Wall clock time and date at job start Tue Mar 31 2020 03:17:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09007 * 109.46481 * 2 1
4 4 C 1.50697 * 109.47407 * 240.00589 * 2 1 3
5 5 O 1.21284 * 119.99843 * 267.04130 * 4 2 1
6 6 N 1.34774 * 120.00389 * 87.03584 * 4 2 1
7 7 C 1.47031 * 125.64786 * 4.79383 * 6 4 2
8 8 C 1.54330 * 107.26567 * 178.85130 * 7 6 4
9 9 C 1.55158 * 103.02219 * 338.13753 * 8 7 6
10 10 H 1.08999 * 111.00901 * 277.23890 * 9 8 7
11 11 C 1.53000 * 111.03625 * 153.39631 * 9 8 7
12 12 N 1.46500 * 109.47171 * 72.78792 * 11 9 8
13 13 C 1.36935 * 119.99924 * 180.02562 * 12 11 9
14 14 H 1.07991 * 120.00152 * 359.97438 * 13 12 11
15 15 C 1.38820 * 119.99487 * 180.02562 * 13 12 11
16 16 N 1.31617 * 120.00130 * 359.97438 * 15 13 12
17 17 Si 1.86805 * 119.99589 * 179.97438 * 15 13 12
18 18 H 1.48507 * 109.46905 * 60.00068 * 17 15 13
19 19 H 1.48493 * 109.46992 * 179.97438 * 17 15 13
20 20 H 1.48494 * 109.47087 * 300.00037 * 17 15 13
21 21 C 1.47422 * 125.65223 * 185.10567 * 6 4 2
22 22 N 1.46496 * 109.47202 * 119.99801 * 2 1 3
23 23 C 1.34950 * 126.03409 * 35.00708 * 22 2 1
24 24 C 1.35318 * 107.74567 * 179.76505 * 23 22 2
25 25 C 1.39872 * 107.91914 * 0.22734 * 24 23 22
26 26 N 1.30839 * 108.20008 * 0.02562 * 25 24 23
27 27 H 1.09004 * 109.46881 * 180.10699 * 1 2 3
28 28 H 1.08996 * 109.47311 * 300.10890 * 1 2 3
29 29 H 1.09005 * 109.47117 * 60.11298 * 1 2 3
30 30 H 1.08999 * 109.87979 * 298.40065 * 7 6 4
31 31 H 1.09000 * 109.88019 * 59.55966 * 7 6 4
32 32 H 1.09004 * 110.84607 * 219.67138 * 8 7 6
33 33 H 1.08996 * 110.67149 * 96.52467 * 8 7 6
34 34 H 1.08994 * 109.46999 * 192.79093 * 11 9 8
35 35 H 1.09007 * 109.47060 * 312.79089 * 11 9 8
36 36 H 0.96999 * 120.00037 * 359.97438 * 12 11 9
37 37 H 0.97005 * 119.99689 * 179.97438 * 16 15 13
38 38 H 1.09004 * 110.36574 * 322.93025 * 21 6 4
39 39 H 1.08992 * 110.36940 * 85.25213 * 21 6 4
40 40 H 1.07995 * 126.12833 * 0.03391 * 23 22 2
41 41 H 1.07996 * 126.04147 * 180.24359 * 24 23 22
42 42 H 1.07998 * 125.89954 * 179.97438 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0278 0.0000
4 6 2.0324 -0.7103 -1.2305
5 8 2.2857 -1.8955 -1.1856
6 7 2.2002 -0.0285 -2.3809
7 6 2.0281 1.4219 -2.5503
8 6 2.3524 1.7527 -4.0225
9 6 3.2295 0.5520 -4.4656
10 1 4.2678 0.6949 -4.1661
11 6 3.1237 0.3219 -5.9745
12 7 3.8496 1.3797 -6.6819
13 6 3.8937 1.3824 -8.0505
14 1 3.3938 0.6046 -8.6084
15 6 4.5821 2.3845 -8.7207
16 7 5.1918 3.3321 -8.0407
17 14 4.6428 2.3878 -10.5878
18 1 3.2623 2.4778 -11.1277
19 1 5.4337 3.5545 -11.0551
20 1 5.2801 1.1342 -11.0645
21 6 2.5803 -0.6142 -3.6792
22 7 2.0184 -0.6905 1.1962
23 6 1.4402 -1.7559 1.7894
24 6 2.1993 -2.0959 2.8568
25 6 3.2754 -1.2046 2.9210
26 7 3.1659 -0.3596 1.9281
27 1 -0.3633 -1.0277 0.0019
28 1 -0.3634 0.5155 0.8890
29 1 -0.3633 0.5121 -0.8910
30 1 0.9996 1.7021 -2.3232
31 1 2.7139 1.9558 -1.8925
32 1 2.9105 2.6861 -4.0964
33 1 1.4394 1.8030 -4.6157
34 1 3.5567 -0.6464 -6.2256
35 1 2.0752 0.3393 -6.2721
36 1 4.2984 2.0785 -6.1808
37 1 5.6731 4.0321 -8.5090
38 1 3.2989 -1.4212 -3.5355
39 1 1.6976 -0.9801 -4.2034
40 1 0.5364 -2.2514 1.4672
41 1 2.0082 -2.9114 3.5385
42 1 4.0605 -1.2121 3.6626
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001752930564.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:17:09
Heat of formation + Delta-G solvation = 62.455600 kcal
Electronic energy + Delta-G solvation = -23035.455948 eV
Core-core repulsion = 19631.875106 eV
Total energy + Delta-G solvation = -3403.580842 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-41.50714 -40.09480 -37.82065 -34.92475 -34.64498 -32.29599 -30.46130 -30.18077
-29.73313 -29.06756 -26.07729 -24.66382 -23.18000 -22.44166 -21.28306 -21.04625
-20.15181 -19.29949 -17.69865 -17.45431 -17.08339 -16.14589 -15.62061 -15.13709
-14.74952 -14.39890 -14.38232 -13.80954 -13.75467 -13.54770 -13.26474 -13.18015
-13.03840 -12.78913 -12.66659 -12.58604 -12.43626 -12.05154 -11.72451 -11.23783
-10.88869 -10.85895 -10.73304 -10.57219 -10.46158 -10.28432 -10.09571 -9.74084
-9.53653 -8.91363 -8.79751 -8.73257 -6.97341 -5.80561 -3.09593 1.64335
2.05189 2.38595 2.72994 2.88723 3.41904 3.46477 3.47362 4.03645
4.17969 4.41326 4.52854 4.62379 4.63569 4.76842 4.78207 4.93931
5.03954 5.11870 5.21947 5.31170 5.36034 5.47148 5.51398 5.56231
5.63608 5.80094 5.86015 5.91061 5.94773 6.05850 6.07178 6.31851
6.32787 6.47629 6.66537 6.77245 6.77751 7.29590 7.53751 7.66023
7.86764 8.38165 9.49574 10.05988 10.40823 11.42197
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.041048 B = 0.002626 C = 0.002614
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 681.958751 B =10662.040488 C =10708.397093
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.147 3.853
3 H 0.122 0.878
4 C 0.518 3.482
5 O -0.529 6.529
6 N -0.610 5.610
7 C 0.092 3.908
8 C -0.120 4.120
9 C -0.105 4.105
10 H 0.086 0.914
11 C 0.165 3.835
12 N -0.731 5.731
13 C -0.241 4.241
14 H 0.070 0.930
15 C -0.013 4.013
16 N -0.934 5.934
17 Si 0.908 3.092
18 H -0.286 1.286
19 H -0.291 1.291
20 H -0.286 1.286
21 C 0.113 3.887
22 N -0.359 5.359
23 C 0.076 3.924
24 C -0.279 4.279
25 C 0.048 3.952
26 N -0.297 5.297
27 H 0.074 0.926
28 H 0.081 0.919
29 H 0.089 0.911
30 H 0.069 0.931
31 H 0.070 0.930
32 H 0.089 0.911
33 H 0.081 0.919
34 H 0.022 0.978
35 H 0.023 0.977
36 H 0.384 0.616
37 H 0.256 0.744
38 H 0.079 0.921
39 H 0.073 0.927
40 H 0.170 0.830
41 H 0.147 0.853
42 H 0.183 0.817
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.382 -5.958 20.795 24.443
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.041 3.959
3 H 0.140 0.860
4 C 0.303 3.697
5 O -0.404 6.404
6 N -0.344 5.344
7 C -0.030 4.030
8 C -0.158 4.158
9 C -0.125 4.125
10 H 0.104 0.896
11 C 0.037 3.963
12 N -0.375 5.375
13 C -0.373 4.373
14 H 0.088 0.912
15 C -0.209 4.209
16 N -0.582 5.582
17 Si 0.739 3.261
18 H -0.212 1.212
19 H -0.217 1.217
20 H -0.212 1.212
21 C -0.009 4.009
22 N -0.141 5.141
23 C -0.070 4.070
24 C -0.308 4.308
25 C -0.139 4.139
26 N -0.117 5.117
27 H 0.093 0.907
28 H 0.100 0.900
29 H 0.108 0.892
30 H 0.088 0.912
31 H 0.089 0.911
32 H 0.107 0.893
33 H 0.099 0.901
34 H 0.040 0.960
35 H 0.041 0.959
36 H 0.218 0.782
37 H 0.066 0.934
38 H 0.097 0.903
39 H 0.091 0.909
40 H 0.187 0.813
41 H 0.165 0.835
42 H 0.200 0.800
Dipole moment (debyes) X Y Z Total
from point charges -10.812 -5.593 20.009 23.421
hybrid contribution -0.057 -0.414 -0.539 0.682
sum -10.869 -6.007 19.470 23.094
Atomic orbital electron populations
1.22094 0.90231 1.04476 1.04745 1.21064 0.96399 0.97452 0.81003
0.86008 1.20279 0.78590 0.87313 0.83468 1.90747 1.50510 1.15303
1.83877 1.48503 1.67813 1.09142 1.08978 1.22284 1.01073 0.80196
0.99461 1.22657 1.01052 0.99638 0.92440 1.22581 0.99681 0.93371
0.96867 0.89576 1.20542 0.95647 0.92838 0.87276 1.42297 1.62604
1.28938 1.03680 1.19174 1.27431 1.07963 0.82689 0.91202 1.24744
1.00547 0.97660 0.97950 1.69645 1.38882 1.15345 1.34335 0.86255
0.77451 0.76934 0.85463 1.21250 1.21671 1.21238 1.22315 0.99837
0.96941 0.81838 1.48271 1.19896 1.24644 1.21299 1.22428 0.99795
0.90411 0.94360 1.21470 0.99312 1.06369 1.03653 1.23891 0.99088
0.93815 0.97075 1.77385 1.02236 1.24496 1.07577 0.90711 0.89982
0.89178 0.91226 0.91127 0.89252 0.90069 0.95999 0.95921 0.78226
0.93420 0.90302 0.90905 0.81273 0.83502 0.79981
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.05 8.82 37.16 0.33 -0.72 16
2 C 0.15 1.52 3.30 -69.09 -0.23 1.29 16
3 H 0.12 1.12 7.18 -51.93 -0.37 0.75 16
4 C 0.52 6.98 7.04 -10.99 -0.08 6.91 16
5 O -0.53 -9.15 16.61 5.55 0.09 -9.06 16
6 N -0.61 -7.68 3.33 -170.51 -0.57 -8.25 16
7 C 0.09 0.95 6.12 -3.06 -0.02 0.93 16
8 C -0.12 -1.54 6.37 -24.89 -0.16 -1.70 16
9 C -0.11 -1.60 3.05 -88.47 -0.27 -1.87 16
10 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16
11 C 0.17 3.13 5.71 -4.04 -0.02 3.11 16
12 N -0.73 -17.83 5.55 -59.91 -0.33 -18.17 16
13 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16
14 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16
15 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16
16 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16
17 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16
18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
21 C 0.11 1.56 6.40 -2.53 -0.02 1.54 16
22 N -0.36 -4.36 3.25 -55.99 -0.18 -4.54 16
23 C 0.08 0.80 10.27 -17.22 -0.18 0.62 16
24 C -0.28 -2.80 10.80 -40.01 -0.43 -3.23 16
25 C 0.05 0.53 12.03 -17.36 -0.21 0.32 16
26 N -0.30 -4.02 12.58 30.62 0.39 -3.64 16
27 H 0.07 0.50 7.15 -51.93 -0.37 0.13 16
28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16
29 H 0.09 0.49 7.79 -51.93 -0.40 0.08 16
30 H 0.07 0.53 7.79 -51.93 -0.40 0.13 16
31 H 0.07 0.67 7.91 -51.93 -0.41 0.26 16
32 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16
33 H 0.08 1.04 7.91 -51.93 -0.41 0.63 16
34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
35 H 0.02 0.43 7.97 -51.93 -0.41 0.01 16
36 H 0.38 9.79 7.67 -40.82 -0.31 9.48 16
37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
38 H 0.08 1.19 7.99 -51.93 -0.41 0.77 16
39 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16
40 H 0.17 1.33 7.26 -52.49 -0.38 0.94 16
41 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16
42 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16
LS Contribution 350.14 15.07 5.28 5.28
Total: -1.00 -34.78 350.14 -7.55 -42.34
By element:
Atomic # 1 Polarization: 12.40 SS G_CDS: -6.40 Total: 6.00 kcal
Atomic # 6 Polarization: 1.49 SS G_CDS: -1.53 Total: -0.04 kcal
Atomic # 7 Polarization: -61.65 SS G_CDS: 0.03 Total: -61.63 kcal
Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal
Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal
Total LS contribution 5.28 Total: 5.28 kcal
Total: -34.78 -7.55 -42.34 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001752930564.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.793 kcal
(2) G-P(sol) polarization free energy of solvation -34.784 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.009 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.337 kcal
(6) G-S(sol) free energy of system = (1) + (5) 62.456 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds