Wall clock time and date at job start Tue Mar 31 2020 02:52:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.36884 * 126.40137 * 2 1
4 4 C 1.34662 * 106.81772 * 180.24866 * 3 2 1
5 5 N 1.34128 * 108.02262 * 359.74312 * 4 3 2
6 6 C 1.30497 * 109.25602 * 359.97438 * 5 4 3
7 7 C 1.50701 * 125.65084 * 179.97438 * 6 5 4
8 8 N 1.46906 * 109.46965 * 90.02661 * 7 6 5
9 9 C 1.46961 * 110.99734 * 293.80177 * 8 7 6
10 10 C 1.53049 * 109.36292 * 176.81247 * 9 8 7
11 11 N 1.46955 * 109.36716 * 58.39846 * 10 9 8
12 12 C 1.46896 * 111.00246 * 176.81294 * 11 10 9
13 13 C 1.52995 * 109.47037 * 293.79849 * 12 11 10
14 14 C 1.53006 * 109.47275 * 179.97438 * 13 12 11
15 15 C 1.50697 * 109.47070 * 180.02562 * 14 13 12
16 16 H 1.08000 * 120.00285 * 359.97438 * 15 14 13
17 17 C 1.37880 * 119.99784 * 180.02562 * 15 14 13
18 18 N 1.31513 * 120.00059 * 359.97438 * 17 15 14
19 19 Si 1.86804 * 119.99987 * 179.97438 * 17 15 14
20 20 H 1.48504 * 109.46795 * 0.02562 * 19 17 15
21 21 H 1.48502 * 109.47040 * 119.99564 * 19 17 15
22 22 H 1.48492 * 109.47397 * 239.99705 * 19 17 15
23 23 C 1.46961 * 110.88206 * 300.68030 * 11 10 9
24 24 C 1.46952 * 110.99889 * 170.00017 * 8 7 6
25 25 H 1.09001 * 109.46997 * 270.19250 * 1 2 3
26 26 H 1.09003 * 109.46786 * 30.18946 * 1 2 3
27 27 H 1.08993 * 109.47083 * 150.18720 * 1 2 3
28 28 H 1.08000 * 126.58998 * 359.97199 * 3 2 1
29 29 H 1.08008 * 125.98870 * 179.75822 * 4 3 2
30 30 H 1.08993 * 109.47133 * 330.02699 * 7 6 5
31 31 H 1.08996 * 109.47320 * 210.02439 * 7 6 5
32 32 H 1.09003 * 109.48904 * 296.77641 * 9 8 7
33 33 H 1.09002 * 109.49205 * 56.84173 * 9 8 7
34 34 H 1.09008 * 109.48964 * 298.43140 * 10 9 8
35 35 H 1.09002 * 109.50883 * 178.37660 * 10 9 8
36 36 H 1.09004 * 109.47192 * 53.79854 * 12 11 10
37 37 H 1.08996 * 109.47259 * 173.79971 * 12 11 10
38 38 H 1.08995 * 109.47700 * 299.99895 * 13 12 11
39 39 H 1.09005 * 109.47043 * 60.00154 * 13 12 11
40 40 H 1.09001 * 109.46740 * 300.00173 * 14 13 12
41 41 H 1.09005 * 109.46795 * 60.00204 * 14 13 12
42 42 H 0.97003 * 120.00283 * 180.02562 * 18 17 15
43 43 H 1.09003 * 109.48904 * 299.35325 * 23 11 10
44 44 H 1.08989 * 109.49349 * 179.28524 * 23 11 10
45 45 H 1.08999 * 109.49234 * 303.15264 * 24 8 7
46 46 H 1.08996 * 109.49284 * 63.22180 * 24 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2774 1.1018 0.0000
4 6 3.5461 0.6504 -0.0056
5 7 3.5096 -0.6904 -0.0032
6 6 2.2664 -1.0870 0.0042
7 6 1.8018 -2.5206 0.0085
8 7 1.6580 -2.9846 1.3950
9 6 2.9625 -3.0410 2.0694
10 6 2.7612 -3.4510 3.5302
11 7 2.0880 -4.7563 3.5816
12 6 1.9442 -5.2201 4.9680
13 6 3.3274 -5.5043 5.5567
14 6 3.1777 -5.9869 7.0010
15 6 4.5402 -6.2662 7.5810
16 1 5.4245 -6.1151 6.9797
17 6 4.6579 -6.7157 8.8792
18 7 3.5811 -6.9002 9.6113
19 14 6.3468 -7.0626 9.5981
20 1 7.3872 -6.7769 8.5777
21 1 6.5670 -6.1970 10.7845
22 1 6.4288 -8.4887 10.0037
23 6 0.7835 -4.6998 2.9072
24 6 0.9848 -4.2898 1.4464
25 1 -0.3633 0.0035 1.0277
26 1 -0.3633 0.8883 -0.5168
27 1 -0.3633 -0.8916 -0.5109
28 1 1.9614 2.1345 -0.0004
29 1 4.4369 1.2610 -0.0108
30 1 2.5337 -3.1413 -0.5082
31 1 0.8405 -2.5926 -0.5002
32 1 3.5983 -3.7725 1.5707
33 1 3.4356 -2.0598 2.0289
34 1 2.1478 -2.7052 4.0360
35 1 3.7297 -3.5216 4.0252
36 1 1.4488 -4.4500 5.5593
37 1 1.3474 -6.1320 4.9859
38 1 3.8228 -6.2744 4.9655
39 1 3.9243 -4.5924 5.5388
40 1 2.6825 -5.2164 7.5920
41 1 2.5807 -6.8988 7.0193
42 1 3.6638 -7.2161 10.5247
43 1 0.1476 -3.9683 3.4059
44 1 0.3104 -5.6809 2.9476
45 1 0.0161 -4.2192 0.9518
46 1 1.5981 -5.0355 0.9406
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000069442886.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:52:17
Heat of formation + Delta-G solvation = 69.144974 kcal
Electronic energy + Delta-G solvation = -23316.206937 eV
Core-core repulsion = 20048.749262 eV
Total energy + Delta-G solvation = -3267.457675 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 292.196 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-42.28318 -39.21262 -36.06096 -34.23625 -33.58062 -31.75587 -30.79960 -30.34146
-27.96877 -27.19763 -25.85380 -24.10689 -23.53774 -22.09749 -21.55253 -19.95451
-19.89950 -19.60787 -17.30038 -16.66993 -16.19466 -15.54809 -15.34890 -14.95053
-14.83207 -14.51227 -14.44948 -14.24228 -13.98189 -13.74207 -13.41410 -13.10523
-13.06760 -12.69516 -12.36907 -12.19479 -12.07664 -11.59677 -11.25071 -11.17940
-11.00874 -10.80077 -10.74654 -10.43637 -10.35184 -10.13409 -9.78333 -9.54745
-9.27729 -8.99421 -8.70901 -8.45719 -8.30110 -8.00731 -5.95378 -3.96983
1.79501 2.55423 2.90956 3.34716 3.41940 3.47058 3.81887 4.17411
4.26586 4.38377 4.50721 4.51416 4.72944 4.87947 4.90438 5.06804
5.14686 5.20609 5.25268 5.31253 5.40587 5.42813 5.51144 5.55760
5.62456 5.79828 5.83195 5.96291 6.01118 6.06366 6.14895 6.19079
6.37765 6.56057 6.73237 6.76502 6.83530 6.88421 6.98858 7.18322
7.41438 7.45486 7.74071 7.89009 7.93051 8.05620 8.49427 9.10589
9.66895 11.16187
Molecular weight = 292.20amu
Principal moments of inertia in cm(-1)
A = 0.024687 B = 0.002681 C = 0.002527
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1133.915180 B =10439.643406 C =11076.194070
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.075 3.925
2 N -0.451 5.451
3 C -0.061 4.061
4 C -0.027 4.027
5 N -0.487 5.487
6 C 0.217 3.783
7 C 0.138 3.862
8 N -0.538 5.538
9 C 0.061 3.939
10 C 0.057 3.943
11 N -0.540 5.540
12 C 0.057 3.943
13 C -0.105 4.105
14 C 0.022 3.978
15 C -0.516 4.516
16 H 0.056 0.944
17 C 0.055 3.945
18 N -0.897 5.897
19 Si 0.891 3.109
20 H -0.272 1.272
21 H -0.285 1.285
22 H -0.284 1.284
23 C 0.057 3.943
24 C 0.060 3.940
25 H 0.080 0.920
26 H 0.082 0.918
27 H 0.085 0.915
28 H 0.173 0.827
29 H 0.169 0.831
30 H 0.068 0.932
31 H 0.086 0.914
32 H 0.045 0.955
33 H 0.085 0.915
34 H 0.035 0.965
35 H 0.087 0.913
36 H 0.028 0.972
37 H 0.069 0.931
38 H 0.055 0.945
39 H 0.046 0.954
40 H 0.013 0.987
41 H 0.015 0.985
42 H 0.259 0.741
43 H 0.037 0.963
44 H 0.079 0.921
45 H 0.075 0.925
46 H 0.046 0.954
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.787 14.131 -22.798 28.552
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 N -0.133 5.133
3 C -0.194 4.194
4 C -0.176 4.176
5 N -0.206 5.206
6 C -0.045 4.045
7 C 0.009 3.991
8 N -0.264 5.264
9 C -0.067 4.067
10 C -0.071 4.071
11 N -0.265 5.265
12 C -0.069 4.069
13 C -0.142 4.142
14 C -0.016 4.016
15 C -0.555 4.555
16 H 0.074 0.926
17 C -0.146 4.146
18 N -0.537 5.537
19 Si 0.719 3.281
20 H -0.197 1.197
21 H -0.211 1.211
22 H -0.210 1.210
23 C -0.071 4.071
24 C -0.068 4.068
25 H 0.099 0.901
26 H 0.101 0.899
27 H 0.104 0.896
28 H 0.190 0.810
29 H 0.186 0.814
30 H 0.086 0.914
31 H 0.104 0.896
32 H 0.064 0.936
33 H 0.103 0.897
34 H 0.053 0.947
35 H 0.105 0.895
36 H 0.046 0.954
37 H 0.087 0.913
38 H 0.074 0.926
39 H 0.065 0.935
40 H 0.031 0.969
41 H 0.034 0.966
42 H 0.069 0.931
43 H 0.055 0.945
44 H 0.097 0.903
45 H 0.094 0.906
46 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -9.333 13.555 -22.638 27.988
hybrid contribution 0.087 0.549 0.603 0.820
sum -9.246 14.104 -22.036 27.748
Atomic orbital electron populations
1.22014 0.76649 1.04121 1.03978 1.45225 1.07611 1.06551 1.53947
1.22685 0.91428 0.92486 1.12809 1.22297 0.96424 0.91178 1.07692
1.70265 1.18475 1.12086 1.19760 1.22987 0.85670 0.90542 1.05325
1.20286 1.00807 0.87020 0.90972 1.62168 1.22759 1.27833 1.13661
1.22227 0.88892 1.01588 0.94017 1.22185 1.00122 0.89418 0.95415
1.62246 1.19816 1.26764 1.17686 1.22268 0.99937 0.98956 0.85788
1.21649 0.93501 1.00341 0.98755 1.19077 0.97053 0.96176 0.89282
1.21304 0.92973 1.43717 0.97459 0.92615 1.25032 0.96556 0.95736
0.97248 1.69978 1.27899 1.46895 1.08939 0.86549 0.84642 0.77839
0.79071 1.19690 1.21077 1.21040 1.22105 0.91212 1.00522 0.93284
1.22163 0.98441 0.88889 0.97303 0.90144 0.89905 0.89618 0.81013
0.81376 0.91444 0.89593 0.93632 0.89691 0.94663 0.89458 0.95363
0.91264 0.92631 0.93483 0.96868 0.96645 0.93141 0.94484 0.90303
0.90648 0.93582
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.39 10.97 59.85 0.66 1.05 16
2 N -0.45 -4.11 3.15 -121.28 -0.38 -4.49 16
3 C -0.06 -0.54 11.58 -16.56 -0.19 -0.73 16
4 C -0.03 -0.30 11.87 -17.81 -0.21 -0.51 16
5 N -0.49 -6.42 10.42 -10.81 -0.11 -6.53 16
6 C 0.22 2.45 6.55 -155.41 -1.02 1.43 16
7 C 0.14 1.35 5.27 -4.97 -0.03 1.32 16
8 N -0.54 -6.13 4.70 -235.91 -1.11 -7.24 16
9 C 0.06 0.82 5.44 -3.77 -0.02 0.80 16
10 C 0.06 0.87 5.41 -3.77 -0.02 0.85 16
11 N -0.54 -8.47 4.71 -234.47 -1.10 -9.57 16
12 C 0.06 1.04 4.96 -3.83 -0.02 1.02 16
13 C -0.10 -2.25 5.09 -26.73 -0.14 -2.39 16
14 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16
15 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16
16 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16
17 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16
18 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16
19 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16
20 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16
21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16
22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16
23 C 0.06 0.73 5.61 -3.76 -0.02 0.70 16
24 C 0.06 0.63 5.61 -3.77 -0.02 0.61 16
25 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16
26 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16
27 H 0.09 0.34 7.04 -51.93 -0.37 -0.02 16
28 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16
29 H 0.17 1.44 8.06 -52.48 -0.42 1.02 16
30 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16
31 H 0.09 0.61 6.94 -51.93 -0.36 0.25 16
32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16
33 H 0.08 1.24 6.57 -51.93 -0.34 0.90 16
34 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16
35 H 0.09 1.43 6.34 -51.93 -0.33 1.10 16
36 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16
37 H 0.07 1.23 8.03 -51.93 -0.42 0.81 16
38 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16
39 H 0.05 1.01 6.49 -51.93 -0.34 0.67 16
40 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16
41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16
42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16
43 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16
44 H 0.08 0.93 8.07 -51.94 -0.42 0.51 16
45 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16
46 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16
LS Contribution 364.25 15.07 5.49 5.49
Total: -1.00 -33.79 364.25 -11.10 -44.89
By element:
Atomic # 1 Polarization: 4.36 SS G_CDS: -8.02 Total: -3.66 kcal
Atomic # 6 Polarization: -7.66 SS G_CDS: -1.58 Total: -9.23 kcal
Atomic # 7 Polarization: -52.65 SS G_CDS: -1.97 Total: -54.62 kcal
Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal
Total LS contribution 5.49 Total: 5.49 kcal
Total: -33.79 -11.10 -44.89 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000069442886.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 114.036 kcal
(2) G-P(sol) polarization free energy of solvation -33.786 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.250 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.105 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.891 kcal
(6) G-S(sol) free energy of system = (1) + (5) 69.145 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds