Wall clock time and date at job start Tue Mar 31 2020 02:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33244 * 125.52647 * 2 1 4 4 C 1.30831 * 109.82528 * 180.02562 * 3 2 1 5 5 C 1.50705 * 125.95907 * 180.02562 * 4 3 2 6 6 N 1.34428 * 108.07974 * 359.97438 * 4 3 2 7 7 C 1.46496 * 126.82389 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.47015 * 88.23106 * 7 6 4 9 9 H 1.09001 * 109.45656 * 300.29482 * 8 7 6 10 10 C 1.53038 * 109.46408 * 60.27088 * 8 7 6 11 11 C 1.53117 * 109.28123 * 179.19850 * 10 8 7 12 12 C 1.53124 * 109.15835 * 302.34223 * 11 10 8 13 13 C 1.53040 * 109.27482 * 57.65685 * 12 11 10 14 14 N 1.46842 * 109.52322 * 300.81861 * 13 12 11 15 15 C 1.46902 * 110.99988 * 185.84326 * 14 13 12 16 16 C 1.53002 * 109.47335 * 64.67608 * 15 14 13 17 17 C 1.50699 * 109.47305 * 174.57208 * 16 15 14 18 18 H 1.07997 * 120.00082 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00031 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00012 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00093 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47116 * 90.00060 * 21 19 17 23 23 H 1.48498 * 109.47143 * 210.00620 * 21 19 17 24 24 H 1.48505 * 109.46960 * 330.00063 * 21 19 17 25 25 N 1.30709 * 125.52472 * 180.28803 * 2 1 3 26 26 H 1.09002 * 109.47282 * 89.97606 * 1 2 3 27 27 H 1.09004 * 109.47172 * 209.97620 * 1 2 3 28 28 H 1.09003 * 109.47222 * 329.97204 * 1 2 3 29 29 H 1.09006 * 109.46702 * 263.95920 * 5 4 3 30 30 H 1.09001 * 109.46976 * 23.95537 * 5 4 3 31 31 H 1.08999 * 109.47129 * 143.95613 * 5 4 3 32 32 H 1.09000 * 109.47539 * 328.23568 * 7 6 4 33 33 H 1.08998 * 109.47805 * 208.22977 * 7 6 4 34 34 H 1.08993 * 109.50488 * 59.25210 * 10 8 7 35 35 H 1.09002 * 109.53117 * 299.16028 * 10 8 7 36 36 H 1.08999 * 109.52461 * 182.44104 * 11 10 8 37 37 H 1.09001 * 109.52538 * 62.24895 * 11 10 8 38 38 H 1.08995 * 109.50721 * 297.71698 * 12 11 10 39 39 H 1.08994 * 109.53427 * 177.61560 * 12 11 10 40 40 H 1.09004 * 109.45814 * 180.80268 * 13 12 11 41 41 H 1.08997 * 109.46347 * 60.83669 * 13 12 11 42 42 H 1.09000 * 109.47196 * 184.67247 * 15 14 13 43 43 H 1.08998 * 109.46915 * 304.67552 * 15 14 13 44 44 H 1.09006 * 109.46914 * 294.57119 * 16 15 14 45 45 H 1.09001 * 109.47214 * 54.57166 * 16 15 14 46 46 H 0.97001 * 120.00419 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2813 1.0844 0.0000 4 6 3.5408 0.7303 -0.0006 5 6 4.7228 1.6652 -0.0002 6 7 3.5966 -0.6128 -0.0003 7 6 4.8047 -1.4414 -0.0013 8 6 5.2518 -1.6928 1.4401 9 1 5.4596 -0.7401 1.9272 10 6 4.1405 -2.4218 2.1989 11 6 4.6000 -2.6890 3.6349 12 6 5.8935 -3.5078 3.6044 13 6 6.9540 -2.7473 2.8049 14 7 6.4672 -2.5170 1.4388 15 6 7.5124 -1.9121 0.6024 16 6 8.6732 -2.8965 0.4454 17 6 9.6841 -2.3314 -0.5188 18 1 9.5158 -1.3665 -0.9738 19 6 10.8244 -3.0458 -0.8194 20 7 11.0297 -4.2205 -0.2649 21 14 12.0779 -2.3451 -2.0140 22 1 13.0779 -1.5407 -1.2670 23 1 12.7642 -3.4567 -2.7200 24 1 11.3879 -1.4807 -3.0050 25 7 2.2665 -1.0638 -0.0053 26 1 -0.3634 0.0004 -1.0277 27 1 -0.3634 -0.8902 0.5135 28 1 -0.3634 0.8897 0.5143 29 1 5.0746 1.8064 -1.0222 30 1 4.4253 2.6269 0.4178 31 1 5.5234 1.2384 0.6040 32 1 5.5981 -0.9265 -0.5431 33 1 4.5918 -2.3937 -0.4870 34 1 3.9225 -3.3683 1.7044 35 1 3.2428 -1.8036 2.2131 36 1 3.8286 -3.2463 4.1664 37 1 4.7806 -1.7412 4.1419 38 1 5.7033 -4.4714 3.1320 39 1 6.2491 -3.6655 4.6226 40 1 7.8719 -3.3341 2.7692 41 1 7.1538 -1.7897 3.2856 42 1 7.1011 -1.6760 -0.3790 43 1 7.8724 -0.9983 1.0750 44 1 9.1460 -3.0582 1.4142 45 1 8.2962 -3.8447 0.0622 46 1 11.8317 -4.7233 -0.4766 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070020960.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:11 Heat of formation + Delta-G solvation = 72.743584 kcal Electronic energy + Delta-G solvation = -24191.008747 eV Core-core repulsion = 20923.707119 eV Total energy + Delta-G solvation = -3267.301627 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.196 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.16272 -39.17429 -34.87030 -34.29853 -32.85312 -32.57447 -31.19566 -29.47690 -29.21442 -28.08731 -25.76130 -25.01713 -23.25089 -21.87630 -20.74219 -20.38679 -20.19822 -19.41737 -16.92291 -16.58112 -16.03260 -15.15092 -14.90243 -14.65387 -14.36009 -14.26259 -14.01847 -13.79826 -13.58889 -13.49677 -12.98006 -12.88537 -12.86388 -12.54515 -12.52294 -12.19366 -12.15557 -11.84761 -11.54397 -11.26049 -11.02388 -10.97681 -10.69786 -10.62463 -10.51398 -10.18845 -9.96761 -9.89193 -9.58868 -9.45023 -9.25804 -9.15170 -8.39714 -7.89607 -6.06041 -4.09119 1.60356 2.27704 2.86132 3.27421 3.34421 3.36539 3.97310 4.19331 4.38671 4.43116 4.69451 4.72322 4.81318 5.02086 5.13459 5.20054 5.26763 5.28745 5.30827 5.32998 5.42020 5.44546 5.58054 5.62755 5.69292 5.75908 5.81675 5.85572 5.92486 6.00822 6.05656 6.13898 6.25003 6.28698 6.36287 6.43347 6.49164 6.53125 6.81129 6.83915 7.36600 7.43112 7.68027 7.79534 7.99279 8.13721 8.34262 8.97739 9.55115 11.05158 Molecular weight = 292.20amu Principal moments of inertia in cm(-1) A = 0.016589 B = 0.004031 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.435212 B = 6943.855647 C = 8139.098793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.211 3.789 3 N -0.548 5.548 4 C 0.278 3.722 5 C -0.080 4.080 6 N -0.365 5.365 7 C 0.127 3.873 8 C 0.075 3.925 9 H 0.037 0.963 10 C -0.105 4.105 11 C -0.118 4.118 12 C -0.117 4.117 13 C 0.058 3.942 14 N -0.528 5.528 15 C 0.054 3.946 16 C 0.029 3.971 17 C -0.524 4.524 18 H 0.054 0.946 19 C 0.060 3.940 20 N -0.892 5.892 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 N -0.313 5.313 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.026 0.974 42 H 0.064 0.936 43 H 0.021 0.979 44 H 0.017 0.983 45 H 0.027 0.973 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.029 7.653 4.628 18.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.071 4.071 3 N -0.277 5.277 4 C 0.002 3.998 5 C -0.139 4.139 6 N -0.156 5.156 7 C 0.005 3.995 8 C -0.035 4.035 9 H 0.055 0.945 10 C -0.143 4.143 11 C -0.156 4.156 12 C -0.155 4.155 13 C -0.069 4.069 14 N -0.253 5.253 15 C -0.072 4.072 16 C -0.008 4.008 17 C -0.563 4.563 18 H 0.072 0.928 19 C -0.142 4.142 20 N -0.530 5.530 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 N -0.142 5.142 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.044 0.956 42 H 0.082 0.918 43 H 0.039 0.961 44 H 0.035 0.965 45 H 0.045 0.955 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.333 6.586 4.422 18.157 hybrid contribution 1.349 1.081 -0.329 1.760 sum -14.984 7.667 4.093 17.322 Atomic orbital electron populations 1.20033 0.84242 1.03709 1.03435 1.24226 0.98121 0.85975 0.98821 1.70336 0.99809 1.31003 1.26578 1.24311 0.95180 0.84061 0.96283 1.20420 0.91557 0.97495 1.04462 1.50320 1.05919 1.05413 1.53908 1.22106 0.81900 0.96773 0.98719 1.21835 0.92757 0.95400 0.93529 0.94475 1.21550 0.96413 1.01035 0.95307 1.21559 0.97724 0.99793 0.96482 1.21615 0.94801 0.99662 0.99422 1.22100 0.98504 0.98841 0.87496 1.62034 1.04596 1.46958 1.11761 1.22502 0.92480 0.97309 0.94907 1.19090 0.90337 0.94417 0.96978 1.21151 1.04683 1.04215 1.26247 0.92810 1.24981 0.98106 0.94857 0.96252 1.69960 1.27185 1.12422 1.43473 0.86610 0.81561 0.78673 0.81246 1.20691 1.21178 1.19876 1.78029 0.86814 1.22511 1.26882 0.90151 0.90212 0.89881 0.89008 0.88538 0.89799 0.87700 0.87293 0.90871 0.92132 0.92131 0.92828 0.90984 0.91885 0.89069 0.95592 0.91757 0.96069 0.96503 0.95474 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.51 10.51 36.01 0.38 -0.13 16 2 C 0.21 2.90 8.14 -156.85 -1.28 1.63 16 3 N -0.55 -7.93 11.19 -8.16 -0.09 -8.02 16 4 C 0.28 3.72 7.98 -155.69 -1.24 2.47 16 5 C -0.08 -0.78 9.96 36.01 0.36 -0.42 16 6 N -0.37 -5.17 3.06 -58.34 -0.18 -5.34 16 7 C 0.13 1.75 5.25 -4.04 -0.02 1.73 16 8 C 0.07 1.07 2.15 -67.72 -0.15 0.92 16 9 H 0.04 0.54 8.07 -51.93 -0.42 0.12 16 10 C -0.11 -1.44 5.15 -26.65 -0.14 -1.58 16 11 C -0.12 -1.48 6.00 -26.61 -0.16 -1.64 16 12 C -0.12 -1.57 6.09 -26.65 -0.16 -1.73 16 13 C 0.06 0.93 5.28 -3.83 -0.02 0.91 16 14 N -0.53 -8.81 4.50 -226.69 -1.02 -9.83 16 15 C 0.05 1.04 4.60 -3.82 -0.02 1.02 16 16 C 0.03 0.71 4.73 -27.88 -0.13 0.58 16 17 C -0.52 -14.13 9.11 -34.44 -0.31 -14.45 16 18 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 21 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 N -0.31 -4.70 11.89 32.42 0.39 -4.32 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.78 7.96 -51.93 -0.41 0.37 16 32 H 0.11 1.38 5.86 -51.93 -0.30 1.07 16 33 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.87 6.98 -51.93 -0.36 0.51 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.09 1.64 6.28 -51.93 -0.33 1.31 16 41 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 1.17 5.70 -51.93 -0.30 0.87 16 43 H 0.02 0.40 8.13 -51.93 -0.42 -0.02 16 44 H 0.02 0.44 6.66 -51.93 -0.35 0.09 16 45 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 362.74 15.07 5.47 5.47 Total: -1.00 -31.07 362.74 -10.64 -41.71 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.93 Total: -1.20 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -2.99 Total: -9.12 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.17 Total: -52.84 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.07 -10.64 -41.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070020960.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.450 kcal (2) G-P(sol) polarization free energy of solvation -31.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds