Wall clock time and date at job start Tue Mar 31 2020 03:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99666 * 2 1 4 4 C 1.53006 * 109.47266 * 66.04829 * 3 2 1 5 5 C 1.52998 * 109.47302 * 179.97438 * 4 3 2 6 6 S 1.80997 * 109.47053 * 179.97438 * 5 4 3 7 7 C 1.76208 * 99.99773 * 180.02562 * 6 5 4 8 8 H 1.07997 * 119.99837 * 0.02562 * 7 6 5 9 9 C 1.38798 * 119.99719 * 180.02562 * 7 6 5 10 10 N 1.31631 * 119.99999 * 179.97438 * 9 7 6 11 11 Si 1.86807 * 120.00065 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.46973 * 89.99934 * 11 9 7 13 13 H 1.48503 * 109.46627 * 209.99752 * 11 9 7 14 14 H 1.48497 * 109.47097 * 329.99596 * 11 9 7 15 15 C 1.46898 * 110.99843 * 236.04598 * 2 1 3 16 16 H 1.08997 * 109.64486 * 63.58116 * 15 2 1 17 17 C 1.54366 * 109.49889 * 303.27832 * 15 2 1 18 18 C 1.55045 * 106.37868 * 193.07783 * 17 15 2 19 19 S 1.83289 * 102.73907 * 42.39041 * 18 17 15 20 20 O 1.42099 * 109.35456 * 90.09202 * 19 18 17 21 21 O 1.42105 * 109.34924 * 223.29428 * 19 18 17 22 22 C 1.54167 * 109.64079 * 184.00590 * 15 2 1 23 23 H 1.08997 * 109.47218 * 182.60643 * 1 2 3 24 24 H 1.08997 * 109.47056 * 302.61500 * 1 2 3 25 25 H 1.09002 * 109.47021 * 62.60979 * 1 2 3 26 26 H 1.09004 * 109.46868 * 186.04375 * 3 2 1 27 27 H 1.08997 * 109.47762 * 306.04540 * 3 2 1 28 28 H 1.09004 * 109.46807 * 299.99583 * 4 3 2 29 29 H 1.08997 * 109.46966 * 59.99223 * 4 3 2 30 30 H 1.08993 * 109.47223 * 300.00199 * 5 4 3 31 31 H 1.09004 * 109.46870 * 59.99500 * 5 4 3 32 32 H 0.97003 * 120.00070 * 179.97438 * 10 9 7 33 33 H 1.08998 * 110.26434 * 73.79614 * 17 15 2 34 34 H 1.09002 * 110.03146 * 312.22400 * 17 15 2 35 35 H 1.08999 * 110.79081 * 284.02384 * 18 17 15 36 36 H 1.09000 * 110.78913 * 160.75287 * 18 17 15 37 37 H 1.08999 * 110.32307 * 28.72724 * 22 15 2 38 38 H 1.08998 * 110.40602 * 266.57442 * 22 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 1.3183 5 6 2.1802 3.4856 1.3186 6 16 1.7489 4.2974 2.8778 7 6 2.4817 5.8778 2.6128 8 1 3.0008 6.0842 1.6885 9 6 2.3918 6.8573 3.5921 10 7 2.9396 8.0378 3.3944 11 14 1.4946 6.5000 5.1911 12 1 2.4517 5.9471 6.1828 13 1 0.9051 7.7565 5.7193 14 1 0.4139 5.5124 4.9423 15 6 1.9955 -0.7660 -1.1376 16 1 1.7004 -0.2859 -2.0706 17 6 1.4347 -2.2035 -1.0945 18 6 2.2758 -3.0313 -2.1001 19 16 3.9831 -2.4496 -1.7742 20 8 4.5749 -3.2645 -0.7718 21 8 4.6543 -2.2438 -3.0097 22 6 3.5334 -0.8304 -1.0517 23 1 -0.3633 -1.0266 0.0467 24 1 -0.3633 0.5539 0.8656 25 1 -0.3633 0.4728 -0.9125 26 1 3.0797 1.3444 -0.1082 27 1 1.5611 1.9274 -0.8309 28 1 0.5471 2.0845 1.4265 29 1 2.0657 1.5015 2.1492 30 1 3.2644 3.4583 1.2105 31 1 1.7462 4.0418 0.4876 32 1 2.8765 8.7225 4.0786 33 1 0.3860 -2.2087 -1.3916 34 1 1.5408 -2.6158 -0.0910 35 1 1.9807 -2.8097 -3.1258 36 1 2.1847 -4.0979 -1.8949 37 1 3.8571 -0.7768 -0.0122 38 1 3.9805 -0.0211 -1.6289 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080626608.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:42 Heat of formation + Delta-G solvation = -74.386948 kcal Electronic energy + Delta-G solvation = -19171.228641 eV Core-core repulsion = 16074.066175 eV Total energy + Delta-G solvation = -3097.162466 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.091 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.11395 -37.35984 -36.34381 -35.18337 -32.47238 -32.33652 -30.35670 -27.09088 -25.76653 -25.54048 -23.82681 -21.14608 -20.61802 -19.14845 -17.56688 -17.30964 -17.16020 -16.05100 -15.84802 -15.33036 -15.00454 -14.91375 -14.84096 -14.40627 -13.84161 -13.69234 -13.15215 -12.87834 -12.62906 -12.51283 -12.41044 -12.38338 -12.32017 -11.94048 -11.82646 -11.64908 -11.48326 -11.10636 -11.05001 -10.99454 -10.68914 -10.43651 -10.18266 -9.81027 -9.03089 -8.66988 -8.59777 -6.97577 -6.30880 -4.03584 -0.32456 2.14499 2.95653 3.21619 3.28331 3.37420 3.43124 3.58961 3.76435 3.94719 4.08853 4.28976 4.30095 4.44100 4.53736 4.76901 4.89514 5.01502 5.05221 5.07984 5.10244 5.21106 5.28425 5.33755 5.43956 5.49810 5.54568 5.65781 5.76285 5.87550 6.15717 6.39286 6.54690 6.74609 6.77216 7.92839 8.41550 9.14952 10.78636 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.032792 B = 0.002823 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.657178 B = 9914.995625 C =10299.708233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.529 5.529 3 C 0.054 3.946 4 C -0.098 4.098 5 C -0.083 4.083 6 S -0.214 6.214 7 C -0.503 4.503 8 H 0.087 0.913 9 C 0.091 3.909 10 N -0.882 5.882 11 Si 0.862 3.138 12 H -0.268 1.268 13 H -0.276 1.276 14 H -0.238 1.238 15 C 0.091 3.909 16 H 0.064 0.936 17 C -0.116 4.116 18 C -0.589 4.589 19 S 2.393 3.607 20 O -0.933 6.933 21 O -0.941 6.941 22 C -0.591 4.591 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.028 0.972 26 H 0.080 0.920 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.271 0.729 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.152 0.848 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.871 -22.290 -11.387 25.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.254 5.254 3 C -0.075 4.075 4 C -0.136 4.136 5 C -0.232 4.232 6 S 0.014 5.986 7 C -0.651 4.651 8 H 0.105 0.895 9 C -0.117 4.117 10 N -0.519 5.519 11 Si 0.687 3.313 12 H -0.193 1.193 13 H -0.201 1.201 14 H -0.162 1.162 15 C -0.019 4.019 16 H 0.082 0.918 17 C -0.155 4.155 18 C -0.719 4.719 19 S 2.576 3.424 20 O -0.931 6.931 21 O -0.938 6.938 22 C -0.721 4.721 23 H 0.089 0.911 24 H 0.099 0.901 25 H 0.047 0.953 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.171 0.829 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.354 -23.133 -10.155 25.636 hybrid contribution -0.622 1.524 -0.928 1.890 sum -4.976 -21.609 -11.083 24.789 Atomic orbital electron populations 1.22565 0.86827 1.02376 1.01672 1.62111 1.08281 1.14599 1.40383 1.22296 1.00626 0.86591 0.98017 1.21350 1.01487 0.94012 0.96800 1.23015 1.02786 0.96888 1.00552 1.84160 1.75402 1.15870 1.23181 1.22121 1.40278 0.95141 1.07525 0.89452 1.24803 0.94467 0.94030 0.98375 1.69938 1.43065 1.03832 1.35028 0.86662 0.81772 0.79248 0.83608 1.19323 1.20110 1.16191 1.22045 0.90407 0.94922 0.94535 0.91837 1.22403 1.01342 0.92129 0.99606 1.30616 1.22478 1.10319 1.08456 1.08970 0.78584 0.78941 0.75953 1.93637 1.74287 1.65645 1.59481 1.93621 1.71563 1.85451 1.43154 1.30711 1.04185 1.21937 1.15258 0.91078 0.90091 0.95316 0.90180 0.94403 0.91404 0.90535 0.91399 0.91595 0.91948 0.88444 0.88215 0.84563 0.84306 0.82946 0.84289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 8.99 60.07 0.54 0.65 16 2 N -0.53 -4.87 4.59 -233.29 -1.07 -5.94 16 3 C 0.05 0.60 4.81 -3.82 -0.02 0.58 16 4 C -0.10 -1.39 5.15 -26.73 -0.14 -1.53 16 5 C -0.08 -1.55 5.67 37.16 0.21 -1.33 16 6 S -0.21 -5.12 19.41 -107.50 -2.09 -7.20 16 7 C -0.50 -14.48 10.04 30.94 0.31 -14.16 16 8 H 0.09 2.68 8.03 -52.49 -0.42 2.25 16 9 C 0.09 2.66 5.50 -17.43 -0.10 2.56 16 10 N -0.88 -26.66 13.97 55.49 0.78 -25.88 16 11 Si 0.86 21.38 27.74 -169.99 -4.72 16.67 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.24 -5.76 6.74 56.52 0.38 -5.37 16 15 C 0.09 0.63 2.36 -66.39 -0.16 0.47 16 16 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 17 C -0.12 -0.58 4.96 -24.93 -0.12 -0.70 16 18 C -0.59 -2.49 7.29 38.24 0.28 -2.21 16 19 S 2.39 17.71 6.11 -107.50 -0.66 17.06 16 20 O -0.93 -10.51 18.15 -57.71 -1.05 -11.55 16 21 O -0.94 -10.34 18.15 -57.71 -1.05 -11.39 16 22 C -0.59 -4.06 5.40 37.77 0.20 -3.86 16 23 H 0.07 0.44 6.50 -51.93 -0.34 0.10 16 24 H 0.08 0.74 6.35 -51.93 -0.33 0.41 16 25 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.08 0.85 6.63 -51.93 -0.34 0.51 16 27 H 0.04 0.42 8.12 -51.93 -0.42 -0.01 16 28 H 0.07 0.95 6.50 -51.93 -0.34 0.62 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 31 H 0.07 1.22 8.14 -51.91 -0.42 0.80 16 32 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.10 0.37 7.22 -51.93 -0.37 -0.01 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.14 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.14 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.15 1.12 7.99 -51.93 -0.41 0.70 16 38 H 0.14 0.83 8.01 -51.93 -0.42 0.41 16 LS Contribution 328.02 15.07 4.94 4.94 Total: -1.00 -36.40 328.02 -9.83 -46.23 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -5.94 Total: -3.39 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 1.01 Total: -19.54 kcal Atomic # 7 Polarization: -31.52 SS G_CDS: -0.30 Total: -31.82 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -2.09 Total: -22.94 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.72 Total: 16.67 kcal Atomic # 16 Polarization: 12.60 SS G_CDS: -2.74 Total: 9.85 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.40 -9.83 -46.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080626608.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.161 kcal (2) G-P(sol) polarization free energy of solvation -36.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds