Wall clock time and date at job start Tue Mar 31 2020 03:17:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09007 * 109.46481 * 2 1
4 4 C 1.50697 * 109.47407 * 240.00589 * 2 1 3
5 5 O 1.21284 * 119.99843 * 267.04130 * 4 2 1
6 6 N 1.34774 * 120.00389 * 87.03584 * 4 2 1
7 7 C 1.47031 * 125.64786 * 4.79383 * 6 4 2
8 8 C 1.54330 * 107.26567 * 178.85130 * 7 6 4
9 9 C 1.55158 * 103.02219 * 338.13753 * 8 7 6
10 10 H 1.08999 * 111.00901 * 277.23890 * 9 8 7
11 11 C 1.53000 * 111.03625 * 153.39631 * 9 8 7
12 12 N 1.46500 * 109.47171 * 72.78792 * 11 9 8
13 13 C 1.36935 * 119.99924 * 180.02562 * 12 11 9
14 14 H 1.07991 * 120.00152 * 359.97438 * 13 12 11
15 15 C 1.38820 * 119.99487 * 180.02562 * 13 12 11
16 16 N 1.31617 * 120.00130 * 359.97438 * 15 13 12
17 17 Si 1.86805 * 119.99589 * 179.97438 * 15 13 12
18 18 H 1.48507 * 109.46905 * 60.00068 * 17 15 13
19 19 H 1.48493 * 109.46992 * 179.97438 * 17 15 13
20 20 H 1.48494 * 109.47087 * 300.00037 * 17 15 13
21 21 C 1.47422 * 125.65223 * 185.10567 * 6 4 2
22 22 N 1.46496 * 109.47202 * 119.99801 * 2 1 3
23 23 C 1.34950 * 126.03409 * 35.00708 * 22 2 1
24 24 C 1.35318 * 107.74567 * 179.76505 * 23 22 2
25 25 C 1.39872 * 107.91914 * 0.22734 * 24 23 22
26 26 N 1.30839 * 108.20008 * 0.02562 * 25 24 23
27 27 H 1.09004 * 109.46881 * 180.10699 * 1 2 3
28 28 H 1.08996 * 109.47311 * 300.10890 * 1 2 3
29 29 H 1.09005 * 109.47117 * 60.11298 * 1 2 3
30 30 H 1.08999 * 109.87979 * 298.40065 * 7 6 4
31 31 H 1.09000 * 109.88019 * 59.55966 * 7 6 4
32 32 H 1.09004 * 110.84607 * 219.67138 * 8 7 6
33 33 H 1.08996 * 110.67149 * 96.52467 * 8 7 6
34 34 H 1.08994 * 109.46999 * 192.79093 * 11 9 8
35 35 H 1.09007 * 109.47060 * 312.79089 * 11 9 8
36 36 H 0.96999 * 120.00037 * 359.97438 * 12 11 9
37 37 H 0.97005 * 119.99689 * 179.97438 * 16 15 13
38 38 H 1.09004 * 110.36574 * 322.93025 * 21 6 4
39 39 H 1.08992 * 110.36940 * 85.25213 * 21 6 4
40 40 H 1.07995 * 126.12833 * 0.03391 * 23 22 2
41 41 H 1.07996 * 126.04147 * 180.24359 * 24 23 22
42 42 H 1.07998 * 125.89954 * 179.97438 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0278 0.0000
4 6 2.0324 -0.7103 -1.2305
5 8 2.2857 -1.8955 -1.1856
6 7 2.2002 -0.0285 -2.3809
7 6 2.0281 1.4219 -2.5503
8 6 2.3524 1.7527 -4.0225
9 6 3.2295 0.5520 -4.4656
10 1 4.2678 0.6949 -4.1661
11 6 3.1237 0.3219 -5.9745
12 7 3.8496 1.3797 -6.6819
13 6 3.8937 1.3824 -8.0505
14 1 3.3938 0.6046 -8.6084
15 6 4.5821 2.3845 -8.7207
16 7 5.1918 3.3321 -8.0407
17 14 4.6428 2.3878 -10.5878
18 1 3.2623 2.4778 -11.1277
19 1 5.4337 3.5545 -11.0551
20 1 5.2801 1.1342 -11.0645
21 6 2.5803 -0.6142 -3.6792
22 7 2.0184 -0.6905 1.1962
23 6 1.4402 -1.7559 1.7894
24 6 2.1993 -2.0959 2.8568
25 6 3.2754 -1.2046 2.9210
26 7 3.1659 -0.3596 1.9281
27 1 -0.3633 -1.0277 0.0019
28 1 -0.3634 0.5155 0.8890
29 1 -0.3633 0.5121 -0.8910
30 1 0.9996 1.7021 -2.3232
31 1 2.7139 1.9558 -1.8925
32 1 2.9105 2.6861 -4.0964
33 1 1.4394 1.8030 -4.6157
34 1 3.5567 -0.6464 -6.2256
35 1 2.0752 0.3393 -6.2721
36 1 4.2984 2.0785 -6.1808
37 1 5.6731 4.0321 -8.5090
38 1 3.2989 -1.4212 -3.5355
39 1 1.6976 -0.9801 -4.2034
40 1 0.5364 -2.2514 1.4672
41 1 2.0082 -2.9114 3.5385
42 1 4.0605 -1.2121 3.6626
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001752930564.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:17:08
Heat of formation + Delta-G solvation = 38.774229 kcal
Electronic energy + Delta-G solvation = -23036.482849 eV
Core-core repulsion = 19631.875106 eV
Total energy + Delta-G solvation = -3404.607744 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-42.32746 -41.10792 -38.98146 -36.49021 -35.62388 -33.92039 -31.96880 -31.04097
-30.54089 -30.18649 -27.44300 -25.84304 -24.40821 -23.92556 -22.14288 -21.87339
-21.43456 -20.20731 -19.17032 -18.58772 -18.29714 -17.30014 -16.58256 -16.54389
-16.04254 -15.48314 -15.40850 -15.14540 -14.94201 -14.83313 -14.46776 -14.22199
-14.02835 -13.86942 -13.68885 -13.40757 -13.28093 -13.01419 -13.00489 -12.74516
-12.67962 -12.27594 -12.13745 -11.82323 -11.70709 -11.67788 -11.64666 -11.28834
-10.92432 -10.40804 -9.82263 -9.53779 -9.00249 -7.95360 -5.23978 0.80766
1.20752 1.48072 1.49233 1.50730 1.56847 1.93623 1.97383 2.56127
3.14395 3.38364 3.47697 3.56242 3.60022 3.74913 3.83890 3.96574
4.11939 4.22534 4.25242 4.39334 4.49736 4.54086 4.57378 4.59540
4.69304 4.74332 4.77878 4.85681 4.95493 5.01980 5.04580 5.14883
5.17998 5.22573 5.36955 5.49933 5.72137 6.03366 6.26589 6.31433
6.72800 6.85744 7.33883 8.08641 8.32459 9.27842
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.041048 B = 0.002626 C = 0.002614
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 681.958751 B =10662.040488 C =10708.397093
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.149 3.851
3 H 0.133 0.867
4 C 0.515 3.485
5 O -0.575 6.575
6 N -0.609 5.609
7 C 0.097 3.903
8 C -0.115 4.115
9 C -0.099 4.099
10 H 0.069 0.931
11 C 0.166 3.834
12 N -0.742 5.742
13 C -0.247 4.247
14 H 0.075 0.925
15 C -0.074 4.074
16 N -0.968 5.968
17 Si 0.972 3.028
18 H -0.276 1.276
19 H -0.296 1.296
20 H -0.281 1.281
21 C 0.120 3.880
22 N -0.371 5.371
23 C 0.067 3.933
24 C -0.285 4.285
25 C 0.042 3.958
26 N -0.342 5.342
27 H 0.073 0.927
28 H 0.098 0.902
29 H 0.108 0.892
30 H 0.109 0.891
31 H 0.081 0.919
32 H 0.080 0.920
33 H 0.085 0.915
34 H 0.016 0.984
35 H 0.033 0.967
36 H 0.375 0.625
37 H 0.252 0.748
38 H 0.060 0.940
39 H 0.084 0.916
40 H 0.193 0.807
41 H 0.171 0.829
42 H 0.208 0.792
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.285 -6.067 21.576 26.054
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C 0.043 3.957
3 H 0.150 0.850
4 C 0.302 3.698
5 O -0.454 6.454
6 N -0.342 5.342
7 C -0.024 4.024
8 C -0.153 4.153
9 C -0.119 4.119
10 H 0.087 0.913
11 C 0.039 3.961
12 N -0.385 5.385
13 C -0.378 4.378
14 H 0.093 0.907
15 C -0.266 4.266
16 N -0.619 5.619
17 Si 0.801 3.199
18 H -0.202 1.202
19 H -0.222 1.222
20 H -0.207 1.207
21 C -0.003 4.003
22 N -0.153 5.153
23 C -0.079 4.079
24 C -0.314 4.314
25 C -0.144 4.144
26 N -0.163 5.163
27 H 0.092 0.908
28 H 0.117 0.883
29 H 0.126 0.874
30 H 0.127 0.873
31 H 0.099 0.901
32 H 0.099 0.901
33 H 0.103 0.897
34 H 0.034 0.966
35 H 0.051 0.949
36 H 0.208 0.792
37 H 0.060 0.940
38 H 0.079 0.921
39 H 0.102 0.898
40 H 0.210 0.790
41 H 0.189 0.811
42 H 0.224 0.776
Dipole moment (debyes) X Y Z Total
from point charges -12.748 -5.712 20.801 25.056
hybrid contribution 0.543 -0.464 -0.745 1.032
sum -12.205 -6.176 20.056 24.276
Atomic orbital electron populations
1.22145 0.87249 1.05032 1.06425 1.21266 0.98515 0.97045 0.78906
0.84957 1.20939 0.77693 0.86922 0.84239 1.90718 1.52623 1.17401
1.84649 1.48552 1.67213 1.10079 1.08375 1.22405 1.03743 0.78670
0.97605 1.22600 1.00381 0.97995 0.94345 1.22353 0.99534 0.95525
0.94444 0.91268 1.20648 0.95173 0.90929 0.89378 1.42479 1.63046
1.29882 1.03111 1.19583 1.26440 1.07580 0.84242 0.90685 1.25546
1.00996 0.97759 1.02311 1.69797 1.40166 1.16107 1.35800 0.85229
0.77647 0.76647 0.80341 1.20173 1.22185 1.20680 1.22123 0.99733
0.95778 0.82688 1.48474 1.19819 1.25358 1.21680 1.22957 1.00552
0.90039 0.94327 1.21867 0.98819 1.06731 1.03975 1.24446 0.99817
0.93301 0.96861 1.77311 1.03683 1.26306 1.09030 0.90752 0.88305
0.87391 0.87327 0.90073 0.90145 0.89664 0.96613 0.94886 0.79243
0.93970 0.92111 0.89759 0.79029 0.81127 0.77562
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.54 8.82 71.98 0.63 -0.91 16
2 C 0.15 2.77 3.30 44.25 0.15 2.92 16
3 H 0.13 2.13 7.18 -2.38 -0.02 2.11 16
4 C 0.51 13.29 7.04 87.66 0.62 13.91 16
5 O -0.57 -19.85 16.61 -3.04 -0.05 -19.90 16
6 N -0.61 -14.43 3.33 -811.76 -2.70 -17.13 16
7 C 0.10 1.74 6.12 86.73 0.53 2.27 16
8 C -0.12 -2.80 6.37 31.79 0.20 -2.59 16
9 C -0.10 -2.98 3.05 -9.40 -0.03 -3.01 16
10 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16
11 C 0.17 6.27 5.71 86.38 0.49 6.76 16
12 N -0.74 -36.50 5.55 -343.45 -1.91 -38.41 16
13 C -0.25 -13.53 9.99 84.04 0.84 -12.69 16
14 H 0.08 3.95 7.83 -2.92 -0.02 3.93 16
15 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16
16 N -0.97 -58.30 13.06 21.65 0.28 -58.02 16
17 Si 0.97 45.51 29.55 68.60 2.03 47.54 16
18 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16
19 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16
20 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16
21 C 0.12 3.25 6.40 86.86 0.56 3.80 16
22 N -0.37 -8.55 3.25 -331.07 -1.08 -9.63 16
23 C 0.07 1.30 10.27 83.54 0.86 2.16 16
24 C -0.29 -5.27 10.80 21.99 0.24 -5.03 16
25 C 0.04 0.87 12.03 85.24 1.03 1.90 16
26 N -0.34 -9.08 12.58 -57.02 -0.72 -9.80 16
27 H 0.07 0.79 7.15 -2.38 -0.02 0.78 16
28 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16
29 H 0.11 0.73 7.79 -2.38 -0.02 0.71 16
30 H 0.11 1.19 7.79 -2.39 -0.02 1.17 16
31 H 0.08 1.34 7.91 -2.39 -0.02 1.32 16
32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16
33 H 0.08 2.02 7.91 -2.39 -0.02 2.00 16
34 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16
35 H 0.03 1.21 7.97 -2.38 -0.02 1.19 16
36 H 0.38 19.53 7.67 -92.71 -0.71 18.81 16
37 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16
38 H 0.06 1.87 7.99 -2.39 -0.02 1.85 16
39 H 0.08 2.10 8.04 -2.39 -0.02 2.08 16
40 H 0.19 2.62 7.26 -2.91 -0.02 2.59 16
41 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16
42 H 0.21 2.86 8.06 -2.91 -0.02 2.84 16
Total: -1.00 -76.07 350.14 2.74 -73.33
By element:
Atomic # 1 Polarization: 25.93 SS G_CDS: 0.30 Total: 26.24 kcal
Atomic # 6 Polarization: -0.80 SS G_CDS: 6.58 Total: 5.78 kcal
Atomic # 7 Polarization: -126.87 SS G_CDS: -6.12 Total: -132.98 kcal
Atomic # 8 Polarization: -19.85 SS G_CDS: -0.05 Total: -19.90 kcal
Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal
Total: -76.07 2.74 -73.33 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001752930564.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 112.102 kcal
(2) G-P(sol) polarization free energy of solvation -76.071 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.031 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.328 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.774 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds