Wall clock time and date at job start Tue Mar 31 2020 02:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 111.00494 * 2 1 4 4 C 1.46907 * 110.99651 * 123.95698 * 2 1 3 5 5 C 1.52993 * 109.47481 * 66.04641 * 4 2 1 6 6 C 1.52998 * 109.47283 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.47227 * 179.97438 * 6 5 4 8 8 C 1.46500 * 119.99928 * 270.00121 * 7 6 5 9 9 C 1.50702 * 109.46961 * 262.77790 * 8 7 6 10 10 H 1.07997 * 119.99980 * 0.02562 * 9 8 7 11 11 C 1.37872 * 119.99959 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00311 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 120.00103 * 0.02562 * 11 9 8 14 14 H 1.48507 * 109.47195 * 89.99742 * 13 11 9 15 15 H 1.48493 * 109.47236 * 209.99631 * 13 11 9 16 16 H 1.48501 * 109.46861 * 329.99991 * 13 11 9 17 17 C 1.34778 * 119.99835 * 89.99784 * 7 6 5 18 18 O 1.21521 * 119.99683 * 3.06591 * 17 7 6 19 19 C 1.48148 * 119.99738 * 183.05692 * 17 7 6 20 20 C 1.39443 * 120.09249 * 173.20466 * 19 17 7 21 21 N 1.32086 * 119.86978 * 179.97438 * 20 19 17 22 22 C 1.32125 * 120.07220 * 359.97438 * 21 20 19 23 23 C 1.38738 * 120.19854 * 0.27915 * 22 21 20 24 24 N 1.31802 * 120.12321 * 359.42856 * 23 22 21 25 25 H 1.08993 * 109.47522 * 296.04977 * 1 2 3 26 26 H 1.09003 * 109.46715 * 56.04966 * 1 2 3 27 27 H 1.09001 * 109.47308 * 176.03842 * 1 2 3 28 28 H 1.08999 * 109.47257 * 183.95016 * 3 2 1 29 29 H 1.08997 * 109.46822 * 303.95360 * 3 2 1 30 30 H 1.08996 * 109.46951 * 63.95043 * 3 2 1 31 31 H 1.08994 * 109.46838 * 306.04104 * 4 2 1 32 32 H 1.09006 * 109.46517 * 186.04612 * 4 2 1 33 33 H 1.08997 * 109.47336 * 59.99381 * 5 4 2 34 34 H 1.09011 * 109.46992 * 299.99963 * 5 4 2 35 35 H 1.09003 * 109.46913 * 59.99741 * 6 5 4 36 36 H 1.08994 * 109.46902 * 299.99696 * 6 5 4 37 37 H 1.08994 * 109.47375 * 22.78118 * 8 7 6 38 38 H 1.08997 * 109.47055 * 142.77837 * 8 7 6 39 39 H 0.97000 * 120.00123 * 180.02562 * 12 11 9 40 40 H 1.08001 * 120.06272 * 359.95506 * 20 19 17 41 41 H 1.08000 * 119.90289 * 179.97438 * 22 21 20 42 42 H 1.07999 * 119.93749 * 179.69972 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7661 1.1376 5 6 1.6314 -2.2427 0.9704 6 6 2.1791 -3.0404 2.1555 7 7 1.8300 -4.4542 1.9956 8 6 0.5729 -4.9653 2.5477 9 6 0.8352 -5.6021 3.8882 10 1 1.8378 -5.6236 4.2889 11 6 -0.2051 -6.1564 4.6034 12 7 0.0236 -6.7118 5.7734 13 14 -1.9395 -6.1187 3.9106 14 1 -2.1750 -7.3397 3.0988 15 1 -2.9175 -6.0702 5.0269 16 1 -2.1046 -4.9161 3.0551 17 6 2.6653 -5.2846 1.3406 18 8 3.7332 -4.8736 0.9312 19 6 2.2818 -6.6985 1.1198 20 6 3.0758 -7.5220 0.3225 21 7 2.7300 -8.7820 0.1290 22 6 1.6340 -9.2614 0.6901 23 6 0.8390 -8.4432 1.4796 24 7 1.1799 -7.1863 1.6826 25 1 -0.3634 0.4513 0.9232 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3634 -1.0252 -0.0710 28 1 3.0828 1.3431 -0.0708 29 1 1.5899 1.9163 -0.8524 30 1 1.7045 1.8723 0.9232 31 1 1.5610 -0.3873 2.0628 32 1 3.0797 -0.6612 1.1756 33 1 2.0656 -2.6214 0.0452 34 1 0.5470 -2.3475 0.9323 35 1 1.7443 -2.6615 3.0805 36 1 3.2633 -2.9356 2.1940 37 1 -0.1321 -4.1429 2.6679 38 1 0.1531 -5.7074 1.8688 39 1 -0.7082 -7.1020 6.2764 40 1 3.9717 -7.1303 -0.1361 41 1 1.3536 -10.2919 0.5298 42 1 -0.0585 -8.8381 1.9323 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064361891.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:30 Heat of formation + Delta-G solvation = 42.756303 kcal Electronic energy + Delta-G solvation = -23799.961666 eV Core-core repulsion = 20395.526598 eV Total energy + Delta-G solvation = -3404.435068 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.84265 -38.92371 -37.62825 -35.48104 -33.98256 -32.71795 -31.75705 -30.99689 -27.98687 -27.65300 -26.43818 -24.68691 -24.07371 -22.60478 -22.39490 -20.76426 -19.30984 -17.39167 -16.98989 -16.67697 -16.42606 -15.79335 -15.52651 -15.11802 -14.99061 -14.65996 -14.44682 -14.08667 -13.84157 -13.64787 -13.16239 -12.61362 -12.49754 -12.41198 -12.35181 -12.15646 -11.87004 -11.72925 -11.42664 -11.25386 -10.96369 -10.90423 -10.81241 -10.39332 -10.21414 -10.19972 -9.75670 -9.49822 -9.08481 -8.64523 -8.42056 -8.32400 -7.77817 -6.11377 -4.05786 0.80852 1.47738 3.20338 3.24678 3.29154 3.30425 3.54729 3.95476 4.23034 4.35200 4.43802 4.57235 4.81704 5.00597 5.07661 5.10706 5.22758 5.23940 5.31376 5.44505 5.48933 5.53624 5.58303 5.58767 5.71876 5.73408 5.80291 5.83823 5.91255 6.05186 6.34445 6.46902 6.52068 6.60557 6.96244 6.98747 7.04508 7.35651 7.54484 7.58629 8.00502 8.11716 8.45677 8.73976 8.92616 9.49675 11.02030 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012539 B = 0.005547 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.556609 B = 5046.445085 C = 6492.217893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.058 3.942 5 C -0.130 4.130 6 C 0.118 3.882 7 N -0.567 5.567 8 C 0.199 3.801 9 C -0.500 4.500 10 H 0.070 0.930 11 C 0.077 3.923 12 N -0.900 5.900 13 Si 0.872 3.128 14 H -0.274 1.274 15 H -0.289 1.289 16 H -0.267 1.267 17 C 0.573 3.427 18 O -0.559 6.559 19 C 0.036 3.964 20 C 0.096 3.904 21 N -0.453 5.453 22 C 0.058 3.942 23 C 0.039 3.961 24 N -0.347 5.347 25 H 0.025 0.975 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.024 0.976 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.023 0.977 38 H 0.070 0.930 39 H 0.263 0.737 40 H 0.175 0.825 41 H 0.167 0.833 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.533 6.051 -10.538 12.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.070 4.070 5 C -0.168 4.168 6 C -0.006 4.006 7 N -0.295 5.295 8 C 0.078 3.922 9 C -0.539 4.539 10 H 0.088 0.912 11 C -0.125 4.125 12 N -0.539 5.539 13 Si 0.700 3.300 14 H -0.200 1.200 15 H -0.215 1.215 16 H -0.192 1.192 17 C 0.359 3.641 18 O -0.439 6.439 19 C -0.105 4.105 20 C -0.064 4.064 21 N -0.167 5.167 22 C -0.102 4.102 23 C -0.122 4.122 24 N -0.064 5.064 25 H 0.044 0.956 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.041 0.959 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.192 0.808 41 H 0.184 0.816 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.084 5.988 -11.012 12.535 hybrid contribution -1.449 0.174 0.835 1.681 sum -1.365 6.161 -10.177 11.975 Atomic orbital electron populations 1.22441 0.87488 1.02658 1.00165 1.61970 1.08040 1.13522 1.43707 1.22367 1.00793 0.88953 1.00223 1.22074 1.00269 0.93665 0.90970 1.21958 1.01469 0.93509 0.99913 1.21348 1.01170 0.80397 0.97670 1.47870 1.22034 1.07905 1.51660 1.20456 0.80642 0.94943 0.96165 1.21159 0.96477 1.36126 1.00141 0.91205 1.24730 0.98457 0.94742 0.94531 1.69905 1.32230 1.38755 1.12990 0.86929 0.85097 0.79157 0.78820 1.19954 1.21531 1.19215 1.17630 0.83790 0.83938 0.78694 1.90704 1.23045 1.76636 1.53531 1.22219 0.94105 0.96732 0.97457 1.23667 0.99069 0.89146 0.94506 1.68528 1.15073 1.13177 1.19941 1.23944 0.91203 1.01367 0.93716 1.24054 1.00980 0.90844 0.96290 1.69445 1.12302 1.12423 1.12271 0.95630 0.91722 0.90878 0.91356 0.91609 0.95790 0.94569 0.90529 0.90899 0.91791 0.90142 0.90299 0.95923 0.91304 0.92709 0.80811 0.81589 0.81462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.32 60.06 0.56 0.79 16 2 N -0.55 -6.69 5.02 -251.26 -1.26 -7.95 16 3 C 0.03 0.24 9.57 60.07 0.57 0.82 16 4 C 0.06 0.75 4.96 -3.82 -0.02 0.73 16 5 C -0.13 -1.94 5.46 -26.74 -0.15 -2.08 16 6 C 0.12 2.05 5.40 -4.04 -0.02 2.03 16 7 N -0.57 -11.65 2.48 -176.06 -0.44 -12.09 16 8 C 0.20 4.44 3.84 -5.19 -0.02 4.42 16 9 C -0.50 -13.13 8.51 -34.44 -0.29 -13.42 16 10 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 11 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 12 N -0.90 -26.09 13.96 55.43 0.77 -25.32 16 13 Si 0.87 19.91 27.47 -169.99 -4.67 15.24 16 14 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.27 -5.85 6.54 56.52 0.37 -5.48 16 17 C 0.57 12.00 7.59 -12.19 -0.09 11.91 16 18 O -0.56 -12.09 15.93 5.35 0.09 -12.00 16 19 C 0.04 0.70 6.61 -82.84 -0.55 0.16 16 20 C 0.10 1.66 10.77 -16.99 -0.18 1.48 16 21 N -0.45 -7.34 10.49 -12.71 -0.13 -7.47 16 22 C 0.06 0.84 11.23 -17.24 -0.19 0.64 16 23 C 0.04 0.66 11.22 -17.38 -0.20 0.46 16 24 N -0.35 -7.00 5.18 -9.61 -0.05 -7.05 16 25 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 27 H 0.07 0.86 6.47 -51.93 -0.34 0.52 16 28 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 29 H 0.07 0.57 8.12 -51.93 -0.42 0.14 16 30 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 0.97 6.55 -51.92 -0.34 0.63 16 35 H 0.08 1.37 8.07 -51.93 -0.42 0.96 16 36 H 0.08 1.38 7.38 -51.93 -0.38 1.00 16 37 H 0.02 0.50 7.07 -51.93 -0.37 0.14 16 38 H 0.07 1.54 4.69 -52.01 -0.24 1.30 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.17 2.74 7.66 -52.49 -0.40 2.33 16 41 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.17 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 346.59 15.07 5.22 5.22 Total: -1.00 -31.18 346.59 -7.44 -38.62 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.30 Total: 2.90 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -0.67 Total: 9.89 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -1.11 Total: -59.88 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -12.00 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.67 Total: 15.24 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.18 -7.44 -38.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064361891.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.379 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds