Wall clock time and date at job start Tue Mar 31 2020 03:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34257 * 125.75900 * 2 1 4 4 C 1.38044 * 107.42336 * 179.97438 * 3 2 1 5 5 C 1.47422 * 126.41786 * 179.97438 * 4 3 2 6 6 O 1.21604 * 119.99713 * 317.06627 * 5 4 3 7 7 N 1.34770 * 120.00323 * 137.07485 * 5 4 3 8 8 C 1.46929 * 120.62816 * 3.41713 * 7 5 4 9 9 C 1.52768 * 109.01082 * 233.58719 * 8 7 5 10 10 C 1.53040 * 109.37924 * 305.59089 * 9 8 7 11 11 C 1.53034 * 109.54054 * 61.23789 * 10 9 8 12 12 H 1.09007 * 109.49860 * 58.58739 * 11 10 9 13 13 C 1.53004 * 109.52429 * 178.66275 * 11 10 9 14 14 N 1.46507 * 109.47112 * 184.85414 * 13 11 10 15 15 C 1.36929 * 119.99790 * 180.02562 * 14 13 11 16 16 H 1.08007 * 120.00172 * 0.02562 * 15 14 13 17 17 C 1.38815 * 119.99981 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99952 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99989 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47221 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47421 * 120.00108 * 19 17 15 22 22 H 1.48504 * 109.47173 * 240.00215 * 19 17 15 23 23 C 1.46925 * 120.63750 * 183.70155 * 7 5 4 24 24 C 1.41296 * 107.16574 * 359.97438 * 4 3 2 25 25 N 1.30445 * 108.02683 * 359.97438 * 24 4 3 26 26 H 1.09001 * 109.46948 * 90.00498 * 1 2 3 27 27 H 1.08999 * 109.47616 * 210.00412 * 1 2 3 28 28 H 1.09006 * 109.47205 * 330.00627 * 1 2 3 29 29 H 1.08002 * 126.28544 * 0.23842 * 3 2 1 30 30 H 1.09001 * 109.59029 * 353.42081 * 8 7 5 31 31 H 1.08999 * 109.58572 * 113.84985 * 8 7 5 32 32 H 1.08996 * 109.56514 * 185.55156 * 9 8 7 33 33 H 1.09000 * 109.35618 * 65.49458 * 9 8 7 34 34 H 1.09001 * 109.46205 * 301.21628 * 10 9 8 35 35 H 1.09006 * 109.44698 * 181.24965 * 10 9 8 36 36 H 1.09001 * 109.47278 * 304.85442 * 13 11 10 37 37 H 1.09001 * 109.46919 * 64.85733 * 13 11 10 38 38 H 0.96999 * 119.99708 * 0.02562 * 14 13 11 39 39 H 0.97000 * 120.00201 * 179.97438 * 18 17 15 40 40 H 1.08992 * 109.59011 * 246.15665 * 23 7 5 41 41 H 1.09007 * 109.58319 * 6.43737 * 23 7 5 42 42 H 1.07998 * 125.98770 * 180.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5599 0.6552 0.0006 5 6 4.7638 1.5060 0.0003 6 8 4.8155 2.4860 -0.7177 7 7 5.8072 1.1975 0.7956 8 6 5.7904 -0.0236 1.6125 9 6 6.0713 0.3472 3.0676 10 6 7.3787 1.1388 3.1466 11 6 7.2457 2.4291 2.3345 12 1 6.4161 3.0198 2.7233 13 6 8.5412 3.2361 2.4410 14 7 8.3725 4.5225 1.7603 15 6 9.4072 5.4187 1.7241 16 1 10.3477 5.1771 2.1970 17 6 9.2476 6.6373 1.0787 18 7 8.1017 6.9314 0.5020 19 14 10.6593 7.8596 1.0287 20 1 11.8303 7.2930 1.7449 21 1 11.0281 8.1324 -0.3837 22 1 10.2420 9.1249 1.6846 23 6 6.9805 2.0790 0.8670 24 6 3.5310 -0.7575 0.0016 25 7 2.2826 -1.1357 0.0021 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8901 0.5138 29 1 1.9166 2.1169 0.0036 30 1 4.8117 -0.4982 1.5403 31 1 6.5590 -0.7107 1.2585 32 1 6.1586 -0.5601 3.6652 33 1 5.2528 0.9575 3.4494 34 1 8.1925 0.5372 2.7418 35 1 7.5916 1.3849 4.1870 36 1 8.7764 3.4089 3.4912 37 1 9.3544 2.6813 1.9730 38 1 7.5280 4.7392 1.3353 39 1 7.9900 7.7831 0.0513 40 1 7.8481 1.5669 0.4509 41 1 6.7878 2.9903 0.3008 42 1 4.3917 -1.4098 0.0026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752791795.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:24 Heat of formation + Delta-G solvation = 58.379708 kcal Electronic energy + Delta-G solvation = -23457.617292 eV Core-core repulsion = 20053.859706 eV Total energy + Delta-G solvation = -3403.757586 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.59152 -39.62164 -37.34754 -34.89788 -33.72277 -32.68128 -31.62967 -30.55421 -29.67336 -27.53494 -25.45546 -25.33661 -23.10590 -22.34452 -21.38706 -21.16221 -20.01287 -19.06638 -17.51484 -16.92558 -16.35583 -15.83008 -15.62674 -14.91440 -14.70626 -14.67305 -14.42990 -13.93346 -13.59414 -13.46713 -13.21208 -13.04388 -12.91999 -12.76728 -12.70753 -12.35096 -12.25869 -11.38983 -11.21118 -11.00351 -10.96020 -10.79727 -10.57982 -10.32256 -10.22079 -9.91955 -9.75433 -9.63107 -9.53116 -8.81951 -8.78577 -8.34668 -6.83405 -5.66852 -2.96300 1.46933 2.10521 2.13094 3.07861 3.41243 3.49140 3.54054 3.56837 4.19505 4.58632 4.64601 4.70435 4.76195 4.85487 4.86901 4.99419 5.02125 5.12576 5.27586 5.30292 5.43150 5.48822 5.59265 5.67000 5.74697 5.89383 5.93378 6.04562 6.17822 6.20062 6.20427 6.27666 6.47335 6.58355 6.63129 6.77546 6.84782 6.95315 7.31760 7.65607 7.77988 8.45968 8.50953 9.61996 10.20495 10.54818 11.55570 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022610 B = 0.003513 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.080576 B = 7968.984406 C = 8867.059632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.367 5.367 3 C 0.116 3.884 4 C -0.280 4.280 5 C 0.589 3.411 6 O -0.533 6.533 7 N -0.605 5.605 8 C 0.099 3.901 9 C -0.133 4.133 10 C -0.112 4.112 11 C -0.107 4.107 12 H 0.073 0.927 13 C 0.161 3.839 14 N -0.733 5.733 15 C -0.240 4.240 16 H 0.070 0.930 17 C -0.014 4.014 18 N -0.929 5.929 19 Si 0.905 3.095 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.122 3.878 24 C 0.077 3.923 25 N -0.300 5.300 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.186 0.814 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.021 0.979 37 H 0.020 0.980 38 H 0.385 0.615 39 H 0.254 0.746 40 H 0.065 0.935 41 H 0.103 0.897 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.150 -19.243 3.015 24.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.147 5.147 3 C -0.034 4.034 4 C -0.295 4.295 5 C 0.376 3.624 6 O -0.410 6.410 7 N -0.337 5.337 8 C -0.024 4.024 9 C -0.171 4.171 10 C -0.150 4.150 11 C -0.126 4.126 12 H 0.091 0.909 13 C 0.033 3.967 14 N -0.378 5.378 15 C -0.371 4.371 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.578 5.578 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.220 1.220 23 C 0.000 4.000 24 C -0.110 4.110 25 N -0.121 5.121 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.203 0.797 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.219 0.781 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.122 0.878 42 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -14.930 -19.642 2.641 24.814 hybrid contribution 1.012 1.483 -0.120 1.800 sum -13.918 -18.159 2.521 23.018 Atomic orbital electron populations 1.21965 0.73588 1.04875 1.03847 1.48343 1.07103 1.03763 1.55463 1.22908 0.89923 0.93713 0.96899 1.20296 0.93627 0.93795 1.21758 1.17325 0.81571 0.83833 0.79636 1.90849 1.81147 1.28435 1.40536 1.47978 1.18421 1.24199 1.43145 1.21907 1.02623 0.86895 0.91009 1.21829 0.98822 1.00509 0.95959 1.21522 0.96837 0.96195 1.00466 1.21684 1.00099 0.96036 0.94826 0.90864 1.20636 0.93084 0.87283 0.95745 1.42427 1.15474 1.14274 1.65618 1.19251 0.93138 0.95758 1.28979 0.91196 1.24757 0.97099 0.98169 1.00991 1.69686 1.23506 1.23590 1.40993 0.86140 0.81545 0.81440 0.77192 1.20619 1.21902 1.21957 1.21715 0.85924 0.95189 0.97127 1.24085 0.95193 0.93754 0.97961 1.77145 1.01843 1.07953 1.25121 0.90303 0.88967 0.89043 0.79676 0.89297 0.91456 0.91029 0.91679 0.91762 0.91641 0.96121 0.96236 0.78076 0.93575 0.91650 0.87840 0.79165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.49 11.44 59.84 0.68 1.18 16 2 N -0.37 -3.56 3.98 -67.60 -0.27 -3.83 16 3 C 0.12 1.27 11.49 -16.56 -0.19 1.08 16 4 C -0.28 -3.62 5.33 -105.07 -0.56 -4.18 16 5 C 0.59 9.65 7.59 -12.52 -0.10 9.56 16 6 O -0.53 -11.23 16.52 5.27 0.09 -11.15 16 7 N -0.60 -8.88 2.98 -174.30 -0.52 -9.40 16 8 C 0.10 1.04 5.67 -3.93 -0.02 1.02 16 9 C -0.13 -1.38 6.07 -26.83 -0.16 -1.54 16 10 C -0.11 -1.39 5.17 -26.69 -0.14 -1.53 16 11 C -0.11 -1.77 2.37 -90.50 -0.21 -1.99 16 12 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 13 C 0.16 3.27 5.66 -4.04 -0.02 3.25 16 14 N -0.73 -19.17 5.38 -59.90 -0.32 -19.49 16 15 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 16 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 17 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 18 N -0.93 -29.20 13.06 55.49 0.72 -28.47 16 19 Si 0.91 23.01 29.55 -169.99 -5.02 17.99 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 23 C 0.12 2.11 5.51 -3.71 -0.02 2.09 16 24 C 0.08 0.84 9.57 -16.98 -0.16 0.68 16 25 N -0.30 -3.40 12.50 30.86 0.39 -3.02 16 26 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.19 1.68 8.06 -52.49 -0.42 1.25 16 30 H 0.09 0.83 4.16 -51.93 -0.22 0.61 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.39 10.77 6.90 -40.82 -0.28 10.48 16 39 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.10 2.23 6.23 -51.93 -0.32 1.91 16 42 H 0.19 1.56 7.10 -52.49 -0.37 1.19 16 LS Contribution 342.93 15.07 5.17 5.17 Total: -1.00 -36.63 342.93 -7.15 -43.78 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.24 Total: 6.38 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -1.15 Total: 2.04 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: 0.00 Total: -64.21 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.63 -7.15 -43.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752791795.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.163 kcal (2) G-P(sol) polarization free energy of solvation -36.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds