Wall clock time and date at job start Tue Mar 31 2020 02:52:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.36884 * 126.40137 * 2 1
4 4 C 1.34662 * 106.81772 * 180.24866 * 3 2 1
5 5 N 1.34128 * 108.02262 * 359.74312 * 4 3 2
6 6 C 1.30497 * 109.25602 * 359.97438 * 5 4 3
7 7 C 1.50701 * 125.65084 * 179.97438 * 6 5 4
8 8 N 1.46906 * 109.46965 * 90.02661 * 7 6 5
9 9 C 1.46961 * 110.99734 * 293.80177 * 8 7 6
10 10 C 1.53049 * 109.36292 * 176.81247 * 9 8 7
11 11 N 1.46955 * 109.36716 * 58.39846 * 10 9 8
12 12 C 1.46896 * 111.00246 * 176.81294 * 11 10 9
13 13 C 1.52995 * 109.47037 * 293.79849 * 12 11 10
14 14 C 1.53006 * 109.47275 * 179.97438 * 13 12 11
15 15 C 1.50697 * 109.47070 * 180.02562 * 14 13 12
16 16 H 1.08000 * 120.00285 * 359.97438 * 15 14 13
17 17 C 1.37880 * 119.99784 * 180.02562 * 15 14 13
18 18 N 1.31513 * 120.00059 * 359.97438 * 17 15 14
19 19 Si 1.86804 * 119.99987 * 179.97438 * 17 15 14
20 20 H 1.48504 * 109.46795 * 0.02562 * 19 17 15
21 21 H 1.48502 * 109.47040 * 119.99564 * 19 17 15
22 22 H 1.48492 * 109.47397 * 239.99705 * 19 17 15
23 23 C 1.46961 * 110.88206 * 300.68030 * 11 10 9
24 24 C 1.46952 * 110.99889 * 170.00017 * 8 7 6
25 25 H 1.09001 * 109.46997 * 270.19250 * 1 2 3
26 26 H 1.09003 * 109.46786 * 30.18946 * 1 2 3
27 27 H 1.08993 * 109.47083 * 150.18720 * 1 2 3
28 28 H 1.08000 * 126.58998 * 359.97199 * 3 2 1
29 29 H 1.08008 * 125.98870 * 179.75822 * 4 3 2
30 30 H 1.08993 * 109.47133 * 330.02699 * 7 6 5
31 31 H 1.08996 * 109.47320 * 210.02439 * 7 6 5
32 32 H 1.09003 * 109.48904 * 296.77641 * 9 8 7
33 33 H 1.09002 * 109.49205 * 56.84173 * 9 8 7
34 34 H 1.09008 * 109.48964 * 298.43140 * 10 9 8
35 35 H 1.09002 * 109.50883 * 178.37660 * 10 9 8
36 36 H 1.09004 * 109.47192 * 53.79854 * 12 11 10
37 37 H 1.08996 * 109.47259 * 173.79971 * 12 11 10
38 38 H 1.08995 * 109.47700 * 299.99895 * 13 12 11
39 39 H 1.09005 * 109.47043 * 60.00154 * 13 12 11
40 40 H 1.09001 * 109.46740 * 300.00173 * 14 13 12
41 41 H 1.09005 * 109.46795 * 60.00204 * 14 13 12
42 42 H 0.97003 * 120.00283 * 180.02562 * 18 17 15
43 43 H 1.09003 * 109.48904 * 299.35325 * 23 11 10
44 44 H 1.08989 * 109.49349 * 179.28524 * 23 11 10
45 45 H 1.08999 * 109.49234 * 303.15264 * 24 8 7
46 46 H 1.08996 * 109.49284 * 63.22180 * 24 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2774 1.1018 0.0000
4 6 3.5461 0.6504 -0.0056
5 7 3.5096 -0.6904 -0.0032
6 6 2.2664 -1.0870 0.0042
7 6 1.8018 -2.5206 0.0085
8 7 1.6580 -2.9846 1.3950
9 6 2.9625 -3.0410 2.0694
10 6 2.7612 -3.4510 3.5302
11 7 2.0880 -4.7563 3.5816
12 6 1.9442 -5.2201 4.9680
13 6 3.3274 -5.5043 5.5567
14 6 3.1777 -5.9869 7.0010
15 6 4.5402 -6.2662 7.5810
16 1 5.4245 -6.1151 6.9797
17 6 4.6579 -6.7157 8.8792
18 7 3.5811 -6.9002 9.6113
19 14 6.3468 -7.0626 9.5981
20 1 7.3872 -6.7769 8.5777
21 1 6.5670 -6.1970 10.7845
22 1 6.4288 -8.4887 10.0037
23 6 0.7835 -4.6998 2.9072
24 6 0.9848 -4.2898 1.4464
25 1 -0.3633 0.0035 1.0277
26 1 -0.3633 0.8883 -0.5168
27 1 -0.3633 -0.8916 -0.5109
28 1 1.9614 2.1345 -0.0004
29 1 4.4369 1.2610 -0.0108
30 1 2.5337 -3.1413 -0.5082
31 1 0.8405 -2.5926 -0.5002
32 1 3.5983 -3.7725 1.5707
33 1 3.4356 -2.0598 2.0289
34 1 2.1478 -2.7052 4.0360
35 1 3.7297 -3.5216 4.0252
36 1 1.4488 -4.4500 5.5593
37 1 1.3474 -6.1320 4.9859
38 1 3.8228 -6.2744 4.9655
39 1 3.9243 -4.5924 5.5388
40 1 2.6825 -5.2164 7.5920
41 1 2.5807 -6.8988 7.0193
42 1 3.6638 -7.2161 10.5247
43 1 0.1476 -3.9683 3.4059
44 1 0.3104 -5.6809 2.9476
45 1 0.0161 -4.2192 0.9518
46 1 1.5981 -5.0355 0.9406
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000069442886.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:52:16
Heat of formation + Delta-G solvation = 46.313806 kcal
Electronic energy + Delta-G solvation = -23317.196971 eV
Core-core repulsion = 20048.749262 eV
Total energy + Delta-G solvation = -3268.447709 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 292.196 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-42.99232 -40.30541 -37.32203 -35.51740 -34.87161 -33.45032 -31.91969 -31.43103
-29.20975 -27.91289 -27.23981 -25.38395 -24.64399 -23.73372 -22.26216 -21.64101
-20.81145 -20.59228 -18.52212 -17.95582 -17.47777 -16.60211 -16.48929 -16.27666
-16.01305 -15.73947 -15.58998 -15.37898 -15.01523 -14.88649 -14.42244 -14.27876
-13.81390 -13.69767 -13.57545 -13.36436 -13.21868 -13.15194 -12.81824 -12.59525
-12.52724 -12.34388 -12.24772 -11.91025 -11.84796 -11.39673 -11.34250 -11.03900
-10.91414 -10.56075 -10.48564 -9.55450 -9.33444 -9.21306 -8.21073 -6.31869
1.09246 1.39178 1.39370 1.53328 1.97245 2.12478 2.40340 2.91854
2.98270 3.11906 3.51523 3.86299 3.88250 4.00162 4.01819 4.15875
4.21516 4.29880 4.37872 4.42809 4.47078 4.53336 4.55710 4.58497
4.64195 4.71545 4.76303 4.85136 4.85804 4.89570 4.94266 4.98116
5.06359 5.10812 5.25262 5.39100 5.51252 5.73118 5.81962 5.85090
5.89566 5.91336 6.10932 6.18314 6.27910 6.31372 6.84765 7.19152
7.37266 8.91126
Molecular weight = 292.20amu
Principal moments of inertia in cm(-1)
A = 0.024687 B = 0.002681 C = 0.002527
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1133.915180 B =10439.643406 C =11076.194070
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.068 3.932
2 N -0.450 5.450
3 C -0.049 4.049
4 C -0.062 4.062
5 N -0.529 5.529
6 C 0.198 3.802
7 C 0.143 3.857
8 N -0.539 5.539
9 C 0.075 3.925
10 C 0.061 3.939
11 N -0.545 5.545
12 C 0.070 3.930
13 C -0.089 4.089
14 C 0.027 3.973
15 C -0.543 4.543
16 H 0.057 0.943
17 C -0.001 4.001
18 N -0.933 5.933
19 Si 0.965 3.035
20 H -0.264 1.264
21 H -0.277 1.277
22 H -0.276 1.276
23 C 0.054 3.946
24 C 0.065 3.935
25 H 0.079 0.921
26 H 0.107 0.893
27 H 0.100 0.900
28 H 0.206 0.794
29 H 0.178 0.822
30 H 0.060 0.940
31 H 0.120 0.880
32 H 0.035 0.965
33 H 0.072 0.928
34 H 0.027 0.973
35 H 0.068 0.932
36 H 0.022 0.978
37 H 0.074 0.926
38 H 0.051 0.949
39 H 0.044 0.956
40 H -0.011 1.011
41 H -0.006 1.006
42 H 0.264 0.736
43 H 0.036 0.964
44 H 0.091 0.909
45 H 0.112 0.888
46 H 0.043 0.957
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.739 14.710 -24.237 30.318
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 N -0.132 5.132
3 C -0.183 4.183
4 C -0.210 4.210
5 N -0.249 5.249
6 C -0.065 4.065
7 C 0.014 3.986
8 N -0.265 5.265
9 C -0.053 4.053
10 C -0.067 4.067
11 N -0.270 5.270
12 C -0.058 4.058
13 C -0.127 4.127
14 C -0.010 4.010
15 C -0.581 4.581
16 H 0.075 0.925
17 C -0.198 4.198
18 N -0.574 5.574
19 Si 0.789 3.211
20 H -0.188 1.188
21 H -0.202 1.202
22 H -0.201 1.201
23 C -0.073 4.073
24 C -0.063 4.063
25 H 0.097 0.903
26 H 0.125 0.875
27 H 0.119 0.881
28 H 0.223 0.777
29 H 0.195 0.805
30 H 0.078 0.922
31 H 0.138 0.862
32 H 0.053 0.947
33 H 0.090 0.910
34 H 0.046 0.954
35 H 0.087 0.913
36 H 0.040 0.960
37 H 0.093 0.907
38 H 0.070 0.930
39 H 0.063 0.937
40 H 0.008 0.992
41 H 0.013 0.987
42 H 0.073 0.927
43 H 0.054 0.946
44 H 0.109 0.891
45 H 0.130 0.870
46 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges -10.313 14.138 -24.102 29.785
hybrid contribution 0.327 0.422 1.037 1.166
sum -9.986 14.560 -23.065 29.046
Atomic orbital electron populations
1.22307 0.74275 1.06190 1.04514 1.45483 1.09065 1.05918 1.52761
1.23207 0.90777 0.93832 1.10460 1.22663 0.98062 0.90873 1.09365
1.70183 1.20225 1.13508 1.21033 1.23173 0.85696 0.91575 1.06037
1.20358 1.02307 0.86135 0.89810 1.62148 1.21096 1.28417 1.14825
1.21942 0.90110 1.00325 0.92920 1.22103 0.98980 0.89139 0.96522
1.62198 1.21977 1.26892 1.15957 1.21989 0.97387 0.99149 0.87228
1.21391 0.95805 0.99742 0.95785 1.18960 0.95600 0.94497 0.91981
1.21713 0.93955 1.44189 0.98201 0.92522 1.25981 1.00982 0.95230
0.97636 1.70098 1.30382 1.47418 1.09466 0.85398 0.79345 0.77998
0.78314 1.18791 1.20244 1.20102 1.22253 0.89385 1.01382 0.94318
1.22212 1.00073 0.88186 0.95791 0.90263 0.87469 0.88098 0.77697
0.80500 0.92215 0.86248 0.94716 0.90974 0.95441 0.91317 0.95992
0.90746 0.93032 0.93727 0.99244 0.98715 0.92715 0.94598 0.89053
0.86969 0.93849
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.49 10.97 127.77 1.40 1.90 16
2 N -0.45 -7.26 3.15 -537.61 -1.69 -8.96 16
3 C -0.05 -0.78 11.58 83.08 0.96 0.19 16
4 C -0.06 -1.33 11.87 83.52 0.99 -0.34 16
5 N -0.53 -14.06 10.42 -188.13 -1.96 -16.02 16
6 C 0.20 4.24 6.55 138.13 0.90 5.15 16
7 C 0.14 2.50 5.27 85.56 0.45 2.96 16
8 N -0.54 -11.38 4.70 -900.27 -4.23 -15.61 16
9 C 0.08 2.06 5.44 86.31 0.47 2.53 16
10 C 0.06 1.89 5.41 86.31 0.47 2.36 16
11 N -0.55 -16.87 4.71 -895.71 -4.22 -21.08 16
12 C 0.07 2.55 4.96 86.30 0.43 2.98 16
13 C -0.09 -3.94 5.09 30.59 0.16 -3.78 16
14 C 0.03 1.50 4.97 29.85 0.15 1.64 16
15 C -0.54 -32.19 9.11 25.60 0.23 -31.96 16
16 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16
17 C 0.00 -0.04 5.46 84.66 0.46 0.42 16
18 N -0.93 -58.05 13.29 21.45 0.28 -57.76 16
19 Si 0.97 45.59 29.54 68.60 2.03 47.61 16
20 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16
21 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16
22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16
23 C 0.05 1.28 5.61 86.31 0.48 1.76 16
24 C 0.06 1.18 5.61 86.31 0.48 1.67 16
25 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16
26 H 0.11 0.26 8.14 -2.39 -0.02 0.25 16
27 H 0.10 0.42 7.04 -2.39 -0.02 0.41 16
28 H 0.21 1.66 8.06 -2.91 -0.02 1.63 16
29 H 0.18 3.11 8.06 -2.91 -0.02 3.08 16
30 H 0.06 1.15 8.12 -2.39 -0.02 1.13 16
31 H 0.12 1.25 6.94 -2.39 -0.02 1.23 16
32 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16
33 H 0.07 2.17 6.57 -2.39 -0.02 2.16 16
34 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16
35 H 0.07 2.35 6.34 -2.39 -0.02 2.33 16
36 H 0.02 0.82 8.12 -2.38 -0.02 0.80 16
37 H 0.07 2.62 8.03 -2.39 -0.02 2.60 16
38 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16
39 H 0.04 1.97 6.49 -2.38 -0.02 1.95 16
40 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16
41 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16
42 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16
43 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16
44 H 0.09 1.93 8.07 -2.39 -0.02 1.91 16
45 H 0.11 1.29 8.07 -2.39 -0.02 1.27 16
46 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16
Total: -1.00 -74.69 364.25 -0.82 -75.52
By element:
Atomic # 1 Polarization: 7.92 SS G_CDS: 0.93 Total: 8.85 kcal
Atomic # 6 Polarization: -20.58 SS G_CDS: 8.04 Total: -12.54 kcal
Atomic # 7 Polarization: -107.61 SS G_CDS: -11.82 Total: -119.43 kcal
Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal
Total: -74.69 -0.82 -75.52 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000069442886.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 121.829 kcal
(2) G-P(sol) polarization free energy of solvation -74.693 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.136 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.822 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.516 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.314 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds