Wall clock time and date at job start Tue Mar 31 2020 03:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36939 * 119.99800 * 2 1 4 4 H 1.07998 * 120.00021 * 203.77634 * 3 2 1 5 5 C 1.38810 * 119.99957 * 23.78605 * 3 2 1 6 6 N 1.31620 * 120.00130 * 11.36091 * 5 3 2 7 7 Si 1.86798 * 119.99956 * 191.36253 * 5 3 2 8 8 H 1.48494 * 109.47196 * 89.99956 * 7 5 3 9 9 H 1.48502 * 109.47123 * 209.99910 * 7 5 3 10 10 H 1.48502 * 109.47279 * 329.99792 * 7 5 3 11 11 C 1.46501 * 119.99814 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.46839 * 269.99738 * 11 2 1 13 13 N 1.46504 * 109.47004 * 180.02562 * 12 11 2 14 14 C 1.34777 * 119.99800 * 180.02562 * 13 12 11 15 15 O 1.21624 * 120.00521 * 4.96333 * 14 13 12 16 16 C 1.47168 * 119.99796 * 184.96766 * 14 13 12 17 17 C 1.38410 * 126.88668 * 93.06989 * 16 14 13 18 18 C 1.50697 * 127.31901 * 359.97438 * 17 16 14 19 19 C 1.52996 * 117.49836 * 171.37636 * 18 17 16 20 20 C 1.53001 * 117.50085 * 240.00037 * 18 17 16 21 21 C 1.39666 * 105.35725 * 180.24200 * 17 16 14 22 22 N 1.30864 * 107.86707 * 359.60195 * 21 17 16 23 23 N 1.28441 * 110.92383 * 0.41897 * 22 21 17 24 24 C 1.46507 * 125.19308 * 179.75644 * 23 22 21 25 25 H 1.08997 * 109.46951 * 275.10724 * 1 2 3 26 26 H 1.09008 * 109.47175 * 35.10715 * 1 2 3 27 27 H 1.09005 * 109.47140 * 155.10732 * 1 2 3 28 28 H 0.96998 * 120.00090 * 179.97438 * 6 5 3 29 29 H 1.09001 * 109.46626 * 150.00174 * 11 2 1 30 30 H 1.09001 * 109.47428 * 30.00053 * 11 2 1 31 31 H 1.08996 * 109.47527 * 60.00545 * 12 11 2 32 32 H 1.09001 * 109.47368 * 300.00352 * 12 11 2 33 33 H 0.96999 * 119.99948 * 0.02562 * 13 12 11 34 34 H 1.09007 * 115.56024 * 25.68712 * 18 17 16 35 35 H 1.08998 * 117.49803 * 214.97714 * 19 18 17 36 36 H 1.08995 * 117.49851 * 359.97438 * 19 18 17 37 37 H 1.08999 * 117.49569 * 359.97438 * 20 18 17 38 38 H 1.09000 * 117.49919 * 145.01851 * 20 18 17 39 39 H 1.08000 * 126.06633 * 179.74167 * 21 17 16 40 40 H 1.08996 * 109.46940 * 274.70271 * 24 23 22 41 41 H 1.09001 * 109.46522 * 34.70098 * 24 23 22 42 42 H 1.08996 * 109.47084 * 154.69872 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1609 1.2257 -0.3771 5 6 1.5440 2.3370 0.4848 6 7 0.4086 2.2549 1.1455 7 14 2.3403 4.0025 0.1996 8 1 1.8432 4.5768 -1.0764 9 1 1.9961 4.9142 1.3201 10 1 3.8147 3.8405 0.1283 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4417 13 7 3.1855 -2.9794 1.4412 14 6 3.5221 -3.5637 2.6081 15 8 3.1401 -3.0865 3.6596 16 6 4.3519 -4.7791 2.6101 17 6 5.7302 -4.8439 2.7192 18 6 6.6907 -3.6912 2.8595 19 6 8.1525 -4.0231 3.1655 20 6 7.7564 -3.5236 1.7746 21 6 6.0419 -6.2042 2.6652 22 7 4.9211 -6.8685 2.5434 23 7 3.9162 -6.0695 2.5046 24 6 2.5162 -6.4794 2.3684 25 1 -0.3633 0.0915 1.0236 26 1 -0.3634 0.8408 -0.5911 27 1 -0.3634 -0.9322 -0.4326 28 1 -0.0144 3.0592 1.4847 29 1 3.1499 -1.1381 -0.5143 30 1 1.6084 -2.0282 -0.5147 31 1 1.5001 -1.8416 1.9555 32 1 3.0415 -0.9515 1.9559 33 1 3.4286 -3.3988 0.6009 34 1 6.2768 -2.7854 3.3027 35 1 8.7004 -3.3356 3.8099 36 1 8.4194 -5.0751 3.2658 37 1 7.7631 -4.2473 0.9596 38 1 8.0437 -2.5075 1.5041 39 1 7.0322 -6.6321 2.7174 40 1 2.2760 -6.6069 1.3129 41 1 2.3612 -7.4223 2.8928 42 1 1.8701 -5.7141 2.7983 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690946674.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:20 Heat of formation + Delta-G solvation = 72.151442 kcal Electronic energy + Delta-G solvation = -23219.344843 eV Core-core repulsion = 19816.184443 eV Total energy + Delta-G solvation = -3403.160399 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.59368 -40.57350 -38.16315 -37.87501 -35.83224 -34.13001 -33.36257 -32.03567 -29.74438 -28.06206 -27.91305 -25.67881 -24.53322 -23.51696 -23.12548 -22.43507 -21.20638 -20.78385 -19.11781 -18.71500 -17.64093 -16.97743 -16.87241 -16.63199 -16.55244 -16.20420 -15.51284 -15.43338 -15.16516 -14.94947 -14.52058 -14.18115 -14.08238 -13.83117 -13.67136 -13.14051 -12.97832 -12.81618 -12.66980 -12.48332 -12.31868 -12.11026 -12.04262 -11.99839 -11.79571 -11.70255 -11.39956 -11.24821 -10.67687 -10.26971 -10.20825 -9.54350 -8.86174 -7.85518 -5.36912 0.54528 0.99595 1.47063 1.47595 1.56451 1.57566 1.61475 2.12492 2.51268 3.06663 3.29903 3.38233 3.48457 3.81593 3.90199 3.97160 4.11962 4.20036 4.24686 4.27441 4.28502 4.30019 4.49577 4.52727 4.63295 4.83056 4.84048 4.90033 5.02303 5.04816 5.06970 5.26368 5.30121 5.31868 5.32383 5.45694 5.63394 5.71343 5.71855 6.29999 6.33578 6.96543 6.99673 7.12372 7.82227 8.24804 9.17546 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018230 B = 0.003737 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.591017 B = 7491.504120 C = 8538.862983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.613 5.613 3 C -0.268 4.268 4 H 0.076 0.924 5 C -0.050 4.050 6 N -0.938 5.938 7 Si 0.968 3.032 8 H -0.283 1.283 9 H -0.298 1.298 10 H -0.267 1.267 11 C 0.147 3.853 12 C 0.115 3.885 13 N -0.689 5.689 14 C 0.593 3.407 15 O -0.572 6.572 16 C -0.045 4.045 17 C -0.123 4.123 18 C -0.115 4.115 19 C -0.151 4.151 20 C -0.158 4.158 21 C 0.008 3.992 22 N -0.292 5.292 23 N -0.274 5.274 24 C 0.077 3.923 25 H 0.002 0.998 26 H 0.018 0.982 27 H 0.038 0.962 28 H 0.248 0.752 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.042 0.958 32 H 0.035 0.965 33 H 0.416 0.584 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.214 0.786 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.425 -19.140 -1.462 22.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.335 5.335 3 C -0.398 4.398 4 H 0.094 0.906 5 C -0.246 4.246 6 N -0.584 5.584 7 Si 0.796 3.204 8 H -0.209 1.209 9 H -0.225 1.225 10 H -0.192 1.192 11 C 0.020 3.980 12 C -0.011 4.011 13 N -0.340 5.340 14 C 0.376 3.624 15 O -0.450 6.450 16 C -0.174 4.174 17 C -0.134 4.134 18 C -0.134 4.134 19 C -0.188 4.188 20 C -0.195 4.195 21 C -0.169 4.169 22 N -0.122 5.122 23 N -0.062 5.062 24 C -0.062 4.062 25 H 0.020 0.980 26 H 0.037 0.963 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.253 0.747 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.231 0.769 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.400 -19.775 -0.804 22.358 hybrid contribution 0.152 2.021 0.215 2.038 sum 10.553 -17.754 -0.589 20.662 Atomic orbital electron populations 1.20625 0.82403 0.96463 0.97713 1.44150 1.02351 1.01512 1.85526 1.19585 0.99247 0.86622 1.34360 0.90630 1.25854 0.98473 1.02131 0.98131 1.70228 1.20281 1.27826 1.40045 0.85253 0.78576 0.79759 0.76792 1.20933 1.22482 1.19158 1.21140 0.97257 0.87702 0.91909 1.22104 0.94399 0.82810 1.01808 1.45879 1.56106 1.23861 1.08173 1.17282 0.78395 0.82720 0.83979 1.90842 1.54812 1.66184 1.33196 1.21147 0.94860 0.86375 1.14986 1.19997 0.90166 0.95565 1.07674 1.20163 0.89989 0.96017 1.07257 1.23100 0.93528 1.03596 0.98595 1.23082 1.00294 1.03332 0.92784 1.23789 0.97994 0.89765 1.05339 1.73123 0.95100 1.23013 1.21000 1.45797 1.08378 1.01501 1.50532 1.22488 0.73650 1.03896 1.06131 0.97977 0.96271 0.94347 0.94265 0.91723 0.90526 0.93925 0.94624 0.74675 0.89817 0.87709 0.86584 0.87490 0.88208 0.76934 0.87060 0.86582 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.31 9.01 127.77 1.15 9.46 16 2 N -0.61 -29.59 2.92 -726.93 -2.12 -31.71 16 3 C -0.27 -14.37 9.66 84.03 0.81 -13.55 16 4 H 0.08 3.89 7.85 -2.91 -0.02 3.86 16 5 C -0.05 -2.81 5.13 84.86 0.44 -2.37 16 6 N -0.94 -55.61 10.67 21.65 0.23 -55.37 16 7 Si 0.97 44.80 29.57 68.60 2.03 46.82 16 8 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 9 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 11 C 0.15 5.36 5.82 86.38 0.50 5.86 16 12 C 0.12 4.35 6.00 86.38 0.52 4.87 16 13 N -0.69 -20.18 5.55 -466.64 -2.59 -22.77 16 14 C 0.59 19.59 6.83 86.59 0.59 20.18 16 15 O -0.57 -24.56 17.12 -4.11 -0.07 -24.63 16 16 C -0.04 -1.25 6.71 40.79 0.27 -0.97 16 17 C -0.12 -3.05 5.94 -19.48 -0.12 -3.17 16 18 C -0.11 -2.64 6.12 -11.54 -0.07 -2.71 16 19 C -0.15 -2.39 10.05 30.59 0.31 -2.08 16 20 C -0.16 -2.72 10.23 30.60 0.31 -2.41 16 21 C 0.01 0.16 11.41 85.18 0.97 1.14 16 22 N -0.29 -6.77 11.90 -57.14 -0.68 -7.45 16 23 N -0.27 -6.42 3.75 -356.00 -1.33 -7.76 16 24 C 0.08 1.24 11.21 127.77 1.43 2.67 16 25 H 0.00 0.10 7.33 -2.39 -0.02 0.08 16 26 H 0.02 0.98 7.35 -2.38 -0.02 0.96 16 27 H 0.04 1.51 7.84 -2.38 -0.02 1.49 16 28 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.06 2.20 8.03 -2.39 -0.02 2.18 16 30 H 0.08 2.30 7.86 -2.39 -0.02 2.28 16 31 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.42 9.25 8.46 -92.71 -0.78 8.47 16 34 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 35 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.12 1.36 7.13 -2.39 -0.02 1.35 16 37 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.21 2.81 7.34 -2.91 -0.02 2.79 16 40 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.09 1.53 7.66 -2.39 -0.02 1.51 16 Total: -1.00 -73.56 357.22 2.82 -70.74 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.24 Total: 15.22 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 7.12 Total: 16.91 kcal Atomic # 7 Polarization: -118.57 SS G_CDS: -6.50 Total: -125.07 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.07 Total: -24.63 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -73.56 2.82 -70.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690946674.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.892 kcal (2) G-P(sol) polarization free energy of solvation -73.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds