Wall clock time and date at job start Tue Mar 31 2020 03:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99692 * 2 1 4 4 H 1.48495 * 109.47466 * 270.00356 * 3 2 1 5 5 H 1.48501 * 109.47144 * 30.00351 * 3 2 1 6 6 H 1.48506 * 109.47122 * 150.00286 * 3 2 1 7 7 C 1.37877 * 120.00441 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99647 * 359.97438 * 7 2 1 9 9 C 1.50691 * 120.00027 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.46887 * 180.02562 * 9 7 2 11 11 C 1.34781 * 119.99777 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00210 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99879 * 179.97438 * 11 10 9 14 14 N 1.46493 * 109.47327 * 180.02562 * 13 11 10 15 15 N 1.28723 * 125.31818 * 269.97931 * 14 13 11 16 16 N 1.28984 * 108.99473 * 180.02562 * 15 14 13 17 17 C 1.34200 * 107.24984 * 359.97438 * 16 15 14 18 18 C 1.47928 * 126.70235 * 180.02562 * 17 16 15 19 19 C 1.34726 * 125.26625 * 359.69655 * 18 17 16 20 20 C 1.37980 * 114.71444 * 179.83385 * 19 18 17 21 21 C 1.33597 * 115.05959 * 0.45469 * 20 19 18 22 22 S 1.75859 * 109.75069 * 359.75448 * 21 20 19 23 23 N 1.28867 * 125.31971 * 89.99900 * 14 13 11 24 24 H 0.96998 * 120.00095 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47295 * 60.00205 * 9 7 2 26 26 H 1.09002 * 109.47050 * 299.99668 * 9 7 2 27 27 H 0.96999 * 119.99946 * 0.02562 * 10 9 7 28 28 H 1.09007 * 109.46918 * 60.00373 * 13 11 10 29 29 H 1.09001 * 109.46977 * 300.00888 * 13 11 10 30 30 H 1.08010 * 122.64252 * 0.02562 * 19 18 17 31 31 H 1.08006 * 122.46720 * 180.19251 * 20 19 18 32 32 H 1.07998 * 125.12463 * 179.78961 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5468 1.4403 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0022 11 6 5.3251 -2.8213 -0.0034 12 8 6.1132 -1.8995 -0.0031 13 6 5.8275 -4.2421 -0.0040 14 7 7.2925 -4.2421 -0.0047 15 7 8.0361 -4.2422 -1.0554 16 7 9.2741 -4.2427 -0.6934 17 6 9.2965 -4.2423 0.6484 18 6 10.4970 -4.2421 1.5126 19 6 11.7710 -4.2481 1.0744 20 6 12.7243 -4.2429 2.0719 21 6 12.2403 -4.2423 3.3171 22 16 10.4823 -4.2415 3.2714 23 7 8.0380 -4.2423 1.0464 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6803 0.8888 26 1 3.8745 -0.6799 -0.8912 27 1 3.3697 -3.3124 -0.0029 28 1 5.4634 -4.7559 -0.8938 29 1 5.4649 -4.7561 0.8862 30 1 12.0260 -4.2533 0.0248 31 1 13.7836 -4.2437 1.8615 32 1 12.8385 -4.2417 4.2163 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061498878.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:06 Heat of formation + Delta-G solvation = 132.097191 kcal Electronic energy + Delta-G solvation = -19592.829529 eV Core-core repulsion = 16297.929344 eV Total energy + Delta-G solvation = -3294.900185 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.31920 -39.39050 -38.05824 -35.14900 -34.56141 -33.44761 -32.56411 -30.69572 -29.07256 -27.53018 -25.21891 -23.68075 -22.85490 -22.11245 -20.49528 -19.51456 -18.33778 -18.17736 -17.40138 -16.82976 -15.93674 -15.82773 -15.41010 -15.12609 -14.33099 -14.18875 -13.89856 -13.48961 -13.19607 -13.16275 -12.94713 -12.67417 -12.49617 -12.19654 -11.89499 -11.21438 -11.18520 -11.15215 -10.97444 -10.93159 -10.88021 -10.09084 -9.70305 -9.61740 -8.92414 -8.77228 -8.75527 -8.47207 -6.32453 -4.36465 0.32025 1.16425 1.20672 1.67711 1.69803 2.04733 2.68333 2.75787 3.19375 3.26340 3.34026 3.45798 3.59915 4.20945 4.23548 4.63568 4.70127 4.75818 4.84917 5.02748 5.13169 5.29833 5.32851 5.63333 5.78698 5.91100 6.02783 6.11485 6.58781 6.86146 6.88217 7.18828 7.83770 8.24765 8.25634 8.42866 8.65983 9.26030 10.79078 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.027903 B = 0.002985 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.251701 B = 9377.840009 C = 9773.699587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.080 3.920 3 Si 0.875 3.125 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.221 3.779 10 N -0.691 5.691 11 C 0.490 3.510 12 O -0.537 6.537 13 C 0.106 3.894 14 N -0.113 5.113 15 N -0.043 5.043 16 N -0.269 5.269 17 C 0.232 3.768 18 C -0.115 4.115 19 C -0.090 4.090 20 C -0.137 4.137 21 C -0.211 4.211 22 S 0.171 5.829 23 N -0.288 5.288 24 H 0.269 0.731 25 H 0.029 0.971 26 H 0.025 0.975 27 H 0.402 0.598 28 H 0.148 0.852 29 H 0.146 0.854 30 H 0.152 0.848 31 H 0.147 0.853 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.234 -12.596 5.171 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.124 4.124 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.586 4.586 8 H 0.100 0.900 9 C 0.100 3.900 10 N -0.340 5.340 11 C 0.271 3.729 12 O -0.415 6.415 13 C -0.019 4.019 14 N -0.024 5.024 15 N -0.036 5.036 16 N -0.141 5.141 17 C -0.049 4.049 18 C -0.236 4.236 19 C -0.125 4.125 20 C -0.168 4.168 21 C -0.349 4.349 22 S 0.436 5.564 23 N -0.139 5.139 24 H 0.079 0.921 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.236 0.764 28 H 0.166 0.834 29 H 0.163 0.837 30 H 0.169 0.831 31 H 0.165 0.835 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 18.991 -11.785 5.711 23.068 hybrid contribution 1.200 0.635 -0.678 1.518 sum 20.191 -11.150 5.033 23.608 Atomic orbital electron populations 1.69865 1.06190 1.27630 1.48806 1.24771 0.94798 0.99163 0.93683 0.86839 0.80540 0.83280 0.79180 1.19724 1.20707 1.18584 1.21014 0.88112 0.95397 1.54084 0.90001 1.19610 0.95566 0.77604 0.97234 1.46080 1.04505 1.11940 1.71474 1.20106 0.84340 0.89343 0.79095 1.90783 1.55342 1.45201 1.50139 1.22225 0.70682 0.99769 1.09177 1.49298 1.09509 1.42916 1.00690 1.78917 0.96088 1.14591 1.13993 1.76064 1.09749 1.18405 1.09867 1.22292 0.89752 1.03442 0.89390 1.21174 0.92041 1.14539 0.95837 1.20378 0.89977 1.00208 1.01938 1.20056 1.01106 1.04344 0.91282 1.25967 0.97811 1.09103 1.01979 1.84505 1.02365 1.70503 0.99056 1.74960 1.02273 1.21697 1.14924 0.92071 0.95305 0.95736 0.76401 0.83400 0.83664 0.83069 0.83537 0.81246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.54 13.96 55.43 0.77 -24.76 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 20.87 27.47 -169.99 -4.67 16.20 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.55 -14.24 9.83 -34.44 -0.34 -14.58 16 8 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 9 C 0.22 5.12 4.50 -5.20 -0.02 5.09 16 10 N -0.69 -12.32 5.55 -61.47 -0.34 -12.66 16 11 C 0.49 8.44 7.90 -10.98 -0.09 8.36 16 12 O -0.54 -12.02 16.43 5.56 0.09 -11.93 16 13 C 0.11 1.24 7.07 -5.20 -0.04 1.20 16 14 N -0.11 -1.73 3.48 -11.67 -0.04 -1.78 16 15 N -0.04 -0.71 13.23 60.35 0.80 0.09 16 16 N -0.27 -4.43 12.51 32.08 0.40 -4.03 16 17 C 0.23 3.61 8.16 -156.25 -1.28 2.34 16 18 C -0.12 -1.47 6.44 -36.86 -0.24 -1.71 16 19 C -0.09 -0.94 10.07 -40.92 -0.41 -1.35 16 20 C -0.14 -1.11 10.16 -41.30 -0.42 -1.53 16 21 C -0.21 -1.64 11.22 29.11 0.33 -1.31 16 22 S 0.17 1.78 23.32 -107.50 -2.51 -0.73 16 23 N -0.29 -4.60 12.18 32.10 0.39 -4.21 16 24 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 26 H 0.02 0.60 7.57 -51.93 -0.39 0.21 16 27 H 0.40 5.79 8.32 -40.82 -0.34 5.45 16 28 H 0.15 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.15 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.15 1.46 8.06 -52.48 -0.42 1.03 16 31 H 0.15 0.79 8.06 -52.48 -0.42 0.36 16 32 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 309.40 15.07 4.66 4.66 Total: -1.00 -34.78 309.40 -5.84 -40.62 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -2.80 Total: -0.09 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -2.60 Total: -1.39 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 1.98 Total: -47.35 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.51 Total: -0.73 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.78 -5.84 -40.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061498878.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.716 kcal (2) G-P(sol) polarization free energy of solvation -34.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds