Wall clock time and date at job start Tue Mar 31 2020 03:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99923 * 2 1 4 4 H 1.48496 * 109.46799 * 239.99608 * 3 2 1 5 5 H 1.48491 * 109.47212 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46937 * 120.00014 * 3 2 1 7 7 C 1.37878 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99379 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00447 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47236 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.47086 * 179.97438 * 10 9 7 12 12 S 1.81400 * 109.46859 * 179.97438 * 11 10 9 13 13 O 1.42100 * 110.54297 * 68.37487 * 12 11 10 14 14 O 1.42093 * 110.54543 * 291.62388 * 12 11 10 15 15 N 1.65603 * 104.44663 * 179.97438 * 12 11 10 16 16 C 1.46501 * 120.00008 * 65.00028 * 15 12 11 17 17 H 1.09001 * 109.30678 * 334.75514 * 16 15 12 18 18 C 1.52577 * 109.39273 * 214.99926 * 16 15 12 19 19 C 1.52581 * 110.69350 * 169.15488 * 18 16 15 20 20 C 1.53101 * 109.95708 * 70.69611 * 19 18 16 21 21 S 1.81749 * 108.83912 * 296.97592 * 20 19 18 22 22 C 1.53119 * 109.36279 * 94.53072 * 16 15 12 23 23 H 0.97003 * 120.00130 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47194 * 59.99471 * 9 7 2 25 25 H 1.09009 * 109.47210 * 299.99656 * 9 7 2 26 26 H 1.08994 * 109.47562 * 59.99994 * 10 9 7 27 27 H 1.09000 * 109.47323 * 299.99570 * 10 9 7 28 28 H 1.08998 * 109.46957 * 60.00132 * 11 10 9 29 29 H 1.09000 * 109.46740 * 299.99990 * 11 10 9 30 30 H 0.96993 * 120.00233 * 244.99726 * 15 12 11 31 31 H 1.09002 * 109.22650 * 48.85399 * 18 16 15 32 32 H 1.09000 * 109.22513 * 289.45136 * 18 16 15 33 33 H 1.08994 * 109.38989 * 190.84217 * 19 18 16 34 34 H 1.09004 * 109.39006 * 310.64926 * 19 18 16 35 35 H 1.08999 * 109.57434 * 56.77893 * 20 19 18 36 36 H 1.08991 * 109.57831 * 177.03859 * 20 19 18 37 37 H 1.09005 * 109.60522 * 63.40148 * 22 16 15 38 38 H 1.09000 * 109.68475 * 303.06622 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 16 2.6590 -6.3659 0.0004 13 8 3.3566 -6.4262 1.2369 14 8 3.3548 -6.4264 -1.2370 15 7 1.7086 -7.7221 0.0019 16 6 0.8478 -8.0146 -1.1469 17 1 0.6117 -7.0857 -1.6661 18 6 -0.4435 -8.6652 -0.6599 19 6 -1.4687 -8.7391 -1.7875 20 6 -1.0302 -9.7758 -2.8253 21 16 0.5395 -9.2368 -3.5663 22 6 1.5808 -8.9600 -2.1027 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8904 26 1 2.8719 -3.6044 0.8904 27 1 2.8718 -3.6044 -0.8895 28 1 0.8532 -5.0451 -0.8886 29 1 0.8538 -5.0446 0.8914 30 1 1.7218 -8.3227 0.7634 31 1 -0.8543 -8.0771 0.1608 32 1 -0.2263 -9.6729 -0.3057 33 1 -2.4374 -9.0247 -1.3777 34 1 -1.5515 -7.7631 -2.2658 35 1 -0.8923 -10.7422 -2.3404 36 1 -1.7917 -9.8614 -3.6003 37 1 1.7697 -9.9105 -1.6037 38 1 2.5273 -8.5131 -2.4071 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096452745.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:06 Heat of formation + Delta-G solvation = -100.974801 kcal Electronic energy + Delta-G solvation = -19643.935542 eV Core-core repulsion = 16545.620140 eV Total energy + Delta-G solvation = -3098.315402 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.20883 -36.89530 -35.80946 -34.70208 -34.02374 -32.20727 -29.88974 -27.85405 -27.57972 -23.76320 -23.10910 -21.36475 -20.68409 -19.26974 -17.58421 -17.34850 -16.67913 -16.11106 -15.76671 -15.44234 -15.02079 -14.76899 -14.50393 -14.18718 -13.97776 -13.50537 -13.43972 -12.62675 -12.36432 -12.30801 -12.04126 -11.91716 -11.85392 -11.80709 -11.76887 -11.44310 -11.27477 -10.93415 -10.90277 -10.86403 -10.54058 -10.31019 -9.96862 -9.72484 -9.36518 -9.12743 -8.41405 -7.94320 -6.06669 -4.09850 0.38285 1.47037 2.20160 2.81963 3.31819 3.35691 3.38908 3.85707 4.15759 4.33509 4.34436 4.41693 4.42953 4.58986 4.74707 4.93285 5.02341 5.09364 5.13734 5.21243 5.27801 5.29879 5.41539 5.56800 5.65054 5.72118 5.81789 5.89545 6.23521 6.41455 6.77150 6.84882 7.54857 7.64773 7.91010 8.31419 8.96043 9.54935 11.04501 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.021345 B = 0.003590 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.453909 B = 7796.547680 C = 8398.928264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.608 4.608 12 S 2.597 3.403 13 O -0.962 6.962 14 O -0.958 6.958 15 N -1.119 6.119 16 C 0.154 3.846 17 H 0.098 0.902 18 C -0.137 4.137 19 C -0.122 4.122 20 C -0.088 4.088 21 S -0.252 6.252 22 C -0.102 4.102 23 H 0.262 0.738 24 H 0.021 0.979 25 H 0.020 0.980 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.415 0.585 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.855 -21.531 -2.222 21.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.145 4.145 11 C -0.740 4.740 12 S 2.693 3.307 13 O -0.952 6.952 14 O -0.948 6.948 15 N -0.875 5.875 16 C 0.045 3.955 17 H 0.116 0.884 18 C -0.176 4.176 19 C -0.162 4.162 20 C -0.237 4.237 21 S -0.026 6.026 22 C -0.252 4.252 23 H 0.072 0.928 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.248 0.752 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.125 0.875 37 H 0.106 0.894 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.777 -21.206 -3.476 21.667 hybrid contribution -0.607 0.654 1.589 1.823 sum -3.384 -20.551 -1.886 20.913 Atomic orbital electron populations 1.69947 1.06091 1.26906 1.50488 1.25014 0.94887 0.99358 0.95047 0.86610 0.79578 0.82801 0.78781 1.20093 1.21233 1.20119 1.21212 0.93228 0.90895 1.51246 0.92414 1.19059 0.93514 0.90431 0.97733 1.21508 0.99407 0.91587 1.02024 1.30548 1.16358 1.15882 1.11234 1.05459 0.75681 0.75241 0.74312 1.93584 1.70610 1.85843 1.45213 1.93576 1.70149 1.85629 1.45462 1.55939 1.62020 1.42483 1.27107 1.21023 0.89576 0.99315 0.85592 0.88409 1.21872 0.94372 1.02074 0.99291 1.21755 0.98968 1.00030 0.95409 1.23523 0.96991 1.01266 1.01873 1.87146 1.11776 1.88576 1.15132 1.24136 1.01899 1.03192 0.95954 0.92834 0.96087 0.96131 0.91567 0.91480 0.85514 0.85226 0.75151 0.89655 0.90978 0.90141 0.89885 0.89850 0.87545 0.89380 0.85886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.42 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.53 -14.79 9.11 -34.44 -0.31 -15.11 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.78 4.97 -27.89 -0.14 0.64 16 10 C -0.11 -2.11 5.16 -26.73 -0.14 -2.25 16 11 C -0.61 -9.01 5.96 37.16 0.22 -8.78 16 12 S 2.60 36.31 5.38 -107.50 -0.58 35.74 16 13 O -0.96 -16.35 18.08 -57.54 -1.04 -17.39 16 14 O -0.96 -16.11 17.02 -57.54 -0.98 -17.09 16 15 N -1.12 -10.87 5.35 -5.02 -0.03 -10.90 16 16 C 0.15 1.41 2.40 -68.09 -0.16 1.25 16 17 H 0.10 0.94 7.04 -51.93 -0.37 0.57 16 18 C -0.14 -0.92 5.13 -27.16 -0.14 -1.06 16 19 C -0.12 -0.78 5.75 -26.89 -0.15 -0.93 16 20 C -0.09 -0.60 6.46 37.21 0.24 -0.36 16 21 S -0.25 -2.54 22.33 -107.50 -2.40 -4.95 16 22 C -0.10 -1.00 6.04 37.22 0.22 -0.78 16 23 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 26 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.13 1.66 7.43 -51.92 -0.39 1.28 16 29 H 0.13 1.70 8.14 -51.92 -0.42 1.27 16 30 H 0.41 3.15 8.79 -34.47 -0.30 2.84 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.60 8.05 -51.93 -0.42 0.18 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.12 1.45 7.34 -51.93 -0.38 1.07 16 LS Contribution 332.96 15.07 5.02 5.02 Total: -1.00 -34.44 332.96 -10.79 -45.23 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.04 Total: -0.64 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: -0.46 Total: -25.82 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.71 Total: -36.58 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -2.02 Total: -34.48 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 33.77 SS G_CDS: -2.98 Total: 30.79 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.44 -10.79 -45.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096452745.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.743 kcal (2) G-P(sol) polarization free energy of solvation -34.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds