Wall clock time and date at job start Tue Mar 31 2020 03:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.46984 * 2 1 4 4 C 1.36942 * 120.00058 * 275.30710 * 3 2 1 5 5 H 1.07994 * 119.99704 * 37.58010 * 4 3 2 6 6 C 1.38815 * 120.00005 * 217.57741 * 4 3 2 7 7 N 1.31618 * 119.99928 * 21.43794 * 6 4 3 8 8 Si 1.86798 * 119.99807 * 201.43124 * 6 4 3 9 9 H 1.48499 * 109.47259 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46841 * 120.00364 * 8 6 4 11 11 H 1.48503 * 109.47064 * 240.00049 * 8 6 4 12 12 C 1.46496 * 120.00221 * 95.31250 * 3 2 1 13 13 C 1.53007 * 109.46838 * 269.99962 * 12 3 2 14 14 N 1.46505 * 109.46771 * 179.97438 * 13 12 3 15 15 C 1.34773 * 119.99435 * 179.97438 * 14 13 12 16 16 O 1.21602 * 120.00334 * 0.02562 * 15 14 13 17 17 C 1.47437 * 119.99697 * 179.97438 * 15 14 13 18 18 C 1.41702 * 126.50037 * 359.82751 * 17 15 14 19 19 N 1.30290 * 108.00671 * 179.97438 * 18 17 15 20 20 N 1.40509 * 109.01748 * 359.97438 * 19 18 17 21 21 C 1.34210 * 108.28682 * 0.22918 * 20 19 18 22 22 C 1.51387 * 110.37355 * 179.67822 * 21 20 19 23 23 C 1.54565 * 104.14563 * 343.53381 * 22 21 20 24 24 C 1.47260 * 140.80901 * 180.25309 * 20 19 18 25 25 H 1.09002 * 109.47003 * 59.99912 * 1 2 3 26 26 H 1.08997 * 109.47401 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47413 * 300.00234 * 1 2 3 28 28 H 1.08995 * 109.47499 * 240.00230 * 2 1 3 29 29 H 1.08997 * 109.47071 * 119.99589 * 2 1 3 30 30 H 0.96998 * 119.99938 * 180.02562 * 7 6 4 31 31 H 1.08992 * 109.47755 * 149.99707 * 12 3 2 32 32 H 1.09001 * 109.47188 * 29.99478 * 12 3 2 33 33 H 1.08992 * 109.47226 * 59.99930 * 13 12 3 34 34 H 1.09001 * 109.46836 * 299.99732 * 13 12 3 35 35 H 0.96995 * 120.00352 * 359.97438 * 14 13 12 36 36 H 1.07992 * 126.00577 * 0.02562 * 18 17 15 37 37 H 1.09001 * 110.49559 * 224.86970 * 22 21 20 38 38 H 1.09002 * 110.49616 * 102.20234 * 22 21 20 39 39 H 1.09003 * 110.99708 * 266.94386 * 23 22 21 40 40 H 1.08999 * 111.02219 * 143.13653 * 23 22 21 41 41 H 1.09008 * 110.22689 * 78.05691 * 24 20 19 42 42 H 1.08995 * 110.23023 * 316.18800 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0634 -1.1809 5 1 1.4105 1.9279 -1.9627 6 6 3.2111 2.9290 -1.3728 7 7 4.3027 2.7981 -0.6491 8 14 3.0992 4.2797 -2.6584 9 1 1.7771 4.2142 -3.3313 10 1 3.2549 5.6024 -2.0015 11 1 4.1766 4.0965 -3.6639 12 6 2.3732 2.0327 1.2632 13 6 1.1425 2.7383 1.8365 14 7 1.4973 3.3893 3.1001 15 6 0.5648 4.0767 3.7889 16 8 -0.5710 4.1561 3.3619 17 6 0.9217 4.7314 5.0609 18 6 2.1939 4.7240 5.6848 19 7 2.1055 5.4116 6.7879 20 7 0.7912 5.8889 6.9259 21 6 0.0766 5.4655 5.8717 22 6 -1.3543 5.9483 5.9768 23 6 -1.5032 6.3694 7.4565 24 6 -0.0421 6.6905 7.8378 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.0488 3.4032 -0.7830 31 1 3.1616 2.7641 1.0860 32 1 2.7254 1.2834 1.9721 33 1 0.3541 2.0069 2.0138 34 1 0.7902 3.4876 1.1276 35 1 2.4031 3.3256 3.4409 36 1 3.0814 4.2351 5.3111 37 1 -2.0477 5.1419 5.7379 38 1 -1.5186 6.8016 5.3187 39 1 -1.8925 5.5486 8.0589 40 1 -2.1343 7.2531 7.5500 41 1 0.1595 7.7525 7.6971 42 1 0.1490 6.4049 8.8721 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691021708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:08 Heat of formation + Delta-G solvation = 43.997333 kcal Electronic energy + Delta-G solvation = -23192.315237 eV Core-core repulsion = 19787.933984 eV Total energy + Delta-G solvation = -3404.381253 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.82130 -40.23442 -38.03846 -37.28922 -35.51210 -33.81335 -32.27428 -31.18712 -30.44878 -29.49530 -27.95484 -26.07572 -23.95485 -23.28872 -22.69828 -22.10497 -21.38247 -20.62766 -18.84949 -18.23030 -17.44968 -17.02607 -16.75411 -16.25143 -15.81586 -15.64528 -15.46230 -15.40473 -14.93799 -14.67208 -14.42542 -14.25262 -14.09733 -13.98483 -13.69423 -13.21483 -13.04029 -12.99978 -12.63525 -12.51431 -12.34337 -12.27185 -12.12110 -12.05366 -11.97038 -11.64442 -11.47246 -10.91492 -10.53165 -10.35908 -10.07664 -9.59683 -8.58100 -7.84105 -5.46979 0.46818 1.08293 1.22152 1.43539 1.48376 1.57527 2.31463 2.45461 2.53428 3.05996 3.23876 3.45738 3.64100 3.80457 3.89250 3.97876 4.13760 4.33245 4.36829 4.47001 4.47732 4.50282 4.53342 4.70476 4.81092 4.84799 4.86993 4.87996 4.98762 5.07266 5.10819 5.26559 5.31106 5.35484 5.49521 5.59005 5.65809 5.69011 5.78024 6.46753 6.52231 6.72624 7.16561 7.35060 7.84807 8.37020 9.11749 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.003585 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.789205 B = 7807.683095 C = 8284.008548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 N -0.598 5.598 4 C -0.270 4.270 5 H 0.052 0.948 6 C -0.028 4.028 7 N -0.910 5.910 8 Si 0.950 3.050 9 H -0.272 1.272 10 H -0.290 1.290 11 H -0.286 1.286 12 C 0.146 3.854 13 C 0.123 3.877 14 N -0.711 5.711 15 C 0.587 3.413 16 O -0.595 6.595 17 C -0.309 4.309 18 C 0.089 3.911 19 N -0.302 5.302 20 N -0.386 5.386 21 C 0.129 3.871 22 C -0.075 4.075 23 C -0.114 4.114 24 C 0.113 3.887 25 H 0.034 0.966 26 H 0.069 0.931 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.253 0.747 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.029 0.971 35 H 0.409 0.591 36 H 0.219 0.781 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.140 0.860 41 H 0.110 0.890 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.101 6.521 19.088 22.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.319 5.319 4 C -0.400 4.400 5 H 0.070 0.930 6 C -0.226 4.226 7 N -0.554 5.554 8 Si 0.778 3.222 9 H -0.197 1.197 10 H -0.217 1.217 11 H -0.213 1.213 12 C 0.018 3.982 13 C -0.003 4.003 14 N -0.361 5.361 15 C 0.377 3.623 16 O -0.477 6.477 17 C -0.324 4.324 18 C -0.098 4.098 19 N -0.120 5.120 20 N -0.165 5.165 21 C -0.006 4.006 22 C -0.114 4.114 23 C -0.152 4.152 24 C -0.006 4.006 25 H 0.053 0.947 26 H 0.088 0.912 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.244 0.756 36 H 0.235 0.765 37 H 0.116 0.884 38 H 0.126 0.874 39 H 0.117 0.883 40 H 0.158 0.842 41 H 0.128 0.872 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.984 7.150 20.014 23.074 hybrid contribution 0.396 0.256 -1.632 1.699 sum -8.588 7.406 18.382 21.599 Atomic orbital electron populations 1.22215 0.97973 1.00845 1.00393 1.21012 0.93197 0.85417 0.99268 1.43865 1.76404 1.09671 1.01999 1.19195 1.04342 1.21745 0.94718 0.93022 1.25750 0.94017 1.02828 1.00025 1.70088 1.03571 1.37865 1.43831 0.85501 0.77676 0.79732 0.79292 1.19689 1.21709 1.21290 1.20915 0.94354 0.96737 0.86162 1.21902 0.99898 0.95261 0.83238 1.45706 1.13755 1.53262 1.23419 1.17624 0.84222 0.77374 0.83124 1.90689 1.21923 1.63864 1.71258 1.19654 0.95561 1.16225 1.00993 1.24608 0.97790 0.96245 0.91150 1.77095 0.95765 1.18182 1.20922 1.50593 1.06703 1.39491 1.19729 1.23115 0.96109 0.92820 0.88569 1.21190 0.87793 1.02863 0.99542 1.22931 0.93752 1.05627 0.92880 1.22964 0.88228 0.95528 0.93832 0.94674 0.91222 0.94055 0.94445 0.93016 0.93734 0.90884 0.93665 0.93317 0.95246 0.75565 0.76492 0.88428 0.87365 0.88259 0.84176 0.87201 0.86975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.66 10.21 71.98 0.73 -4.92 16 2 C 0.14 5.68 6.44 86.38 0.56 6.24 16 3 N -0.60 -29.55 2.43 -702.02 -1.71 -31.26 16 4 C -0.27 -14.80 9.45 84.03 0.79 -14.01 16 5 H 0.05 2.88 7.92 -2.91 -0.02 2.86 16 6 C -0.03 -1.55 4.95 84.86 0.42 -1.13 16 7 N -0.91 -51.62 11.47 21.65 0.25 -51.37 16 8 Si 0.95 44.88 29.60 68.60 2.03 46.91 16 9 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 10 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 12 C 0.15 6.60 5.45 86.38 0.47 7.07 16 13 C 0.12 5.24 6.00 86.38 0.52 5.76 16 14 N -0.71 -25.46 5.55 -466.35 -2.59 -28.04 16 15 C 0.59 21.79 7.81 86.67 0.68 22.47 16 16 O -0.59 -26.00 16.90 -4.04 -0.07 -26.07 16 17 C -0.31 -9.48 6.15 -20.00 -0.12 -9.60 16 18 C 0.09 2.36 11.52 85.78 0.99 3.35 16 19 N -0.30 -8.16 12.64 -56.08 -0.71 -8.87 16 20 N -0.39 -8.74 4.81 -328.19 -1.58 -10.32 16 21 C 0.13 3.32 7.31 42.41 0.31 3.63 16 22 C -0.08 -1.27 6.86 30.60 0.21 -1.06 16 23 C -0.11 -0.81 7.18 31.59 0.23 -0.59 16 24 C 0.11 1.24 7.77 86.70 0.67 1.91 16 25 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.04 1.53 6.64 -2.39 -0.02 1.51 16 28 H 0.04 1.60 8.08 -2.39 -0.02 1.58 16 29 H 0.05 1.96 7.83 -2.39 -0.02 1.94 16 30 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 31 H 0.07 3.75 5.52 -2.39 -0.01 3.73 16 32 H 0.05 1.87 7.86 -2.39 -0.02 1.85 16 33 H 0.05 2.09 6.64 -2.39 -0.02 2.07 16 34 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.41 12.24 7.44 -92.71 -0.69 11.55 16 36 H 0.22 4.34 7.52 -2.91 -0.02 4.31 16 37 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.14 0.06 8.14 -2.39 -0.02 0.05 16 41 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -74.82 348.87 2.42 -72.40 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.34 Total: 17.51 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: 6.46 Total: 19.11 kcal Atomic # 7 Polarization: -123.52 SS G_CDS: -6.34 Total: -129.86 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.07 Total: -26.07 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -74.82 2.42 -72.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691021708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.395 kcal (2) G-P(sol) polarization free energy of solvation -74.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds