Wall clock time and date at job start Tue Mar 31 2020 03:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36597 * 127.18008 * 2 1 4 4 S 1.76202 * 126.37903 * 0.02562 * 3 2 1 5 5 C 1.80999 * 99.99942 * 180.31278 * 4 3 2 6 6 C 1.50699 * 109.47286 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99894 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00344 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99707 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00254 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47193 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46776 * 120.00381 * 10 8 6 13 13 H 1.48496 * 109.47253 * 240.00481 * 10 8 6 14 14 N 1.31413 * 107.23730 * 180.29700 * 3 2 1 15 15 N 1.28505 * 110.08340 * 359.73730 * 14 3 2 16 16 C 1.31276 * 109.96866 * 359.97438 * 15 14 3 17 17 C 1.47810 * 126.46761 * 180.02562 * 16 15 14 18 18 C 1.39578 * 120.15634 * 133.16460 * 17 16 15 19 19 C 1.37939 * 119.87998 * 179.97438 * 18 17 16 20 20 C 1.38386 * 120.19615 * 359.97438 * 19 18 17 21 21 C 1.38293 * 120.31946 * 359.74432 * 20 19 18 22 22 C 1.38220 * 120.11561 * 0.51561 * 21 20 19 23 23 F 1.35100 * 120.09799 * 179.76735 * 22 21 20 24 24 H 1.09006 * 109.46874 * 265.09191 * 1 2 3 25 25 H 1.08999 * 109.47166 * 25.08975 * 1 2 3 26 26 H 1.08994 * 109.47392 * 145.09273 * 1 2 3 27 27 H 1.08997 * 109.47458 * 300.00176 * 5 4 3 28 28 H 1.09000 * 109.47172 * 60.00463 * 5 4 3 29 29 H 0.96993 * 119.99902 * 179.97438 * 9 8 6 30 30 H 1.08007 * 120.05960 * 359.97438 * 18 17 16 31 31 H 1.08002 * 119.90009 * 179.97438 * 19 18 17 32 32 H 1.07998 * 119.84103 * 179.97438 * 20 19 18 33 33 H 1.08000 * 119.93979 * 180.27544 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0883 0.0000 4 16 1.7918 2.7783 0.0006 5 6 3.4124 3.5842 -0.0095 6 6 3.2296 5.0801 -0.0097 7 1 2.2357 5.5026 -0.0039 8 6 4.3312 5.9093 -0.0163 9 7 5.5415 5.3947 -0.0228 10 14 4.1046 7.7635 -0.0173 11 1 2.6547 8.0850 -0.0097 12 1 4.7457 8.3411 1.1913 13 1 4.7331 8.3383 -1.2337 14 7 3.5258 0.6401 -0.0065 15 7 3.5290 -0.6449 -0.0050 16 6 2.2963 -1.0963 0.0031 17 6 1.8800 -2.5145 0.0079 18 6 0.8957 -2.9534 0.8947 19 6 0.5112 -4.2781 0.8939 20 6 1.0981 -5.1727 0.0163 21 6 2.0700 -4.7455 -0.8699 22 6 2.4691 -3.4222 -0.8767 23 9 3.4220 -3.0063 -1.7393 24 1 -0.3633 -0.0879 1.0240 25 1 -0.3633 0.9307 -0.4358 26 1 -0.3634 -0.8427 -0.5880 27 1 3.9716 3.2871 0.8777 28 1 3.9616 3.2848 -0.9022 29 1 6.3165 5.9780 -0.0278 30 1 0.4358 -2.2570 1.5804 31 1 -0.2502 -4.6182 1.5803 32 1 0.7930 -6.2087 0.0208 33 1 2.5208 -5.4480 -1.5553 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003441202.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:37 Heat of formation + Delta-G solvation = 31.960888 kcal Electronic energy + Delta-G solvation = -19890.471175 eV Core-core repulsion = 16571.308792 eV Total energy + Delta-G solvation = -3319.162383 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.98861 -43.90998 -39.85903 -36.16293 -35.33137 -33.61168 -31.68091 -30.94953 -30.24881 -28.62226 -25.52256 -24.64257 -24.17838 -23.29441 -21.99801 -19.31749 -18.72441 -18.28270 -17.74263 -17.50825 -17.20786 -16.83374 -16.64725 -16.52208 -15.54173 -15.11820 -14.88299 -14.63528 -14.41343 -14.37068 -14.24248 -13.91976 -13.40049 -13.05215 -12.84723 -12.77949 -12.65269 -12.41854 -12.21091 -11.81090 -11.63305 -11.46960 -11.24477 -11.18789 -10.76568 -10.05484 -9.75776 -8.62037 -8.33971 -6.52774 -0.31985 0.12062 0.15276 0.62082 1.33934 1.41769 1.43154 1.54679 1.58921 1.64401 2.36054 2.53854 3.00576 3.01307 3.16427 3.56346 3.73090 3.92924 4.08724 4.21892 4.26607 4.29398 4.47239 4.52111 4.73790 4.79700 4.85371 4.99013 4.99522 5.08966 5.24441 5.35116 5.50810 5.62723 5.76249 5.82194 6.56882 7.17285 7.43500 8.78631 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.038070 B = 0.003327 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.315883 B = 8414.351581 C = 8925.310751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.457 5.457 3 C 0.161 3.839 4 S 0.009 5.991 5 C 0.076 3.924 6 C -0.544 4.544 7 H 0.079 0.921 8 C 0.013 3.987 9 N -0.924 5.924 10 Si 0.986 3.014 11 H -0.254 1.254 12 H -0.274 1.274 13 H -0.275 1.275 14 N -0.340 5.340 15 N -0.314 5.314 16 C 0.214 3.786 17 C -0.076 4.076 18 C -0.068 4.068 19 C -0.113 4.113 20 C -0.060 4.060 21 C -0.152 4.152 22 C 0.102 3.898 23 F -0.152 7.152 24 H 0.114 0.886 25 H 0.101 0.899 26 H 0.117 0.883 27 H 0.018 0.982 28 H 0.016 0.984 29 H 0.271 0.729 30 H 0.148 0.852 31 H 0.177 0.823 32 H 0.180 0.820 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.966 -21.870 1.574 28.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.151 5.151 3 C -0.214 4.214 4 S 0.238 5.762 5 C -0.072 4.072 6 C -0.583 4.583 7 H 0.097 0.903 8 C -0.188 4.188 9 N -0.562 5.562 10 Si 0.808 3.192 11 H -0.177 1.177 12 H -0.199 1.199 13 H -0.200 1.200 14 N -0.184 5.184 15 N -0.154 5.154 16 C -0.055 4.055 17 C -0.079 4.079 18 C -0.088 4.088 19 C -0.131 4.131 20 C -0.079 4.079 21 C -0.170 4.170 22 C 0.081 3.919 23 F -0.131 7.131 24 H 0.132 0.868 25 H 0.120 0.880 26 H 0.135 0.865 27 H 0.036 0.964 28 H 0.034 0.966 29 H 0.080 0.920 30 H 0.165 0.835 31 H 0.195 0.805 32 H 0.197 0.803 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -17.348 -21.292 1.527 27.507 hybrid contribution 1.108 0.742 -0.379 1.386 sum -16.240 -20.550 1.147 26.218 Atomic orbital electron populations 1.22649 0.71746 1.06903 1.06629 1.46667 1.10201 1.03053 1.55146 1.27418 0.89955 0.97636 1.06430 1.84691 1.15882 0.83951 1.91649 1.20935 0.89146 0.97983 0.99178 1.20994 0.94311 0.88753 1.54243 0.90285 1.26071 0.94119 1.05254 0.93395 1.70151 0.98991 1.37977 1.49084 0.85091 0.79297 0.76717 0.78067 1.17737 1.19922 1.20019 1.74740 1.18034 1.03436 1.22227 1.74256 1.19193 1.03013 1.18969 1.23232 0.86423 0.90328 1.05486 1.17702 1.02848 0.85268 1.02102 1.21389 0.93656 0.98328 0.95393 1.21604 1.00742 0.91065 0.99661 1.21717 0.92293 1.02173 0.91673 1.21454 1.00605 0.92052 1.02919 1.18227 0.89266 0.94240 0.90126 1.91507 1.62255 1.91282 1.68033 0.86813 0.88031 0.86451 0.96370 0.96598 0.91989 0.83467 0.80526 0.80277 0.82235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.16 10.02 127.77 1.28 2.44 16 2 N -0.46 -15.33 3.24 -538.19 -1.74 -17.07 16 3 C 0.16 7.05 8.07 179.49 1.45 8.50 16 4 S 0.01 0.40 21.62 -56.49 -1.22 -0.82 16 5 C 0.08 4.30 4.99 71.24 0.36 4.66 16 6 C -0.54 -30.94 9.13 25.60 0.23 -30.71 16 7 H 0.08 4.22 7.71 -2.91 -0.02 4.19 16 8 C 0.01 0.75 5.46 84.65 0.46 1.22 16 9 N -0.92 -56.94 13.29 21.45 0.28 -56.66 16 10 Si 0.99 43.46 29.54 68.60 2.03 45.49 16 11 H -0.25 -10.45 7.11 99.48 0.71 -9.75 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 14 N -0.34 -17.58 11.59 -56.75 -0.66 -18.24 16 15 N -0.31 -14.82 12.02 -50.81 -0.61 -15.43 16 16 C 0.21 7.76 7.15 136.19 0.97 8.73 16 17 C -0.08 -1.96 5.64 -20.05 -0.11 -2.07 16 18 C -0.07 -1.05 9.06 22.52 0.20 -0.85 16 19 C -0.11 -0.91 10.03 22.23 0.22 -0.69 16 20 C -0.06 -0.48 10.04 22.32 0.22 -0.25 16 21 C -0.15 -2.29 10.01 22.28 0.22 -2.07 16 22 C 0.10 2.62 7.28 22.63 0.16 2.78 16 23 F -0.15 -5.15 16.66 44.97 0.75 -4.40 16 24 H 0.11 1.49 8.07 -2.38 -0.02 1.47 16 25 H 0.10 1.91 7.71 -2.39 -0.02 1.89 16 26 H 0.12 1.58 7.98 -2.39 -0.02 1.56 16 27 H 0.02 1.12 8.14 -2.40 -0.02 1.10 16 28 H 0.02 0.98 8.14 -2.40 -0.02 0.97 16 29 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 30 H 0.15 1.79 7.64 -2.91 -0.02 1.77 16 31 H 0.18 0.08 8.06 -2.91 -0.02 0.06 16 32 H 0.18 -0.02 8.06 -2.91 -0.02 -0.04 16 33 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -83.52 314.01 5.65 -77.87 By element: Atomic # 1 Polarization: -3.58 SS G_CDS: 1.14 Total: -2.44 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 5.68 Total: -8.30 kcal Atomic # 7 Polarization: -104.67 SS G_CDS: -2.72 Total: -107.40 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.75 Total: -4.40 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -1.22 Total: -0.82 kcal Total: -83.52 5.65 -77.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003441202.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.832 kcal (2) G-P(sol) polarization free energy of solvation -83.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds