Wall clock time and date at job start Tue Mar 31 2020 02:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33244 * 125.52647 * 2 1 4 4 C 1.30831 * 109.82528 * 180.02562 * 3 2 1 5 5 C 1.50705 * 125.95907 * 180.02562 * 4 3 2 6 6 N 1.34428 * 108.07974 * 359.97438 * 4 3 2 7 7 C 1.46496 * 126.82389 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.47015 * 88.23106 * 7 6 4 9 9 H 1.09001 * 109.45656 * 300.29482 * 8 7 6 10 10 C 1.53038 * 109.46408 * 60.27088 * 8 7 6 11 11 C 1.53117 * 109.28123 * 179.19850 * 10 8 7 12 12 C 1.53124 * 109.15835 * 302.34223 * 11 10 8 13 13 C 1.53040 * 109.27482 * 57.65685 * 12 11 10 14 14 N 1.46842 * 109.52322 * 300.81861 * 13 12 11 15 15 C 1.46902 * 110.99988 * 185.84326 * 14 13 12 16 16 C 1.53002 * 109.47335 * 64.67608 * 15 14 13 17 17 C 1.50699 * 109.47305 * 174.57208 * 16 15 14 18 18 H 1.07997 * 120.00082 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00031 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00012 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00093 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47116 * 90.00060 * 21 19 17 23 23 H 1.48498 * 109.47143 * 210.00620 * 21 19 17 24 24 H 1.48505 * 109.46960 * 330.00063 * 21 19 17 25 25 N 1.30709 * 125.52472 * 180.28803 * 2 1 3 26 26 H 1.09002 * 109.47282 * 89.97606 * 1 2 3 27 27 H 1.09004 * 109.47172 * 209.97620 * 1 2 3 28 28 H 1.09003 * 109.47222 * 329.97204 * 1 2 3 29 29 H 1.09006 * 109.46702 * 263.95920 * 5 4 3 30 30 H 1.09001 * 109.46976 * 23.95537 * 5 4 3 31 31 H 1.08999 * 109.47129 * 143.95613 * 5 4 3 32 32 H 1.09000 * 109.47539 * 328.23568 * 7 6 4 33 33 H 1.08998 * 109.47805 * 208.22977 * 7 6 4 34 34 H 1.08993 * 109.50488 * 59.25210 * 10 8 7 35 35 H 1.09002 * 109.53117 * 299.16028 * 10 8 7 36 36 H 1.08999 * 109.52461 * 182.44104 * 11 10 8 37 37 H 1.09001 * 109.52538 * 62.24895 * 11 10 8 38 38 H 1.08995 * 109.50721 * 297.71698 * 12 11 10 39 39 H 1.08994 * 109.53427 * 177.61560 * 12 11 10 40 40 H 1.09004 * 109.45814 * 180.80268 * 13 12 11 41 41 H 1.08997 * 109.46347 * 60.83669 * 13 12 11 42 42 H 1.09000 * 109.47196 * 184.67247 * 15 14 13 43 43 H 1.08998 * 109.46915 * 304.67552 * 15 14 13 44 44 H 1.09006 * 109.46914 * 294.57119 * 16 15 14 45 45 H 1.09001 * 109.47214 * 54.57166 * 16 15 14 46 46 H 0.97001 * 120.00419 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2813 1.0844 0.0000 4 6 3.5408 0.7303 -0.0006 5 6 4.7228 1.6652 -0.0002 6 7 3.5966 -0.6128 -0.0003 7 6 4.8047 -1.4414 -0.0013 8 6 5.2518 -1.6928 1.4401 9 1 5.4596 -0.7401 1.9272 10 6 4.1405 -2.4218 2.1989 11 6 4.6000 -2.6890 3.6349 12 6 5.8935 -3.5078 3.6044 13 6 6.9540 -2.7473 2.8049 14 7 6.4672 -2.5170 1.4388 15 6 7.5124 -1.9121 0.6024 16 6 8.6732 -2.8965 0.4454 17 6 9.6841 -2.3314 -0.5188 18 1 9.5158 -1.3665 -0.9738 19 6 10.8244 -3.0458 -0.8194 20 7 11.0297 -4.2205 -0.2649 21 14 12.0779 -2.3451 -2.0140 22 1 13.0779 -1.5407 -1.2670 23 1 12.7642 -3.4567 -2.7200 24 1 11.3879 -1.4807 -3.0050 25 7 2.2665 -1.0638 -0.0053 26 1 -0.3634 0.0004 -1.0277 27 1 -0.3634 -0.8902 0.5135 28 1 -0.3634 0.8897 0.5143 29 1 5.0746 1.8064 -1.0222 30 1 4.4253 2.6269 0.4178 31 1 5.5234 1.2384 0.6040 32 1 5.5981 -0.9265 -0.5431 33 1 4.5918 -2.3937 -0.4870 34 1 3.9225 -3.3683 1.7044 35 1 3.2428 -1.8036 2.2131 36 1 3.8286 -3.2463 4.1664 37 1 4.7806 -1.7412 4.1419 38 1 5.7033 -4.4714 3.1320 39 1 6.2491 -3.6655 4.6226 40 1 7.8719 -3.3341 2.7692 41 1 7.1538 -1.7897 3.2856 42 1 7.1011 -1.6760 -0.3790 43 1 7.8724 -0.9983 1.0750 44 1 9.1460 -3.0582 1.4142 45 1 8.2962 -3.8447 0.0622 46 1 11.8317 -4.7233 -0.4766 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070020960.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:10 Heat of formation + Delta-G solvation = 55.329503 kcal Electronic energy + Delta-G solvation = -24191.763878 eV Core-core repulsion = 20923.707119 eV Total energy + Delta-G solvation = -3268.056759 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 292.196 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.18441 -40.43319 -36.05528 -35.80838 -34.36171 -33.79840 -32.31260 -30.96056 -30.31965 -29.08404 -27.02424 -26.50844 -24.79081 -23.05405 -21.92932 -21.70976 -21.33956 -20.60344 -18.61505 -17.89133 -17.28042 -16.54574 -16.39543 -16.00036 -15.57556 -15.41405 -15.26050 -15.00272 -14.54317 -14.43359 -14.28173 -14.15218 -13.91355 -13.76264 -13.63347 -13.37045 -13.13414 -13.06928 -12.92446 -12.83230 -12.59227 -12.44901 -12.14335 -11.99431 -11.77578 -11.59960 -11.42212 -11.18929 -11.07788 -11.01801 -10.65555 -10.51162 -10.26654 -9.25636 -8.17943 -6.28522 0.58382 1.24096 1.42353 1.43086 1.53701 1.86063 2.41416 2.93912 3.11776 3.16465 3.35887 3.56326 3.76210 3.78825 3.89756 4.04172 4.10851 4.22456 4.33705 4.45173 4.49303 4.50643 4.56145 4.57497 4.62720 4.74867 4.76947 4.85039 4.88882 4.94363 4.96291 4.98793 4.99824 5.08789 5.14627 5.22168 5.33808 5.39423 5.49534 5.54357 5.67202 5.79031 5.85533 6.09852 6.22138 6.31763 6.89356 7.11523 7.40778 8.94016 Molecular weight = 292.20amu Principal moments of inertia in cm(-1) A = 0.016589 B = 0.004031 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.435212 B = 6943.855647 C = 8139.098793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.204 3.796 3 N -0.568 5.568 4 C 0.275 3.725 5 C -0.080 4.080 6 N -0.373 5.373 7 C 0.133 3.867 8 C 0.082 3.918 9 H 0.043 0.957 10 C -0.097 4.097 11 C -0.112 4.112 12 C -0.111 4.111 13 C 0.057 3.943 14 N -0.537 5.537 15 C 0.071 3.929 16 C 0.037 3.963 17 C -0.540 4.540 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.932 5.932 21 Si 0.962 3.038 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.261 1.261 25 N -0.343 5.343 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.033 0.967 42 H 0.075 0.925 43 H 0.027 0.973 44 H -0.007 1.007 45 H -0.007 1.007 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.751 9.454 4.561 19.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.078 4.078 3 N -0.298 5.298 4 C -0.001 4.001 5 C -0.139 4.139 6 N -0.163 5.163 7 C 0.011 3.989 8 C -0.027 4.027 9 H 0.061 0.939 10 C -0.135 4.135 11 C -0.150 4.150 12 C -0.148 4.148 13 C -0.070 4.070 14 N -0.263 5.263 15 C -0.056 4.056 16 C 0.000 4.000 17 C -0.578 4.578 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.572 5.572 21 Si 0.786 3.214 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.185 1.185 25 N -0.172 5.172 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.114 0.886 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.107 0.893 32 H 0.130 0.870 33 H 0.115 0.885 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.051 0.949 42 H 0.093 0.907 43 H 0.046 0.954 44 H 0.011 0.989 45 H 0.011 0.989 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.075 8.399 4.360 19.522 hybrid contribution 1.527 0.515 -0.285 1.636 sum -15.548 8.914 4.074 18.379 Atomic orbital electron populations 1.20210 0.81624 1.04813 1.04617 1.25025 0.99749 0.85504 0.97488 1.70392 1.00394 1.31429 1.27566 1.25010 0.95967 0.84136 0.94948 1.20597 0.90343 0.97315 1.05595 1.50280 1.05672 1.05744 1.54614 1.21972 0.82210 0.96439 0.98257 1.21800 0.91569 0.95190 0.94172 0.93888 1.21457 0.95898 1.00169 0.95979 1.21533 0.97452 1.00192 0.95777 1.21570 0.94548 0.98875 0.99844 1.22088 0.98331 0.99054 0.87549 1.61924 1.04724 1.47594 1.12054 1.22153 0.91434 0.95764 0.96232 1.18904 0.91855 0.94216 0.95021 1.21631 1.05209 1.04611 1.26387 0.91729 1.25918 1.00428 0.95137 0.98126 1.70104 1.27965 1.13963 1.45181 0.85500 0.78858 0.77985 0.79021 1.19902 1.21214 1.18472 1.77993 0.87320 1.23544 1.28321 0.88823 0.89200 0.88644 0.87575 0.87171 0.89270 0.86976 0.88504 0.92059 0.92485 0.90408 0.92075 0.91960 0.89948 0.91973 0.94892 0.90667 0.95447 0.98906 0.98865 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.91 10.51 71.24 0.75 -0.16 16 2 C 0.20 5.39 8.14 138.63 1.13 6.52 16 3 N -0.57 -15.64 11.19 -179.72 -2.01 -17.65 16 4 C 0.28 6.95 7.98 138.23 1.10 8.06 16 5 C -0.08 -1.37 9.96 71.24 0.71 -0.66 16 6 N -0.37 -10.19 3.06 -338.49 -1.03 -11.23 16 7 C 0.13 3.58 5.25 86.38 0.45 4.04 16 8 C 0.08 2.27 2.15 44.94 0.10 2.36 16 9 H 0.04 1.17 8.07 -2.39 -0.02 1.15 16 10 C -0.10 -2.56 5.15 30.65 0.16 -2.40 16 11 C -0.11 -2.59 6.00 30.67 0.18 -2.40 16 12 C -0.11 -2.85 6.09 30.65 0.19 -2.67 16 13 C 0.06 1.83 5.28 86.33 0.46 2.29 16 14 N -0.54 -17.89 4.50 -871.11 -3.92 -21.81 16 15 C 0.07 2.70 4.60 86.30 0.40 3.10 16 16 C 0.04 1.89 4.73 29.85 0.14 2.03 16 17 C -0.54 -29.27 9.11 25.60 0.23 -29.03 16 18 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 19 C 0.00 0.11 5.46 84.65 0.46 0.57 16 20 N -0.93 -55.75 13.29 21.45 0.28 -55.47 16 21 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 23 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 24 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 25 N -0.34 -10.04 11.89 -51.33 -0.61 -10.65 16 26 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 27 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.09 1.45 7.96 -2.39 -0.02 1.43 16 32 H 0.11 2.80 5.86 -2.39 -0.01 2.79 16 33 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 1.57 6.98 -2.39 -0.02 1.56 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.06 2.33 6.28 -2.39 -0.01 2.32 16 41 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.08 2.68 5.70 -2.39 -0.01 2.67 16 43 H 0.03 1.01 8.13 -2.39 -0.02 0.99 16 44 H -0.01 -0.40 6.66 -2.38 -0.02 -0.42 16 45 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 46 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -67.43 362.74 2.14 -65.29 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.94 Total: 14.90 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 6.46 Total: -8.35 kcal Atomic # 7 Polarization: -109.53 SS G_CDS: -7.29 Total: -116.82 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -67.43 2.14 -65.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070020960.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.622 kcal (2) G-P(sol) polarization free energy of solvation -67.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds