Wall clock time and date at job start Tue Mar 31 2020 03:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99692 * 2 1 4 4 H 1.48495 * 109.47466 * 270.00356 * 3 2 1 5 5 H 1.48501 * 109.47144 * 30.00351 * 3 2 1 6 6 H 1.48506 * 109.47122 * 150.00286 * 3 2 1 7 7 C 1.37877 * 120.00441 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99647 * 359.97438 * 7 2 1 9 9 C 1.50691 * 120.00027 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.46887 * 180.02562 * 9 7 2 11 11 C 1.34781 * 119.99777 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00210 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99879 * 179.97438 * 11 10 9 14 14 N 1.46493 * 109.47327 * 180.02562 * 13 11 10 15 15 N 1.28723 * 125.31818 * 269.97931 * 14 13 11 16 16 N 1.28984 * 108.99473 * 180.02562 * 15 14 13 17 17 C 1.34200 * 107.24984 * 359.97438 * 16 15 14 18 18 C 1.47928 * 126.70235 * 180.02562 * 17 16 15 19 19 C 1.34726 * 125.26625 * 359.69655 * 18 17 16 20 20 C 1.37980 * 114.71444 * 179.83385 * 19 18 17 21 21 C 1.33597 * 115.05959 * 0.45469 * 20 19 18 22 22 S 1.75859 * 109.75069 * 359.75448 * 21 20 19 23 23 N 1.28867 * 125.31971 * 89.99900 * 14 13 11 24 24 H 0.96998 * 120.00095 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47295 * 60.00205 * 9 7 2 26 26 H 1.09002 * 109.47050 * 299.99668 * 9 7 2 27 27 H 0.96999 * 119.99946 * 0.02562 * 10 9 7 28 28 H 1.09007 * 109.46918 * 60.00373 * 13 11 10 29 29 H 1.09001 * 109.46977 * 300.00888 * 13 11 10 30 30 H 1.08010 * 122.64252 * 0.02562 * 19 18 17 31 31 H 1.08006 * 122.46720 * 180.19251 * 20 19 18 32 32 H 1.07998 * 125.12463 * 179.78961 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5468 1.4403 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0022 11 6 5.3251 -2.8213 -0.0034 12 8 6.1132 -1.8995 -0.0031 13 6 5.8275 -4.2421 -0.0040 14 7 7.2925 -4.2421 -0.0047 15 7 8.0361 -4.2422 -1.0554 16 7 9.2741 -4.2427 -0.6934 17 6 9.2965 -4.2423 0.6484 18 6 10.4970 -4.2421 1.5126 19 6 11.7710 -4.2481 1.0744 20 6 12.7243 -4.2429 2.0719 21 6 12.2403 -4.2423 3.3171 22 16 10.4823 -4.2415 3.2714 23 7 8.0380 -4.2423 1.0464 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6803 0.8888 26 1 3.8745 -0.6799 -0.8912 27 1 3.3697 -3.3124 -0.0029 28 1 5.4634 -4.7559 -0.8938 29 1 5.4649 -4.7561 0.8862 30 1 12.0260 -4.2533 0.0248 31 1 13.7836 -4.2437 1.8615 32 1 12.8385 -4.2417 4.2163 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061498878.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:06 Heat of formation + Delta-G solvation = 105.554053 kcal Electronic energy + Delta-G solvation = -19593.980526 eV Core-core repulsion = 16297.929344 eV Total energy + Delta-G solvation = -3296.051182 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.45563 -40.85801 -38.80256 -36.50829 -36.06105 -34.57322 -34.50709 -31.78963 -30.34887 -29.01029 -26.10597 -25.06890 -23.84277 -23.70427 -21.95676 -20.38026 -19.67922 -19.13155 -18.60328 -18.40024 -17.38758 -16.88314 -16.80194 -16.47076 -15.91774 -15.30988 -14.98952 -14.90890 -14.53582 -14.42348 -14.18210 -13.75219 -13.62440 -13.38030 -13.14532 -12.92978 -12.76140 -12.42112 -12.26065 -12.01898 -11.98872 -11.75079 -11.69151 -11.13222 -10.95680 -10.15163 -9.60716 -9.50956 -8.42863 -6.49715 -0.52561 0.01639 0.41811 0.66415 0.98889 1.12407 1.28676 1.33200 1.34455 1.43676 1.91017 2.14319 2.24592 2.59471 2.92805 3.18501 3.50863 3.77736 3.89541 4.14733 4.27795 4.42364 4.56477 4.66658 4.69230 4.87345 4.94771 5.10088 5.19612 5.27227 5.30107 5.44142 6.01291 6.48418 6.59683 7.04168 7.08603 7.20985 8.71396 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.027903 B = 0.002985 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.251701 B = 9377.840009 C = 9773.699587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.030 3.970 3 Si 0.930 3.070 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.232 3.768 10 N -0.685 5.685 11 C 0.493 3.507 12 O -0.592 6.592 13 C 0.110 3.890 14 N -0.114 5.114 15 N -0.058 5.058 16 N -0.289 5.289 17 C 0.231 3.769 18 C -0.162 4.162 19 C -0.078 4.078 20 C -0.144 4.144 21 C -0.184 4.184 22 S 0.149 5.851 23 N -0.305 5.305 24 H 0.273 0.727 25 H 0.014 0.986 26 H 0.013 0.987 27 H 0.420 0.580 28 H 0.194 0.806 29 H 0.188 0.812 30 H 0.154 0.846 31 H 0.180 0.820 32 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.260 -13.503 5.949 26.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.171 4.171 3 Si 0.755 3.245 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.087 0.913 9 C 0.108 3.892 10 N -0.335 5.335 11 C 0.277 3.723 12 O -0.473 6.473 13 C -0.012 4.012 14 N -0.026 5.026 15 N -0.051 5.051 16 N -0.161 5.161 17 C -0.049 4.049 18 C -0.282 4.282 19 C -0.114 4.114 20 C -0.173 4.173 21 C -0.321 4.321 22 S 0.413 5.587 23 N -0.156 5.156 24 H 0.082 0.918 25 H 0.032 0.968 26 H 0.031 0.969 27 H 0.258 0.742 28 H 0.211 0.789 29 H 0.205 0.795 30 H 0.172 0.828 31 H 0.198 0.802 32 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 21.002 -12.737 6.482 25.403 hybrid contribution 0.662 0.855 -0.872 1.389 sum 21.664 -11.882 5.611 25.337 Atomic orbital electron populations 1.69958 1.07525 1.28600 1.50502 1.25507 0.95451 1.02353 0.93739 0.85966 0.79216 0.80000 0.79339 1.19184 1.19847 1.18849 1.21242 0.89531 0.94851 1.52608 0.91296 1.19163 0.93680 0.80418 0.95920 1.45782 1.05577 1.10524 1.71640 1.20886 0.83223 0.91244 0.76952 1.90764 1.56530 1.47673 1.52288 1.22573 0.69157 0.95928 1.13514 1.49573 1.10355 1.42416 1.00292 1.78825 0.96464 1.15133 1.14660 1.76009 1.09960 1.19462 1.10653 1.22814 0.90565 1.02172 0.89371 1.21357 0.91927 1.18212 0.96712 1.20687 0.89797 0.98052 1.02854 1.20359 1.02233 1.04112 0.90598 1.26418 0.96051 1.06322 1.03286 1.84531 1.05256 1.71052 0.97869 1.74938 1.02682 1.22675 1.15276 0.91800 0.96836 0.96920 0.74249 0.78934 0.79453 0.82842 0.80241 0.77741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.68 13.96 21.45 0.30 -53.38 16 2 C 0.03 1.66 5.47 84.65 0.46 2.13 16 3 Si 0.93 43.17 27.47 68.60 1.88 45.05 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.26 -12.26 6.54 99.48 0.65 -11.61 16 7 C -0.54 -28.31 9.83 25.60 0.25 -28.06 16 8 H 0.07 3.69 7.84 -2.91 -0.02 3.66 16 9 C 0.23 10.68 4.50 85.63 0.38 11.06 16 10 N -0.68 -23.66 5.55 -466.79 -2.59 -26.25 16 11 C 0.49 16.42 7.90 87.66 0.69 17.11 16 12 O -0.59 -26.55 16.43 -3.02 -0.05 -26.60 16 13 C 0.11 2.32 7.07 85.64 0.61 2.93 16 14 N -0.11 -3.39 3.48 -190.84 -0.66 -4.05 16 15 N -0.06 -1.89 13.23 37.02 0.49 -1.40 16 16 N -0.29 -9.59 12.51 -52.40 -0.66 -10.24 16 17 C 0.23 7.21 8.16 137.12 1.12 8.33 16 18 C -0.16 -4.05 6.44 24.03 0.15 -3.90 16 19 C -0.08 -1.52 10.07 21.40 0.22 -1.31 16 20 C -0.14 -1.87 10.16 21.16 0.21 -1.66 16 21 C -0.18 -2.26 11.22 66.77 0.75 -1.51 16 22 S 0.15 2.92 23.32 -56.49 -1.32 1.60 16 23 N -0.30 -9.63 12.18 -52.35 -0.64 -10.26 16 24 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 25 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 26 H 0.01 0.63 7.57 -2.39 -0.02 0.61 16 27 H 0.42 11.35 8.32 -92.71 -0.77 10.57 16 28 H 0.19 2.31 8.14 -2.38 -0.02 2.29 16 29 H 0.19 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 31 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 32 H 0.21 1.03 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -77.79 309.40 1.97 -75.82 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: 0.36 Total: 4.59 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 4.85 Total: 5.12 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -3.76 Total: -105.59 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.05 Total: -26.60 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.88 Total: 45.05 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.32 Total: 1.60 kcal Total: -77.79 1.97 -75.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061498878.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.377 kcal (2) G-P(sol) polarization free energy of solvation -77.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds