Wall clock time and date at job start Tue Mar 31 2020 03:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36597 * 127.18008 * 2 1 4 4 S 1.76202 * 126.37903 * 0.02562 * 3 2 1 5 5 C 1.80999 * 99.99942 * 180.31278 * 4 3 2 6 6 C 1.50699 * 109.47286 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99894 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00344 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99707 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00254 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47193 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46776 * 120.00381 * 10 8 6 13 13 H 1.48496 * 109.47253 * 240.00481 * 10 8 6 14 14 N 1.31413 * 107.23730 * 180.29700 * 3 2 1 15 15 N 1.28505 * 110.08340 * 359.73730 * 14 3 2 16 16 C 1.31276 * 109.96866 * 359.97438 * 15 14 3 17 17 C 1.47810 * 126.46761 * 180.02562 * 16 15 14 18 18 C 1.39578 * 120.15634 * 133.16460 * 17 16 15 19 19 C 1.37939 * 119.87998 * 179.97438 * 18 17 16 20 20 C 1.38386 * 120.19615 * 359.97438 * 19 18 17 21 21 C 1.38293 * 120.31946 * 359.74432 * 20 19 18 22 22 C 1.38220 * 120.11561 * 0.51561 * 21 20 19 23 23 F 1.35100 * 120.09799 * 179.76735 * 22 21 20 24 24 H 1.09006 * 109.46874 * 265.09191 * 1 2 3 25 25 H 1.08999 * 109.47166 * 25.08975 * 1 2 3 26 26 H 1.08994 * 109.47392 * 145.09273 * 1 2 3 27 27 H 1.08997 * 109.47458 * 300.00176 * 5 4 3 28 28 H 1.09000 * 109.47172 * 60.00463 * 5 4 3 29 29 H 0.96993 * 119.99902 * 179.97438 * 9 8 6 30 30 H 1.08007 * 120.05960 * 359.97438 * 18 17 16 31 31 H 1.08002 * 119.90009 * 179.97438 * 19 18 17 32 32 H 1.07998 * 119.84103 * 179.97438 * 20 19 18 33 33 H 1.08000 * 119.93979 * 180.27544 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0883 0.0000 4 16 1.7918 2.7783 0.0006 5 6 3.4124 3.5842 -0.0095 6 6 3.2296 5.0801 -0.0097 7 1 2.2357 5.5026 -0.0039 8 6 4.3312 5.9093 -0.0163 9 7 5.5415 5.3947 -0.0228 10 14 4.1046 7.7635 -0.0173 11 1 2.6547 8.0850 -0.0097 12 1 4.7457 8.3411 1.1913 13 1 4.7331 8.3383 -1.2337 14 7 3.5258 0.6401 -0.0065 15 7 3.5290 -0.6449 -0.0050 16 6 2.2963 -1.0963 0.0031 17 6 1.8800 -2.5145 0.0079 18 6 0.8957 -2.9534 0.8947 19 6 0.5112 -4.2781 0.8939 20 6 1.0981 -5.1727 0.0163 21 6 2.0700 -4.7455 -0.8699 22 6 2.4691 -3.4222 -0.8767 23 9 3.4220 -3.0063 -1.7393 24 1 -0.3633 -0.0879 1.0240 25 1 -0.3633 0.9307 -0.4358 26 1 -0.3634 -0.8427 -0.5880 27 1 3.9716 3.2871 0.8777 28 1 3.9616 3.2848 -0.9022 29 1 6.3165 5.9780 -0.0278 30 1 0.4358 -2.2570 1.5804 31 1 -0.2502 -4.6182 1.5803 32 1 0.7930 -6.2087 0.0208 33 1 2.5208 -5.4480 -1.5553 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003441202.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:37 Heat of formation + Delta-G solvation = 52.647873 kcal Electronic energy + Delta-G solvation = -19889.574120 eV Core-core repulsion = 16571.308792 eV Total energy + Delta-G solvation = -3318.265328 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.94476 -42.43766 -39.11205 -34.83837 -33.19985 -32.57277 -30.94248 -29.30891 -28.48909 -27.53280 -24.03347 -23.15785 -23.06712 -22.00213 -20.84481 -18.05190 -17.52782 -16.70101 -16.57501 -16.07564 -16.03638 -15.66065 -15.45912 -14.81713 -14.64653 -14.14667 -13.43045 -13.40363 -13.20514 -12.94526 -12.64053 -12.43945 -12.37691 -12.23012 -11.55655 -11.27837 -10.95340 -10.85041 -10.60249 -10.22418 -10.04648 -9.92528 -9.67288 -9.27764 -9.22896 -8.86079 -8.59959 -6.92168 -6.20966 -4.29813 0.55875 0.85194 1.73545 1.96312 2.76984 3.05642 3.23659 3.29911 3.31544 3.33716 3.44349 3.95042 4.08534 4.31698 4.41874 4.54212 4.63813 4.84717 4.91915 4.99164 5.15267 5.27779 5.35106 5.46677 5.65951 5.76887 5.80349 5.97545 6.00517 6.21741 6.48149 6.87368 7.09852 7.21283 7.66103 7.90902 8.71062 8.96160 9.33902 10.89371 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.038070 B = 0.003327 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.315883 B = 8414.351581 C = 8925.310751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.467 5.467 3 C 0.187 3.813 4 S -0.051 6.051 5 C 0.078 3.922 6 C -0.527 4.527 7 H 0.068 0.932 8 C 0.071 3.929 9 N -0.880 5.880 10 Si 0.908 3.092 11 H -0.270 1.270 12 H -0.280 1.280 13 H -0.280 1.280 14 N -0.287 5.287 15 N -0.255 5.255 16 C 0.184 3.816 17 C -0.037 4.037 18 C -0.073 4.073 19 C -0.130 4.130 20 C -0.082 4.082 21 C -0.155 4.155 22 C 0.138 3.862 23 F -0.121 7.121 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.087 0.913 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.267 0.733 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.030 -19.840 0.687 24.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.162 5.162 3 C -0.186 4.186 4 S 0.178 5.822 5 C -0.069 4.069 6 C -0.567 4.567 7 H 0.086 0.914 8 C -0.135 4.135 9 N -0.516 5.516 10 Si 0.735 3.265 11 H -0.194 1.194 12 H -0.206 1.206 13 H -0.206 1.206 14 N -0.132 5.132 15 N -0.097 5.097 16 C -0.083 4.083 17 C -0.041 4.041 18 C -0.093 4.093 19 C -0.148 4.148 20 C -0.100 4.100 21 C -0.174 4.174 22 C 0.117 3.883 23 F -0.099 7.099 24 H 0.100 0.900 25 H 0.116 0.884 26 H 0.106 0.894 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.370 -19.233 0.639 23.433 hybrid contribution 0.028 0.470 -0.132 0.488 sum -13.343 -18.763 0.507 23.029 Atomic orbital electron populations 1.22101 0.75447 1.05343 1.03863 1.46377 1.08282 1.04748 1.56806 1.27550 0.89505 0.96810 1.04712 1.85420 1.21345 0.84429 1.90965 1.21375 0.85792 0.97037 1.02701 1.20609 0.93611 0.88201 1.54319 0.91399 1.24950 0.94681 0.99487 0.94362 1.69995 0.97823 1.35741 1.48079 0.86280 0.78528 0.83840 0.77878 1.19424 1.20611 1.20605 1.74886 1.15691 1.01916 1.20676 1.74379 1.16197 1.03682 1.15392 1.22432 0.87454 0.88365 1.10022 1.17492 0.99881 0.87652 0.99068 1.21144 0.95168 0.96542 0.96470 1.21095 1.01083 0.92660 1.00002 1.21137 0.94714 1.00175 0.94001 1.21131 1.00305 0.93771 1.02176 1.17695 0.88725 0.92448 0.89427 1.91588 1.60752 1.90739 1.66843 0.90012 0.88374 0.89420 0.92761 0.92781 0.92274 0.84936 0.84737 0.84628 0.84073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 10.02 59.85 0.60 1.41 16 2 N -0.47 -7.82 3.24 -121.46 -0.39 -8.21 16 3 C 0.19 3.92 8.07 -88.17 -0.71 3.21 16 4 S -0.05 -1.08 21.62 -107.50 -2.32 -3.40 16 5 C 0.08 2.07 4.99 36.01 0.18 2.25 16 6 C -0.53 -14.54 9.13 -34.44 -0.31 -14.85 16 7 H 0.07 1.81 7.71 -52.48 -0.40 1.40 16 8 C 0.07 1.97 5.46 -17.82 -0.10 1.88 16 9 N -0.88 -25.90 13.29 55.43 0.74 -25.16 16 10 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 14 N -0.29 -6.87 11.59 30.71 0.36 -6.52 16 15 N -0.26 -5.62 12.02 32.59 0.39 -5.22 16 16 C 0.18 3.25 7.15 -153.76 -1.10 2.15 16 17 C -0.04 -0.50 5.64 -104.92 -0.59 -1.09 16 18 C -0.07 -0.70 9.06 -39.19 -0.36 -1.05 16 19 C -0.13 -0.90 10.03 -39.64 -0.40 -1.30 16 20 C -0.08 -0.55 10.04 -39.51 -0.40 -0.95 16 21 C -0.15 -1.39 10.01 -39.57 -0.40 -1.78 16 22 C 0.14 1.79 7.28 -39.02 -0.28 1.51 16 23 F -0.12 -1.92 16.66 2.25 0.04 -1.88 16 24 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 25 H 0.10 1.03 7.71 -51.93 -0.40 0.63 16 26 H 0.09 0.74 7.98 -51.93 -0.41 0.32 16 27 H 0.05 1.55 8.14 -51.92 -0.42 1.13 16 28 H 0.05 1.55 8.14 -51.92 -0.42 1.13 16 29 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.13 1.08 7.64 -52.48 -0.40 0.68 16 31 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 32 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 33 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 314.01 15.07 4.73 4.73 Total: -1.00 -34.04 314.01 -8.64 -42.67 By element: Atomic # 1 Polarization: -1.07 SS G_CDS: -3.29 Total: -4.36 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -3.86 Total: -8.62 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 1.09 Total: -45.11 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.08 SS G_CDS: -2.32 Total: -3.40 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.04 -8.64 -42.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003441202.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.323 kcal (2) G-P(sol) polarization free energy of solvation -34.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds