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99762 * 179.97438 * 7 6 5 10 10 C 1.53002 * 109.46925 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.47300 * 180.02562 * 10 9 7 12 12 N 1.31788 * 119.12344 * 269.72579 * 11 10 9 13 13 C 1.32338 * 120.82104 * 179.75772 * 12 11 10 14 14 C 1.38595 * 119.10180 * 0.50503 * 13 12 11 15 15 C 1.38604 * 118.40132 * 359.75621 * 14 13 12 16 16 N 1.31797 * 119.12416 * 89.99784 * 11 10 9 17 17 N 1.46499 * 109.46850 * 240.00423 * 2 1 3 18 18 C 1.36934 * 120.00012 * 85.00186 * 17 2 1 19 19 H 1.08000 * 120.00335 * 359.97438 * 18 17 2 20 20 C 1.38815 * 119.99774 * 179.97438 * 18 17 2 21 21 N 1.31611 * 120.00070 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99708 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46968 * 89.99983 * 22 20 18 24 24 H 1.48503 * 109.46754 * 209.99490 * 22 20 18 25 25 H 1.48493 * 109.47375 * 330.00116 * 22 20 18 26 26 H 1.08992 * 109.47256 * 59.99739 * 1 2 3 27 27 H 1.08996 * 109.46762 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46980 * 299.99833 * 1 2 3 29 29 H 1.09000 * 109.46870 * 64.99921 * 4 2 1 30 30 H 1.09004 * 109.47108 * 305.00027 * 4 2 1 31 31 H 1.09000 * 109.47250 * 60.00015 * 5 4 2 32 32 H 1.09004 * 109.46862 * 300.00038 * 5 4 2 33 33 H 0.96999 * 119.99694 * 359.97438 * 6 5 4 34 34 H 1.09000 * 109.47318 * 299.99141 * 9 7 6 35 35 H 1.09000 * 109.47161 * 59.99772 * 9 7 6 36 36 H 1.09004 * 109.46930 * 299.99901 * 10 9 7 37 37 H 1.09004 * 109.47059 * 59.99503 * 10 9 7 38 38 H 1.07995 * 120.44914 * 180.23760 * 13 12 11 39 39 H 1.08001 * 120.80352 * 179.76979 * 14 13 12 40 40 H 1.07993 * 120.45091 * 180.02562 * 15 14 13 41 41 H 0.96993 * 119.99730 * 264.99532 * 17 2 1 42 42 H 0.97007 * 119.99961 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 7 4.0534 -1.3044 2.5094 7 6 5.3742 -1.3398 2.7750 8 8 6.1585 -0.7998 2.0238 9 6 5.8766 -2.0503 4.0054 10 6 7.4014 -1.9424 4.0698 11 6 7.9039 -2.6534 5.2998 12 7 8.0284 -1.9784 6.4249 13 6 8.4619 -2.5704 7.5263 14 6 8.7962 -3.9147 7.4821 15 6 8.6569 -4.5895 6.2795 16 7 8.2123 -3.9323 5.2205 17 7 2.0183 -0.6905 -1.1962 18 6 2.1491 -0.0073 -2.3757 19 1 1.8919 1.0405 -2.4243 20 6 2.6122 -0.6615 -3.5091 21 7 2.9261 -1.9383 -3.4498 22 14 2.7900 0.2703 -5.1183 23 1 4.1518 0.8563 -5.2031 24 1 2.5803 -0.6614 -6.2555 25 1 1.7792 1.3567 -5.1755 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.7518 -1.7715 1.2055 30 1 1.6055 -0.2618 2.1370 31 1 3.8532 0.4370 1.3573 32 1 3.9995 -1.0727 0.4258 33 1 3.4261 -1.7359 3.1103 34 1 5.4418 -1.5910 4.8932 35 1 5.5885 -3.1006 3.9615 36 1 7.8360 -2.4019 3.1820 37 1 7.6898 -0.8921 4.1134 38 1 8.5580 -2.0125 8.4459 39 1 9.1563 -4.4243 8.3636 40 1 8.9074 -5.6375 6.2078 41 1 2.2490 -1.6316 -1.1527 42 1 3.2502 -2.3954 -4.2417 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274804002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:49 Heat of formation + Delta-G solvation = 7.440350 kcal Electronic energy + Delta-G solvation = -22015.809084 eV Core-core repulsion = 18609.842601 eV Total energy + Delta-G solvation = -3405.966483 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.37015 -39.49879 -36.59748 -34.55727 -34.21646 -34.04532 -32.23834 -31.20891 -29.25498 -28.11048 -25.89329 -24.89648 -23.81176 -22.86454 -21.93137 -20.44332 -19.55455 -17.89097 -17.57289 -17.18381 -16.67823 -15.76547 -15.66880 -15.53566 -15.04911 -14.90983 -14.21184 -13.92743 -13.86630 -13.48446 -13.44836 -12.99983 -12.64823 -12.45618 -12.28051 -12.00043 -11.51122 -11.32042 -11.18957 -11.15805 -11.01492 -10.87970 -10.69926 -10.60239 -10.25125 -10.00186 -9.92490 -9.61153 -9.57028 -9.54505 -8.88090 -8.74720 -6.91058 -5.71027 -2.99582 0.50752 0.72935 2.82944 3.20818 3.44602 3.48613 3.53566 3.54847 3.71948 3.82181 4.21710 4.59049 4.64652 4.70848 4.72376 4.92479 4.95776 5.18416 5.33975 5.35217 5.41911 5.43906 5.60524 5.73213 5.79906 5.85566 5.92083 6.09621 6.11093 6.21431 6.38784 6.43436 6.53021 6.64701 6.72699 6.76046 6.90022 7.09430 7.69513 7.75910 7.76797 8.42485 8.47375 9.58721 10.15558 10.50139 11.51672 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023922 B = 0.002450 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.173147 B =11427.715027 C =12095.391185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.121 3.879 6 N -0.729 5.729 7 C 0.511 3.489 8 O -0.536 6.536 9 C -0.130 4.130 10 C -0.039 4.039 11 C 0.325 3.675 12 N -0.516 5.516 13 C 0.148 3.852 14 C -0.238 4.238 15 C 0.150 3.850 16 N -0.514 5.514 17 N -0.723 5.723 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.283 1.283 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.035 0.965 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.396 0.604 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.168 0.832 39 H 0.147 0.853 40 H 0.169 0.831 41 H 0.383 0.617 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.290 -4.445 25.737 27.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.067 0.933 4 C -0.171 4.171 5 C -0.001 4.001 6 N -0.380 5.380 7 C 0.297 3.703 8 O -0.412 6.412 9 C -0.171 4.171 10 C -0.078 4.078 11 C 0.058 3.942 12 N -0.230 5.230 13 C -0.018 4.018 14 C -0.260 4.260 15 C -0.017 4.017 16 N -0.228 5.228 17 N -0.365 5.365 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.217 1.217 24 H -0.219 1.219 25 H -0.208 1.208 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.229 0.771 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.185 0.815 39 H 0.165 0.835 40 H 0.186 0.814 41 H 0.217 0.783 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.547 -3.447 24.210 25.592 hybrid contribution 0.155 -0.676 0.307 0.759 sum 7.703 -4.124 24.517 26.027 Atomic orbital electron populations 1.22425 0.99179 1.00799 0.99934 1.20157 0.91850 0.95594 0.86065 0.93301 1.22054 0.93994 1.01749 0.99277 1.21457 0.94341 0.97168 0.87182 1.46111 1.07194 1.57113 1.27609 1.20394 0.82546 0.80542 0.86867 1.90748 1.55189 1.45663 1.49645 1.21532 0.95712 1.02390 0.97488 1.20160 0.94197 1.01283 0.92155 1.23306 0.90495 0.86971 0.93447 1.68323 1.14674 1.40262 0.99698 1.23283 0.89661 0.92150 0.96671 1.22926 1.04641 0.97420 1.00982 1.23305 0.90070 1.00493 0.87790 1.68338 1.12427 1.09858 1.32158 1.42448 1.78085 1.10644 1.05354 1.19219 1.36451 0.93831 0.87337 0.91221 1.24727 1.02205 0.95960 0.98055 1.69654 1.50908 1.08673 1.28874 0.86218 0.77818 0.78571 0.83763 1.21706 1.21876 1.20845 0.92735 0.93549 0.94604 0.91641 0.91984 0.91844 0.89710 0.77095 0.88793 0.88651 0.88061 0.88186 0.81480 0.83520 0.81428 0.78294 0.93570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.49 37.16 0.35 -2.52 16 2 C 0.17 3.35 2.89 -67.93 -0.20 3.16 16 3 H 0.05 0.97 8.08 -51.92 -0.42 0.55 16 4 C -0.13 -2.03 4.87 -26.74 -0.13 -2.16 16 5 C 0.12 2.03 5.56 -4.05 -0.02 2.01 16 6 N -0.73 -9.79 5.56 -60.30 -0.33 -10.12 16 7 C 0.51 7.46 7.83 -10.98 -0.09 7.37 16 8 O -0.54 -10.30 15.98 5.56 0.09 -10.21 16 9 C -0.13 -1.38 5.68 -27.88 -0.16 -1.54 16 10 C -0.04 -0.45 4.94 -27.88 -0.14 -0.59 16 11 C 0.32 3.62 6.90 -157.20 -1.08 2.54 16 12 N -0.52 -5.36 10.33 -10.73 -0.11 -5.47 16 13 C 0.15 1.06 11.31 -17.20 -0.19 0.86 16 14 C -0.24 -1.36 10.17 -39.31 -0.40 -1.76 16 15 C 0.15 1.10 11.31 -17.20 -0.19 0.91 16 16 N -0.51 -5.52 10.33 -10.73 -0.11 -5.63 16 17 N -0.72 -17.87 4.57 -53.42 -0.24 -18.12 16 18 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 22 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.03 0.52 8.14 -51.92 -0.42 0.09 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.08 1.78 7.75 -51.93 -0.40 1.38 16 33 H 0.40 3.94 8.47 -40.82 -0.35 3.59 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.10 1.29 8.10 -51.93 -0.42 0.86 16 37 H 0.10 1.21 8.10 -51.93 -0.42 0.79 16 38 H 0.17 0.64 8.06 -52.49 -0.42 0.21 16 39 H 0.15 0.35 8.06 -52.49 -0.42 -0.07 16 40 H 0.17 0.71 8.06 -52.49 -0.42 0.28 16 41 H 0.38 10.11 7.80 -40.82 -0.32 9.79 16 42 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 360.83 15.07 5.44 5.44 Total: -1.00 -35.22 360.83 -8.59 -43.81 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -6.52 Total: 9.26 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -2.50 Total: 1.05 kcal Atomic # 7 Polarization: -67.11 SS G_CDS: -0.08 Total: -67.19 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.22 -8.59 -43.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274804002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.255 kcal (2) G-P(sol) polarization free energy of solvation -35.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds