Wall clock time and date at job start Tue Mar 31 2020 03:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.46997 * 2 1 4 4 C 1.52996 * 109.47531 * 120.00149 * 2 1 3 5 5 C 1.52993 * 109.47473 * 185.00139 * 4 2 1 6 6 N 1.46496 * 109.47551 * 180.02562 * 5 4 2 7 7 C 1.34777 * 120.00258 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00166 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99762 * 179.97438 * 7 6 5 10 10 C 1.53002 * 109.46925 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.47300 * 180.02562 * 10 9 7 12 12 N 1.31788 * 119.12344 * 269.72579 * 11 10 9 13 13 C 1.32338 * 120.82104 * 179.75772 * 12 11 10 14 14 C 1.38595 * 119.10180 * 0.50503 * 13 12 11 15 15 C 1.38604 * 118.40132 * 359.75621 * 14 13 12 16 16 N 1.31797 * 119.12416 * 89.99784 * 11 10 9 17 17 N 1.46499 * 109.46850 * 240.00423 * 2 1 3 18 18 C 1.36934 * 120.00012 * 85.00186 * 17 2 1 19 19 H 1.08000 * 120.00335 * 359.97438 * 18 17 2 20 20 C 1.38815 * 119.99774 * 179.97438 * 18 17 2 21 21 N 1.31611 * 120.00070 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99708 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46968 * 89.99983 * 22 20 18 24 24 H 1.48503 * 109.46754 * 209.99490 * 22 20 18 25 25 H 1.48493 * 109.47375 * 330.00116 * 22 20 18 26 26 H 1.08992 * 109.47256 * 59.99739 * 1 2 3 27 27 H 1.08996 * 109.46762 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46980 * 299.99833 * 1 2 3 29 29 H 1.09000 * 109.46870 * 64.99921 * 4 2 1 30 30 H 1.09004 * 109.47108 * 305.00027 * 4 2 1 31 31 H 1.09000 * 109.47250 * 60.00015 * 5 4 2 32 32 H 1.09004 * 109.46862 * 300.00038 * 5 4 2 33 33 H 0.96999 * 119.99694 * 359.97438 * 6 5 4 34 34 H 1.09000 * 109.47318 * 299.99141 * 9 7 6 35 35 H 1.09000 * 109.47161 * 59.99772 * 9 7 6 36 36 H 1.09004 * 109.46930 * 299.99901 * 10 9 7 37 37 H 1.09004 * 109.47059 * 59.99503 * 10 9 7 38 38 H 1.07995 * 120.44914 * 180.23760 * 13 12 11 39 39 H 1.08001 * 120.80352 * 179.76979 * 14 13 12 40 40 H 1.07993 * 120.45091 * 180.02562 * 15 14 13 41 41 H 0.96993 * 119.99730 * 264.99532 * 17 2 1 42 42 H 0.97007 * 119.99961 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 7 4.0534 -1.3044 2.5094 7 6 5.3742 -1.3398 2.7750 8 8 6.1585 -0.7998 2.0238 9 6 5.8766 -2.0503 4.0054 10 6 7.4014 -1.9424 4.0698 11 6 7.9039 -2.6534 5.2998 12 7 8.0284 -1.9784 6.4249 13 6 8.4619 -2.5704 7.5263 14 6 8.7962 -3.9147 7.4821 15 6 8.6569 -4.5895 6.2795 16 7 8.2123 -3.9323 5.2205 17 7 2.0183 -0.6905 -1.1962 18 6 2.1491 -0.0073 -2.3757 19 1 1.8919 1.0405 -2.4243 20 6 2.6122 -0.6615 -3.5091 21 7 2.9261 -1.9383 -3.4498 22 14 2.7900 0.2703 -5.1183 23 1 4.1518 0.8563 -5.2031 24 1 2.5803 -0.6614 -6.2555 25 1 1.7792 1.3567 -5.1755 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.7518 -1.7715 1.2055 30 1 1.6055 -0.2618 2.1370 31 1 3.8532 0.4370 1.3573 32 1 3.9995 -1.0727 0.4258 33 1 3.4261 -1.7359 3.1103 34 1 5.4418 -1.5910 4.8932 35 1 5.5885 -3.1006 3.9615 36 1 7.8360 -2.4019 3.1820 37 1 7.6898 -0.8921 4.1134 38 1 8.5580 -2.0125 8.4459 39 1 9.1563 -4.4243 8.3636 40 1 8.9074 -5.6375 6.2078 41 1 2.2490 -1.6316 -1.1527 42 1 3.2502 -2.3954 -4.2417 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274804002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:48 Heat of formation + Delta-G solvation = -18.462404 kcal Electronic energy + Delta-G solvation = -22016.932311 eV Core-core repulsion = 18609.842601 eV Total energy + Delta-G solvation = -3407.089710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.99946 -40.72617 -38.16116 -35.86482 -35.24290 -34.67207 -34.12573 -32.04519 -30.94157 -29.59209 -26.82681 -25.77286 -25.45547 -24.04223 -22.93973 -21.77456 -20.97791 -19.27544 -18.53774 -18.38655 -17.48172 -17.05727 -16.88540 -16.60150 -16.09317 -15.82776 -15.79204 -15.33836 -14.98185 -14.89575 -14.41079 -14.15628 -13.93148 -13.88348 -13.52705 -13.22838 -13.16489 -12.82968 -12.61621 -12.28102 -12.22590 -12.18265 -12.08949 -11.84255 -11.78342 -11.63702 -11.58772 -10.98697 -10.89400 -10.42186 -10.20088 -10.06694 -8.96952 -7.92034 -5.18641 -0.08244 0.18041 1.45676 1.48211 1.55460 1.64560 2.16646 2.57571 2.79216 2.95444 3.26179 3.42163 3.72153 3.79276 3.93240 4.02285 4.05807 4.10610 4.20258 4.24818 4.28006 4.39647 4.51326 4.60777 4.68345 4.76109 4.79141 4.91079 5.00944 5.01872 5.04501 5.12529 5.25012 5.41253 5.47083 5.50178 5.54961 5.62929 6.08878 6.31142 6.59322 7.13661 7.29951 7.36942 8.15320 8.36400 9.31636 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023922 B = 0.002450 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.173147 B =11427.715027 C =12095.391185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.163 3.837 3 H 0.042 0.958 4 C -0.115 4.115 5 C 0.132 3.868 6 N -0.714 5.714 7 C 0.507 3.493 8 O -0.590 6.590 9 C -0.112 4.112 10 C -0.035 4.035 11 C 0.307 3.693 12 N -0.539 5.539 13 C 0.137 3.863 14 C -0.217 4.217 15 C 0.135 3.865 16 N -0.544 5.544 17 N -0.735 5.735 18 C -0.232 4.232 19 H 0.074 0.926 20 C -0.080 4.080 21 N -0.970 5.970 22 Si 0.967 3.033 23 H -0.293 1.293 24 H -0.296 1.296 25 H -0.268 1.268 26 H 0.032 0.968 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.050 0.950 32 H 0.034 0.966 33 H 0.417 0.583 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.200 0.800 39 H 0.187 0.813 40 H 0.197 0.803 41 H 0.371 0.629 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.542 -4.643 29.010 30.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 H 0.060 0.940 4 C -0.153 4.153 5 C 0.007 3.993 6 N -0.366 5.366 7 C 0.295 3.705 8 O -0.470 6.470 9 C -0.153 4.153 10 C -0.075 4.075 11 C 0.039 3.961 12 N -0.254 5.254 13 C -0.028 4.028 14 C -0.238 4.238 15 C -0.030 4.030 16 N -0.258 5.258 17 N -0.376 5.376 18 C -0.364 4.364 19 H 0.092 0.908 20 C -0.272 4.272 21 N -0.622 5.622 22 Si 0.796 3.204 23 H -0.220 1.220 24 H -0.223 1.223 25 H -0.193 1.193 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.124 0.876 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.255 0.745 34 H 0.137 0.863 35 H 0.130 0.870 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.217 0.783 39 H 0.205 0.795 40 H 0.214 0.786 41 H 0.203 0.797 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.744 -3.632 27.560 28.604 hybrid contribution 0.429 -0.612 -0.534 0.918 sum 7.173 -4.244 27.026 28.282 Atomic orbital electron populations 1.22257 0.97087 1.01044 1.00861 1.20476 0.93191 0.95203 0.85719 0.93992 1.21907 0.92477 1.02060 0.98890 1.21098 0.95364 0.96128 0.86669 1.45902 1.07448 1.56498 1.26737 1.21142 0.82302 0.79716 0.87379 1.90726 1.56561 1.48021 1.51681 1.21443 0.95080 1.02766 0.95968 1.19983 0.94817 1.00421 0.92246 1.22960 0.92268 0.87413 0.93456 1.68278 1.15743 1.40998 1.00375 1.23934 0.88909 0.93270 0.96716 1.23338 1.02162 0.96752 1.01570 1.23910 0.89568 1.01796 0.87715 1.68283 1.13595 1.09918 1.34040 1.42653 1.78374 1.10230 1.06326 1.19604 1.34278 0.94073 0.88451 0.90803 1.25503 1.03395 0.96893 1.01398 1.69808 1.52945 1.10188 1.29239 0.85228 0.77695 0.77563 0.79866 1.22015 1.22286 1.19269 0.94900 0.93623 0.90558 0.90990 0.87611 0.93125 0.94729 0.74548 0.86277 0.87048 0.90242 0.89574 0.78328 0.79526 0.78650 0.79668 0.94291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 9.49 71.98 0.68 -4.35 16 2 C 0.16 6.12 2.89 44.99 0.13 6.25 16 3 H 0.04 1.64 8.08 -2.38 -0.02 1.62 16 4 C -0.12 -3.31 4.87 30.59 0.15 -3.16 16 5 C 0.13 4.45 5.56 86.38 0.48 4.93 16 6 N -0.71 -18.61 5.56 -463.07 -2.57 -21.19 16 7 C 0.51 15.01 7.83 87.66 0.69 15.70 16 8 O -0.59 -23.95 15.98 -3.03 -0.05 -24.00 16 9 C -0.11 -2.32 5.68 29.85 0.17 -2.15 16 10 C -0.03 -0.85 4.94 29.85 0.15 -0.70 16 11 C 0.31 6.79 6.90 138.75 0.96 7.75 16 12 N -0.54 -10.65 10.33 -187.85 -1.94 -12.59 16 13 C 0.14 1.59 11.31 84.70 0.96 2.55 16 14 C -0.22 -1.75 10.17 22.44 0.23 -1.52 16 15 C 0.13 1.70 11.31 84.70 0.96 2.66 16 16 N -0.54 -11.36 10.33 -187.85 -1.94 -13.30 16 17 N -0.74 -36.92 4.57 -322.93 -1.48 -38.39 16 18 C -0.23 -13.11 9.93 84.03 0.83 -12.27 16 19 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 20 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 21 N -0.97 -61.31 13.06 21.65 0.28 -61.03 16 22 Si 0.97 47.95 29.55 68.60 2.03 49.98 16 23 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 24 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 25 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 26 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.03 1.53 7.75 -2.38 -0.02 1.51 16 33 H 0.42 7.27 8.47 -92.71 -0.79 6.48 16 34 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.08 2.21 8.10 -2.38 -0.02 2.19 16 37 H 0.09 2.26 8.10 -2.39 -0.02 2.24 16 38 H 0.20 0.83 8.06 -2.91 -0.02 0.81 16 39 H 0.19 -0.05 8.06 -2.91 -0.02 -0.07 16 40 H 0.20 1.11 8.06 -2.91 -0.02 1.09 16 41 H 0.37 20.19 7.80 -92.71 -0.72 19.47 16 42 H 0.25 15.31 8.31 -92.70 -0.77 14.54 16 Total: -1.00 -81.15 360.83 0.69 -80.45 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: -0.48 Total: 28.67 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 6.85 Total: 11.40 kcal Atomic # 7 Polarization: -138.86 SS G_CDS: -7.65 Total: -146.51 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.05 Total: -24.00 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -81.15 0.69 -80.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274804002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.990 kcal (2) G-P(sol) polarization free energy of solvation -81.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds