Wall clock time and date at job start Tue Mar 31 2020 03:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99923 * 2 1 4 4 H 1.48496 * 109.46799 * 239.99608 * 3 2 1 5 5 H 1.48491 * 109.47212 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46937 * 120.00014 * 3 2 1 7 7 C 1.37878 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99379 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00447 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47236 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.47086 * 179.97438 * 10 9 7 12 12 S 1.81400 * 109.46859 * 179.97438 * 11 10 9 13 13 O 1.42100 * 110.54297 * 68.37487 * 12 11 10 14 14 O 1.42093 * 110.54543 * 291.62388 * 12 11 10 15 15 N 1.65603 * 104.44663 * 179.97438 * 12 11 10 16 16 C 1.46501 * 120.00008 * 65.00028 * 15 12 11 17 17 H 1.09001 * 109.30678 * 334.75514 * 16 15 12 18 18 C 1.52577 * 109.39273 * 214.99926 * 16 15 12 19 19 C 1.52581 * 110.69350 * 169.15488 * 18 16 15 20 20 C 1.53101 * 109.95708 * 70.69611 * 19 18 16 21 21 S 1.81749 * 108.83912 * 296.97592 * 20 19 18 22 22 C 1.53119 * 109.36279 * 94.53072 * 16 15 12 23 23 H 0.97003 * 120.00130 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47194 * 59.99471 * 9 7 2 25 25 H 1.09009 * 109.47210 * 299.99656 * 9 7 2 26 26 H 1.08994 * 109.47562 * 59.99994 * 10 9 7 27 27 H 1.09000 * 109.47323 * 299.99570 * 10 9 7 28 28 H 1.08998 * 109.46957 * 60.00132 * 11 10 9 29 29 H 1.09000 * 109.46740 * 299.99990 * 11 10 9 30 30 H 0.96993 * 120.00233 * 244.99726 * 15 12 11 31 31 H 1.09002 * 109.22650 * 48.85399 * 18 16 15 32 32 H 1.09000 * 109.22513 * 289.45136 * 18 16 15 33 33 H 1.08994 * 109.38989 * 190.84217 * 19 18 16 34 34 H 1.09004 * 109.39006 * 310.64926 * 19 18 16 35 35 H 1.08999 * 109.57434 * 56.77893 * 20 19 18 36 36 H 1.08991 * 109.57831 * 177.03859 * 20 19 18 37 37 H 1.09005 * 109.60522 * 63.40148 * 22 16 15 38 38 H 1.09000 * 109.68475 * 303.06622 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 16 2.6590 -6.3659 0.0004 13 8 3.3566 -6.4262 1.2369 14 8 3.3548 -6.4264 -1.2370 15 7 1.7086 -7.7221 0.0019 16 6 0.8478 -8.0146 -1.1469 17 1 0.6117 -7.0857 -1.6661 18 6 -0.4435 -8.6652 -0.6599 19 6 -1.4687 -8.7391 -1.7875 20 6 -1.0302 -9.7758 -2.8253 21 16 0.5395 -9.2368 -3.5663 22 6 1.5808 -8.9600 -2.1027 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8904 26 1 2.8719 -3.6044 0.8904 27 1 2.8718 -3.6044 -0.8895 28 1 0.8532 -5.0451 -0.8886 29 1 0.8538 -5.0446 0.8914 30 1 1.7218 -8.3227 0.7634 31 1 -0.8543 -8.0771 0.1608 32 1 -0.2263 -9.6729 -0.3057 33 1 -2.4374 -9.0247 -1.3777 34 1 -1.5515 -7.7631 -2.2658 35 1 -0.8923 -10.7422 -2.3404 36 1 -1.7917 -9.8614 -3.6003 37 1 1.7697 -9.9105 -1.6037 38 1 2.5273 -8.5131 -2.4071 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096452745.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:05 Heat of formation + Delta-G solvation = -125.357950 kcal Electronic energy + Delta-G solvation = -19644.992874 eV Core-core repulsion = 16545.620140 eV Total energy + Delta-G solvation = -3099.372735 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.091 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.93500 -38.12294 -37.07835 -36.47620 -34.69862 -34.17026 -30.66568 -29.66938 -28.17687 -25.64035 -23.76676 -22.49227 -21.92014 -20.38327 -18.73308 -18.53724 -18.10388 -17.29495 -17.04959 -16.50569 -16.28857 -15.98353 -15.48593 -15.41481 -14.68142 -14.49306 -14.17855 -14.07171 -14.03999 -13.54743 -13.36091 -13.22159 -13.14635 -12.99002 -12.74903 -12.66807 -12.51348 -12.37859 -12.18145 -11.96370 -11.76061 -11.61970 -11.41038 -11.28456 -10.90314 -10.56948 -10.36263 -8.71686 -8.22681 -6.33652 -0.78555 0.76649 1.40403 1.42779 1.49280 1.50739 1.85525 2.39893 2.71033 3.10909 3.19870 3.53288 3.69241 3.72627 3.87222 3.89096 4.01727 4.11851 4.31020 4.37956 4.45209 4.54224 4.64569 4.74301 4.85579 4.91629 4.99358 5.04806 5.07033 5.15410 5.32942 5.44890 5.62574 5.79124 6.06800 6.19604 6.81600 7.35648 8.88537 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.021345 B = 0.003590 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.453909 B = 7796.547680 C = 8398.928264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.555 4.555 8 H 0.059 0.941 9 C 0.031 3.969 10 C -0.107 4.107 11 C -0.610 4.610 12 S 2.627 3.373 13 O -0.990 6.990 14 O -0.987 6.987 15 N -1.099 6.099 16 C 0.148 3.852 17 H 0.091 0.909 18 C -0.133 4.133 19 C -0.122 4.122 20 C -0.074 4.074 21 S -0.307 6.307 22 C -0.096 4.096 23 H 0.265 0.735 24 H 0.003 0.997 25 H 0.004 0.996 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.143 0.857 29 H 0.149 0.851 30 H 0.429 0.571 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.492 -22.614 -1.630 23.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.593 4.593 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.146 4.146 11 C -0.740 4.740 12 S 2.722 3.278 13 O -0.981 6.981 14 O -0.977 6.977 15 N -0.860 5.860 16 C 0.039 3.961 17 H 0.109 0.891 18 C -0.172 4.172 19 C -0.161 4.161 20 C -0.221 4.221 21 S -0.082 6.082 22 C -0.246 4.246 23 H 0.074 0.926 24 H 0.022 0.978 25 H 0.023 0.977 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.161 0.839 29 H 0.167 0.833 30 H 0.266 0.734 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.122 0.878 34 H 0.090 0.910 35 H 0.118 0.882 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.407 -22.293 -2.873 22.734 hybrid contribution -0.475 0.913 1.376 1.718 sum -3.882 -21.380 -1.498 21.781 Atomic orbital electron populations 1.70059 1.07588 1.27959 1.51251 1.25914 0.95808 1.03154 0.94528 0.85550 0.78390 0.78267 0.79182 1.19315 1.20565 1.19230 1.21715 0.93729 0.92580 1.51249 0.92235 1.18958 0.94005 0.91765 0.95975 1.21312 0.98705 0.92540 1.02044 1.30507 1.16688 1.13677 1.13165 1.04332 0.75177 0.75359 0.72906 1.93541 1.71721 1.86433 1.46365 1.93545 1.71225 1.86187 1.46722 1.55455 1.61596 1.40986 1.27980 1.21221 0.90546 0.99311 0.85070 0.89097 1.21883 0.92795 1.02924 0.99619 1.21774 0.99875 0.99383 0.95070 1.23613 0.94456 1.01941 1.02135 1.87339 1.14851 1.89044 1.16922 1.24059 1.00777 1.03932 0.95784 0.92616 0.97845 0.97743 0.91546 0.91644 0.83885 0.83255 0.73404 0.88601 0.89269 0.87793 0.91001 0.88234 0.86528 0.87737 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.40 13.29 21.45 0.28 -55.11 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.55 -31.51 9.11 25.60 0.23 -31.27 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.03 1.60 4.97 29.84 0.15 1.75 16 10 C -0.11 -4.29 5.16 30.60 0.16 -4.13 16 11 C -0.61 -17.56 5.96 71.99 0.43 -17.13 16 12 S 2.63 71.20 5.38 -56.49 -0.30 70.90 16 13 O -0.99 -32.75 18.08 -127.65 -2.31 -35.06 16 14 O -0.99 -33.06 17.02 -127.65 -2.17 -35.23 16 15 N -1.10 -19.27 5.35 -169.81 -0.91 -20.18 16 16 C 0.15 2.44 2.40 44.89 0.11 2.54 16 17 H 0.09 1.64 7.04 -2.39 -0.02 1.63 16 18 C -0.13 -1.38 5.13 30.31 0.16 -1.22 16 19 C -0.12 -1.19 5.75 30.49 0.18 -1.02 16 20 C -0.07 -0.81 6.46 72.02 0.46 -0.35 16 21 S -0.31 -5.98 22.33 -56.49 -1.26 -7.24 16 22 C -0.10 -1.79 6.04 72.02 0.44 -1.35 16 23 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 24 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 25 H 0.00 0.22 8.14 -2.38 -0.02 0.21 16 26 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.14 3.63 7.43 -2.39 -0.02 3.61 16 29 H 0.15 3.69 8.14 -2.39 -0.02 3.67 16 30 H 0.43 5.38 8.79 -96.75 -0.85 4.53 16 31 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 0.66 8.08 -2.39 -0.02 0.64 16 33 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.90 8.05 -2.39 -0.02 0.88 16 35 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.10 2.34 7.34 -2.39 -0.02 2.32 16 Total: -1.00 -74.74 332.96 -1.68 -76.42 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.19 Total: 10.89 kcal Atomic # 6 Polarization: -54.24 SS G_CDS: 2.77 Total: -51.47 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -0.62 Total: -75.29 kcal Atomic # 8 Polarization: -65.81 SS G_CDS: -4.48 Total: -70.29 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 65.22 SS G_CDS: -1.57 Total: 63.66 kcal Total: -74.74 -1.68 -76.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096452745.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.939 kcal (2) G-P(sol) polarization free energy of solvation -74.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds