Wall clock time and date at job start Tue Mar 31 2020 03:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36939 * 119.99800 * 2 1 4 4 H 1.07998 * 120.00021 * 203.77634 * 3 2 1 5 5 C 1.38810 * 119.99957 * 23.78605 * 3 2 1 6 6 N 1.31620 * 120.00130 * 11.36091 * 5 3 2 7 7 Si 1.86798 * 119.99956 * 191.36253 * 5 3 2 8 8 H 1.48494 * 109.47196 * 89.99956 * 7 5 3 9 9 H 1.48502 * 109.47123 * 209.99910 * 7 5 3 10 10 H 1.48502 * 109.47279 * 329.99792 * 7 5 3 11 11 C 1.46501 * 119.99814 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.46839 * 269.99738 * 11 2 1 13 13 N 1.46504 * 109.47004 * 180.02562 * 12 11 2 14 14 C 1.34777 * 119.99800 * 180.02562 * 13 12 11 15 15 O 1.21624 * 120.00521 * 4.96333 * 14 13 12 16 16 C 1.47168 * 119.99796 * 184.96766 * 14 13 12 17 17 C 1.38410 * 126.88668 * 93.06989 * 16 14 13 18 18 C 1.50697 * 127.31901 * 359.97438 * 17 16 14 19 19 C 1.52996 * 117.49836 * 171.37636 * 18 17 16 20 20 C 1.53001 * 117.50085 * 240.00037 * 18 17 16 21 21 C 1.39666 * 105.35725 * 180.24200 * 17 16 14 22 22 N 1.30864 * 107.86707 * 359.60195 * 21 17 16 23 23 N 1.28441 * 110.92383 * 0.41897 * 22 21 17 24 24 C 1.46507 * 125.19308 * 179.75644 * 23 22 21 25 25 H 1.08997 * 109.46951 * 275.10724 * 1 2 3 26 26 H 1.09008 * 109.47175 * 35.10715 * 1 2 3 27 27 H 1.09005 * 109.47140 * 155.10732 * 1 2 3 28 28 H 0.96998 * 120.00090 * 179.97438 * 6 5 3 29 29 H 1.09001 * 109.46626 * 150.00174 * 11 2 1 30 30 H 1.09001 * 109.47428 * 30.00053 * 11 2 1 31 31 H 1.08996 * 109.47527 * 60.00545 * 12 11 2 32 32 H 1.09001 * 109.47368 * 300.00352 * 12 11 2 33 33 H 0.96999 * 119.99948 * 0.02562 * 13 12 11 34 34 H 1.09007 * 115.56024 * 25.68712 * 18 17 16 35 35 H 1.08998 * 117.49803 * 214.97714 * 19 18 17 36 36 H 1.08995 * 117.49851 * 359.97438 * 19 18 17 37 37 H 1.08999 * 117.49569 * 359.97438 * 20 18 17 38 38 H 1.09000 * 117.49919 * 145.01851 * 20 18 17 39 39 H 1.08000 * 126.06633 * 179.74167 * 21 17 16 40 40 H 1.08996 * 109.46940 * 274.70271 * 24 23 22 41 41 H 1.09001 * 109.46522 * 34.70098 * 24 23 22 42 42 H 1.08996 * 109.47084 * 154.69872 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1609 1.2257 -0.3771 5 6 1.5440 2.3370 0.4848 6 7 0.4086 2.2549 1.1455 7 14 2.3403 4.0025 0.1996 8 1 1.8432 4.5768 -1.0764 9 1 1.9961 4.9142 1.3201 10 1 3.8147 3.8405 0.1283 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4417 13 7 3.1855 -2.9794 1.4412 14 6 3.5221 -3.5637 2.6081 15 8 3.1401 -3.0865 3.6596 16 6 4.3519 -4.7791 2.6101 17 6 5.7302 -4.8439 2.7192 18 6 6.6907 -3.6912 2.8595 19 6 8.1525 -4.0231 3.1655 20 6 7.7564 -3.5236 1.7746 21 6 6.0419 -6.2042 2.6652 22 7 4.9211 -6.8685 2.5434 23 7 3.9162 -6.0695 2.5046 24 6 2.5162 -6.4794 2.3684 25 1 -0.3633 0.0915 1.0236 26 1 -0.3634 0.8408 -0.5911 27 1 -0.3634 -0.9322 -0.4326 28 1 -0.0144 3.0592 1.4847 29 1 3.1499 -1.1381 -0.5143 30 1 1.6084 -2.0282 -0.5147 31 1 1.5001 -1.8416 1.9555 32 1 3.0415 -0.9515 1.9559 33 1 3.4286 -3.3988 0.6009 34 1 6.2768 -2.7854 3.3027 35 1 8.7004 -3.3356 3.8099 36 1 8.4194 -5.0751 3.2658 37 1 7.7631 -4.2473 0.9596 38 1 8.0437 -2.5075 1.5041 39 1 7.0322 -6.6321 2.7174 40 1 2.2760 -6.6069 1.3129 41 1 2.3612 -7.4223 2.8928 42 1 1.8701 -5.7141 2.7983 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690946674.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:20 Heat of formation + Delta-G solvation = 94.036522 kcal Electronic energy + Delta-G solvation = -23218.395834 eV Core-core repulsion = 19816.184443 eV Total energy + Delta-G solvation = -3402.211391 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.63551 -39.17835 -37.34470 -36.10160 -34.22191 -33.28278 -31.55349 -30.81441 -28.16485 -27.22684 -25.91312 -24.25103 -23.41707 -22.49505 -22.06347 -20.73015 -20.23138 -19.65952 -17.94161 -16.78962 -16.47628 -15.92840 -15.67135 -15.50507 -14.85612 -14.74576 -14.39902 -14.23403 -13.70462 -13.29882 -13.23964 -13.10181 -12.91822 -12.43642 -12.35386 -12.08055 -11.63019 -11.28096 -11.10376 -10.94428 -10.89542 -10.80362 -10.63451 -10.42092 -10.36643 -10.08573 -10.02976 -9.86684 -9.26255 -8.79907 -8.61628 -8.60725 -6.86061 -5.78621 -3.27858 1.56528 2.08789 2.48013 2.76463 3.32490 3.37965 3.42887 3.44055 3.87670 4.22827 4.45416 4.65288 4.70840 4.79178 4.86037 4.95335 5.07055 5.14859 5.17605 5.36005 5.39144 5.53667 5.57264 5.73463 5.79552 5.83654 5.88431 6.02107 6.15431 6.20564 6.37536 6.52638 6.60223 6.63785 6.66686 6.87297 7.29814 7.60446 7.68008 7.75818 7.93383 8.24275 8.33880 9.16305 9.77870 10.26292 11.25956 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018230 B = 0.003737 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.591017 B = 7491.504120 C = 8538.862983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.595 5.595 3 C -0.263 4.263 4 H 0.070 0.930 5 C 0.006 3.994 6 N -0.904 5.904 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.278 1.278 11 C 0.144 3.856 12 C 0.093 3.907 13 N -0.707 5.707 14 C 0.584 3.416 15 O -0.522 6.522 16 C -0.018 4.018 17 C -0.125 4.125 18 C -0.084 4.084 19 C -0.170 4.170 20 C -0.168 4.168 21 C 0.006 3.994 22 N -0.287 5.287 23 N -0.275 5.275 24 C 0.087 3.913 25 H 0.032 0.968 26 H 0.044 0.956 27 H -0.001 1.001 28 H 0.254 0.746 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.398 0.602 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.182 0.818 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.422 -17.142 -0.078 19.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.317 5.317 3 C -0.393 4.393 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.548 5.548 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.204 1.204 11 C 0.016 3.984 12 C -0.032 4.032 13 N -0.358 5.358 14 C 0.365 3.635 15 O -0.397 6.397 16 C -0.147 4.147 17 C -0.135 4.135 18 C -0.103 4.103 19 C -0.207 4.207 20 C -0.205 4.205 21 C -0.171 4.171 22 N -0.117 5.117 23 N -0.063 5.063 24 C -0.054 4.054 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.017 0.983 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.231 0.769 34 H 0.131 0.869 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.199 0.801 40 H 0.106 0.894 41 H 0.116 0.884 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.367 -17.724 0.631 19.610 hybrid contribution 0.732 1.508 -0.213 1.690 sum 9.099 -16.217 0.417 18.600 Atomic orbital electron populations 1.20863 0.82189 0.95611 0.99713 1.43915 1.02024 1.00313 1.85451 1.19219 0.99078 0.85430 1.35529 0.91196 1.25094 0.97718 0.98783 0.97686 1.70053 1.18773 1.27560 1.38456 0.86222 0.78907 0.83869 0.77337 1.21387 1.21628 1.20373 1.21004 0.96501 0.88992 0.91941 1.22678 0.95769 0.82176 1.02586 1.46226 1.56959 1.25255 1.07377 1.17060 0.79263 0.82413 0.84767 1.90870 1.52837 1.64569 1.31417 1.21456 0.94558 0.86498 1.12178 1.19753 0.90542 0.94554 1.08659 1.20208 0.88603 0.96938 1.04539 1.22958 0.96409 1.02203 0.99172 1.23022 1.02300 1.02807 0.92396 1.23309 0.96951 0.90619 1.06258 1.73118 0.94670 1.22929 1.20965 1.45513 1.07331 1.02329 1.51106 1.22197 0.75414 1.03451 1.04299 0.94920 0.93726 0.98286 0.93566 0.93168 0.93977 0.91815 0.90937 0.76858 0.86931 0.88439 0.88603 0.88612 0.88325 0.80061 0.89440 0.88394 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 9.01 59.85 0.54 4.39 16 2 N -0.59 -14.45 2.92 -181.12 -0.53 -14.98 16 3 C -0.26 -7.05 9.66 -15.06 -0.15 -7.19 16 4 H 0.07 1.83 7.85 -52.49 -0.41 1.41 16 5 C 0.01 0.17 5.13 -17.43 -0.09 0.08 16 6 N -0.90 -26.05 10.67 55.49 0.59 -25.46 16 7 Si 0.91 21.58 29.57 -169.99 -5.03 16.55 16 8 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 11 C 0.14 2.74 5.82 -4.04 -0.02 2.71 16 12 C 0.09 1.74 6.00 -4.04 -0.02 1.72 16 13 N -0.71 -10.53 5.55 -61.47 -0.34 -10.87 16 14 C 0.58 9.52 6.83 -12.63 -0.09 9.43 16 15 O -0.52 -10.75 17.12 5.26 0.09 -10.66 16 16 C -0.02 -0.26 6.71 -82.05 -0.55 -0.81 16 17 C -0.12 -1.63 5.94 -104.03 -0.62 -2.24 16 18 C -0.08 -1.00 6.12 -91.77 -0.56 -1.56 16 19 C -0.17 -1.55 10.05 -26.73 -0.27 -1.82 16 20 C -0.17 -1.63 10.23 -26.73 -0.27 -1.91 16 21 C 0.01 0.07 11.41 -17.43 -0.20 -0.13 16 22 N -0.29 -3.67 11.90 30.59 0.36 -3.30 16 23 N -0.27 -3.44 3.75 -63.87 -0.24 -3.68 16 24 C 0.09 0.76 11.21 59.85 0.67 1.43 16 25 H 0.03 0.85 7.33 -51.93 -0.38 0.47 16 26 H 0.04 1.14 7.35 -51.92 -0.38 0.76 16 27 H 0.00 -0.03 7.84 -51.93 -0.41 -0.44 16 28 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 30 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.40 4.80 8.46 -40.82 -0.35 4.45 16 34 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 0.75 7.13 -51.93 -0.37 0.38 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.18 1.56 7.34 -52.49 -0.39 1.17 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.87 7.66 -51.93 -0.40 0.47 16 LS Contribution 357.22 15.07 5.38 5.38 Total: -1.00 -33.02 357.22 -7.76 -40.78 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.42 Total: 2.14 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -1.63 Total: 4.11 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.15 Total: -58.30 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.02 -7.76 -40.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690946674.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.815 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds