Wall clock time and date at job start Tue Mar 31 2020 03:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36934 * 120.00161 * 2 1 4 4 H 1.08000 * 119.99818 * 321.40996 * 3 2 1 5 5 C 1.38812 * 119.99772 * 141.41683 * 3 2 1 6 6 N 1.31628 * 119.99860 * 158.02436 * 5 3 2 7 7 Si 1.86795 * 120.00590 * 338.01994 * 5 3 2 8 8 H 1.48498 * 109.47193 * 95.63682 * 7 5 3 9 9 H 1.48500 * 109.47688 * 215.64129 * 7 5 3 10 10 H 1.48503 * 109.46827 * 335.64279 * 7 5 3 11 11 C 1.46507 * 119.99695 * 179.97438 * 2 1 3 12 12 N 1.46500 * 109.47178 * 90.00363 * 11 2 1 13 13 C 1.39465 * 126.25702 * 89.99508 * 12 11 2 14 14 C 1.38615 * 133.36292 * 0.02562 * 13 12 11 15 15 C 1.38129 * 119.82494 * 179.97438 * 14 13 12 16 16 N 1.48023 * 119.90446 * 180.02562 * 15 14 13 17 17 O 1.21797 * 120.00139 * 359.97438 * 16 15 14 18 18 O 1.21798 * 119.99716 * 180.02562 * 16 15 14 19 19 C 1.38409 * 120.18591 * 0.02562 * 15 14 13 20 20 C 1.38119 * 120.31078 * 359.97146 * 19 15 14 21 21 C 1.38614 * 119.91982 * 0.05082 * 20 19 15 22 22 O 1.35556 * 132.99790 * 179.97438 * 21 20 19 23 23 C 1.34230 * 109.17953 * 179.70753 * 22 21 20 24 24 O 1.21594 * 125.27689 * 180.29434 * 23 22 21 25 25 H 1.08997 * 109.46875 * 265.15183 * 1 2 3 26 26 H 1.08996 * 109.46772 * 25.15677 * 1 2 3 27 27 H 1.08997 * 109.46941 * 145.15427 * 1 2 3 28 28 H 0.96993 * 120.00020 * 179.97438 * 6 5 3 29 29 H 1.08999 * 109.46735 * 210.00193 * 11 2 1 30 30 H 1.09001 * 109.47172 * 329.99981 * 11 2 1 31 31 H 1.08000 * 120.08872 * 0.02562 * 14 13 12 32 32 H 1.07997 * 119.84477 * 180.02562 * 19 15 14 33 33 H 1.08000 * 120.04122 * 180.02562 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7866 2.0190 -0.5834 5 6 3.3106 1.3170 0.7497 6 7 4.1913 2.2456 0.4421 7 14 3.6229 0.1759 2.1953 8 1 4.4737 -0.9589 1.7553 9 1 4.3149 0.9235 3.2758 10 1 2.3283 -0.3443 2.7039 11 6 2.1975 -1.2688 0.0006 12 7 2.4417 -1.6923 -1.3805 13 6 3.5531 -1.3684 -2.1582 14 6 4.6925 -0.6149 -1.9229 15 6 5.6407 -0.4743 -2.9174 16 7 6.8583 0.3296 -2.6678 17 8 7.0228 0.8663 -1.5869 18 8 7.6953 0.4550 -3.5437 19 6 5.4555 -1.0830 -4.1466 20 6 4.3228 -1.8354 -4.3882 21 6 3.3654 -1.9818 -3.3965 22 8 2.1827 -2.6420 -3.3436 23 6 1.6352 -2.4694 -2.1302 24 8 0.5750 -2.9395 -1.7649 25 1 -0.3633 -0.0869 1.0240 26 1 -0.3633 0.9302 -0.4369 27 1 -0.3633 -0.8434 -0.5872 28 1 5.0023 2.3375 0.9662 29 1 3.1499 -1.1383 0.5144 30 1 1.6084 -2.0282 0.5147 31 1 4.8388 -0.1395 -0.9642 32 1 6.2007 -0.9698 -4.9201 33 1 4.1829 -2.3088 -5.3488 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101536476.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:51 Heat of formation + Delta-G solvation = 21.791201 kcal Electronic energy + Delta-G solvation = -24214.305176 eV Core-core repulsion = 20439.576142 eV Total energy + Delta-G solvation = -3774.729034 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.089 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.23212 -41.79236 -38.61138 -37.59408 -36.55653 -36.21420 -34.56022 -32.02559 -31.37458 -29.99885 -27.44531 -26.24711 -26.17109 -22.99753 -22.78133 -22.45657 -21.06414 -19.67416 -18.53603 -18.18747 -17.53268 -17.25141 -17.14321 -16.76212 -16.01741 -15.39002 -14.92009 -14.73551 -14.49876 -14.22424 -13.50617 -13.43578 -13.27268 -13.06964 -12.50718 -12.31128 -11.82775 -11.73825 -11.32068 -11.22157 -10.99124 -10.97735 -10.87059 -10.78144 -10.65249 -10.42332 -9.95287 -9.26337 -8.96999 -8.21925 -7.47156 -6.38490 -3.87602 -0.00839 0.84184 1.49345 1.60120 2.19614 2.63425 2.90824 2.94478 3.19958 3.20308 3.23824 4.09917 4.12320 4.54047 4.57796 4.65888 4.84402 4.85423 4.97937 5.30768 5.42673 5.59745 5.67142 5.83625 5.95014 6.06579 6.08242 6.26820 6.48324 6.50917 6.64905 7.23743 7.57363 7.83295 7.96277 7.99036 8.48552 9.22053 9.57451 10.73710 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.012480 B = 0.009456 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.002094 B = 2960.447889 C = 4739.605881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.578 5.578 3 C -0.299 4.299 4 H 0.087 0.913 5 C 0.048 3.952 6 N -0.861 5.861 7 Si 0.852 3.148 8 H -0.280 1.280 9 H -0.284 1.284 10 H -0.262 1.262 11 C 0.338 3.662 12 N -0.533 5.533 13 C 0.094 3.906 14 C -0.016 4.016 15 C -0.030 4.030 16 N 0.032 4.968 17 O -0.132 6.132 18 O -0.175 6.175 19 C -0.061 4.061 20 C -0.085 4.085 21 C 0.072 3.928 22 O -0.242 6.242 23 C 0.628 3.372 24 O -0.491 6.491 25 H 0.025 0.975 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.277 0.723 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.172 0.828 32 H 0.164 0.836 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.707 -8.212 -6.648 10.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.299 5.299 3 C -0.427 4.427 4 H 0.104 0.896 5 C -0.157 4.157 6 N -0.497 5.497 7 Si 0.680 3.320 8 H -0.208 1.208 9 H -0.210 1.210 10 H -0.186 1.186 11 C 0.132 3.868 12 N -0.271 5.271 13 C -0.008 4.008 14 C -0.037 4.037 15 C -0.115 4.115 16 N 0.553 4.447 17 O -0.354 6.354 18 O -0.386 6.386 19 C -0.081 4.081 20 C -0.104 4.104 21 C 0.023 3.977 22 O -0.148 6.148 23 C 0.382 3.618 24 O -0.375 6.375 25 H 0.043 0.957 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.189 0.811 32 H 0.182 0.818 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.434 -8.821 -6.546 10.993 hybrid contribution 0.452 -0.165 1.005 1.114 sum 0.886 -8.986 -5.541 10.594 Atomic orbital electron populations 1.21353 0.82765 1.00413 0.98799 1.44801 1.02254 1.02276 1.80522 1.18881 1.07514 0.90348 1.25973 0.89583 1.25518 0.96427 0.96625 0.97124 1.69801 1.08356 1.33389 1.38202 0.87298 0.78724 0.80644 0.85331 1.20795 1.21047 1.18649 1.22482 0.98073 0.88405 0.77802 1.49497 1.16523 1.44561 1.16487 1.18359 0.91486 0.99695 0.91281 1.19956 0.88768 0.93762 1.01239 1.20596 0.89447 1.03913 0.97500 1.43380 1.01471 0.99409 1.00478 1.94656 1.82668 1.46302 1.11788 1.94478 1.38145 1.66482 1.39494 1.20599 0.97652 0.94682 0.95154 1.19759 0.90727 1.01400 0.98505 1.19323 0.87138 0.95880 0.95378 1.84974 1.30651 1.63681 1.35449 1.19059 0.84602 0.80068 0.78041 1.91100 1.19400 1.55336 1.71661 0.95691 0.92841 0.94008 0.91267 0.89344 0.89309 0.81095 0.81810 0.82423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.13 10.70 59.85 0.64 2.77 16 2 N -0.58 -12.69 2.70 -184.86 -0.50 -13.19 16 3 C -0.30 -7.46 9.88 -15.06 -0.15 -7.61 16 4 H 0.09 2.38 8.06 -52.49 -0.42 1.96 16 5 C 0.05 1.22 4.51 -17.43 -0.08 1.14 16 6 N -0.86 -23.02 13.97 55.49 0.78 -22.24 16 7 Si 0.85 19.09 25.06 -169.99 -4.26 14.83 16 8 H -0.28 -5.95 6.69 56.52 0.38 -5.57 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 11 C 0.34 6.78 5.42 -63.74 -0.35 6.43 16 12 N -0.53 -10.15 3.05 -122.50 -0.37 -10.52 16 13 C 0.09 1.67 6.84 -83.79 -0.57 1.09 16 14 C -0.02 -0.29 9.54 -39.48 -0.38 -0.67 16 15 C -0.03 -0.50 6.85 -79.92 -0.55 -1.04 16 16 N 0.03 0.58 4.45 33.98 0.15 0.73 16 17 O -0.13 -2.69 18.44 -29.46 -0.54 -3.24 16 18 O -0.17 -2.98 18.44 -29.46 -0.54 -3.52 16 19 C -0.06 -0.74 9.54 -39.56 -0.38 -1.12 16 20 C -0.08 -0.96 10.06 -39.49 -0.40 -1.36 16 21 C 0.07 1.09 7.35 -38.99 -0.29 0.80 16 22 O -0.24 -4.00 10.72 -21.98 -0.24 -4.24 16 23 C 0.63 11.74 9.07 54.05 0.49 12.23 16 24 O -0.49 -10.00 17.22 -19.00 -0.33 -10.33 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 1.00 8.00 -51.93 -0.42 0.59 16 27 H 0.04 0.78 7.52 -51.93 -0.39 0.38 16 28 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.09 1.84 3.38 -51.93 -0.18 1.67 16 30 H 0.09 1.63 7.99 -51.93 -0.41 1.21 16 31 H 0.17 3.63 6.80 -52.49 -0.36 3.27 16 32 H 0.16 1.53 7.60 -52.49 -0.40 1.14 16 33 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 298.59 15.07 4.50 4.50 Total: -1.00 -27.90 298.59 -5.94 -33.83 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -2.58 Total: 0.71 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: -2.00 Total: 12.67 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.05 Total: -45.22 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -1.65 Total: -21.32 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.26 Total: 14.83 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.90 -5.94 -33.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101536476.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.622 kcal (2) G-P(sol) polarization free energy of solvation -27.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds