Wall clock time and date at job start Tue Mar 31 2020 03:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36934 * 120.00161 * 2 1 4 4 H 1.08000 * 119.99818 * 321.40996 * 3 2 1 5 5 C 1.38812 * 119.99772 * 141.41683 * 3 2 1 6 6 N 1.31628 * 119.99860 * 158.02436 * 5 3 2 7 7 Si 1.86795 * 120.00590 * 338.01994 * 5 3 2 8 8 H 1.48498 * 109.47193 * 95.63682 * 7 5 3 9 9 H 1.48500 * 109.47688 * 215.64129 * 7 5 3 10 10 H 1.48503 * 109.46827 * 335.64279 * 7 5 3 11 11 C 1.46507 * 119.99695 * 179.97438 * 2 1 3 12 12 N 1.46500 * 109.47178 * 90.00363 * 11 2 1 13 13 C 1.39465 * 126.25702 * 89.99508 * 12 11 2 14 14 C 1.38615 * 133.36292 * 0.02562 * 13 12 11 15 15 C 1.38129 * 119.82494 * 179.97438 * 14 13 12 16 16 N 1.48023 * 119.90446 * 180.02562 * 15 14 13 17 17 O 1.21797 * 120.00139 * 359.97438 * 16 15 14 18 18 O 1.21798 * 119.99716 * 180.02562 * 16 15 14 19 19 C 1.38409 * 120.18591 * 0.02562 * 15 14 13 20 20 C 1.38119 * 120.31078 * 359.97146 * 19 15 14 21 21 C 1.38614 * 119.91982 * 0.05082 * 20 19 15 22 22 O 1.35556 * 132.99790 * 179.97438 * 21 20 19 23 23 C 1.34230 * 109.17953 * 179.70753 * 22 21 20 24 24 O 1.21594 * 125.27689 * 180.29434 * 23 22 21 25 25 H 1.08997 * 109.46875 * 265.15183 * 1 2 3 26 26 H 1.08996 * 109.46772 * 25.15677 * 1 2 3 27 27 H 1.08997 * 109.46941 * 145.15427 * 1 2 3 28 28 H 0.96993 * 120.00020 * 179.97438 * 6 5 3 29 29 H 1.08999 * 109.46735 * 210.00193 * 11 2 1 30 30 H 1.09001 * 109.47172 * 329.99981 * 11 2 1 31 31 H 1.08000 * 120.08872 * 0.02562 * 14 13 12 32 32 H 1.07997 * 119.84477 * 180.02562 * 19 15 14 33 33 H 1.08000 * 120.04122 * 180.02562 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7866 2.0190 -0.5834 5 6 3.3106 1.3170 0.7497 6 7 4.1913 2.2456 0.4421 7 14 3.6229 0.1759 2.1953 8 1 4.4737 -0.9589 1.7553 9 1 4.3149 0.9235 3.2758 10 1 2.3283 -0.3443 2.7039 11 6 2.1975 -1.2688 0.0006 12 7 2.4417 -1.6923 -1.3805 13 6 3.5531 -1.3684 -2.1582 14 6 4.6925 -0.6149 -1.9229 15 6 5.6407 -0.4743 -2.9174 16 7 6.8583 0.3296 -2.6678 17 8 7.0228 0.8663 -1.5869 18 8 7.6953 0.4550 -3.5437 19 6 5.4555 -1.0830 -4.1466 20 6 4.3228 -1.8354 -4.3882 21 6 3.3654 -1.9818 -3.3965 22 8 2.1827 -2.6420 -3.3436 23 6 1.6352 -2.4694 -2.1302 24 8 0.5750 -2.9395 -1.7649 25 1 -0.3633 -0.0869 1.0240 26 1 -0.3633 0.9302 -0.4369 27 1 -0.3633 -0.8434 -0.5872 28 1 5.0023 2.3375 0.9662 29 1 3.1499 -1.1383 0.5144 30 1 1.6084 -2.0282 0.5147 31 1 4.8388 -0.1395 -0.9642 32 1 6.2007 -0.9698 -4.9201 33 1 4.1829 -2.3088 -5.3488 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101536476.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:50 Heat of formation + Delta-G solvation = 5.366172 kcal Electronic energy + Delta-G solvation = -24215.017419 eV Core-core repulsion = 20439.576142 eV Total energy + Delta-G solvation = -3775.441277 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.089 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.60455 -43.19265 -39.94946 -39.07356 -38.08896 -37.63282 -36.11761 -33.89573 -32.60872 -31.34568 -29.00386 -27.96150 -27.59427 -24.26150 -24.22098 -23.97672 -22.65439 -21.06268 -19.95417 -19.58914 -19.02699 -18.68556 -18.55438 -18.32393 -17.63337 -16.94074 -16.43182 -16.13236 -16.02321 -15.43018 -15.11048 -14.88786 -14.72805 -14.54216 -14.05232 -13.87045 -13.41626 -13.14816 -12.88007 -12.74384 -12.63577 -12.55323 -12.28268 -12.23428 -12.18570 -12.09015 -11.75167 -10.87478 -10.44361 -9.60441 -9.26611 -8.34803 -5.84535 -1.34177 -0.34082 0.14999 0.28335 0.78210 1.12340 1.18924 1.32864 1.39578 1.58819 2.00802 2.21667 2.82741 2.89860 3.10921 3.26253 3.43161 3.46900 3.77037 3.98316 4.09765 4.20055 4.40645 4.51937 4.64036 4.71862 4.77695 4.92811 4.94797 5.00707 5.26806 5.70289 5.83835 6.01976 6.35067 6.52495 6.63100 7.30625 7.70533 8.80214 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.012480 B = 0.009456 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.002094 B = 2960.447889 C = 4739.605881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.595 5.595 3 C -0.292 4.292 4 H 0.046 0.954 5 C 0.015 3.985 6 N -0.903 5.903 7 Si 0.902 3.098 8 H -0.268 1.268 9 H -0.294 1.294 10 H -0.249 1.249 11 C 0.343 3.657 12 N -0.543 5.543 13 C 0.065 3.935 14 C -0.039 4.039 15 C -0.040 4.040 16 N 0.032 4.968 17 O -0.224 6.224 18 O -0.113 6.113 19 C -0.032 4.032 20 C -0.050 4.050 21 C 0.078 3.922 22 O -0.231 6.231 23 C 0.633 3.367 24 O -0.510 6.510 25 H 0.039 0.961 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.272 0.728 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.133 0.867 32 H 0.210 0.790 33 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.001 -10.759 -9.555 14.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.317 5.317 3 C -0.421 4.421 4 H 0.063 0.937 5 C -0.187 4.187 6 N -0.542 5.542 7 Si 0.728 3.272 8 H -0.195 1.195 9 H -0.221 1.221 10 H -0.172 1.172 11 C 0.138 3.862 12 N -0.280 5.280 13 C -0.035 4.035 14 C -0.061 4.061 15 C -0.124 4.124 16 N 0.550 4.450 17 O -0.423 6.423 18 O -0.344 6.344 19 C -0.052 4.052 20 C -0.068 4.068 21 C 0.029 3.971 22 O -0.135 6.135 23 C 0.387 3.613 24 O -0.395 6.395 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.127 0.873 31 H 0.151 0.849 32 H 0.227 0.773 33 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.673 -11.351 -9.280 14.677 hybrid contribution 0.456 0.530 1.520 1.674 sum 1.130 -10.820 -7.759 13.363 Atomic orbital electron populations 1.21356 0.81305 1.00445 0.99715 1.44810 1.03160 1.01767 1.81977 1.18528 1.07607 0.90826 1.25160 0.93665 1.25890 0.96105 0.97890 0.98793 1.69906 1.08960 1.35956 1.39334 0.86489 0.79149 0.79437 0.82106 1.19483 1.22120 1.17242 1.22210 0.97732 0.88156 0.78105 1.48762 1.17525 1.45201 1.16495 1.18390 0.91262 1.01316 0.92569 1.19695 0.90385 0.95223 1.00838 1.20829 0.88328 1.04481 0.98770 1.43643 1.01986 0.99260 1.00121 1.94709 1.84276 1.50197 1.13127 1.94405 1.37764 1.63772 1.38482 1.21219 0.98334 0.91917 0.93685 1.20450 0.88108 0.99026 0.99261 1.19797 0.87112 0.95150 0.95025 1.84971 1.31100 1.63606 1.33862 1.18811 0.84180 0.79745 0.78514 1.91086 1.20045 1.56067 1.72346 0.94286 0.93278 0.93349 0.91809 0.90481 0.87316 0.84924 0.77340 0.76604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.42 10.70 127.77 1.37 5.79 16 2 N -0.59 -26.48 2.70 -738.76 -2.00 -28.48 16 3 C -0.29 -15.28 9.88 84.03 0.83 -14.45 16 4 H 0.05 2.69 8.06 -2.91 -0.02 2.67 16 5 C 0.02 0.81 4.51 84.86 0.38 1.19 16 6 N -0.90 -51.50 13.97 21.65 0.30 -51.20 16 7 Si 0.90 40.73 25.06 68.60 1.72 42.45 16 8 H -0.27 -11.41 6.69 99.48 0.67 -10.74 16 9 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 10 H -0.25 -10.60 7.11 99.48 0.71 -9.90 16 11 C 0.34 13.76 5.42 170.96 0.93 14.69 16 12 N -0.54 -20.36 3.05 -772.08 -2.35 -22.71 16 13 C 0.07 2.26 6.84 38.31 0.26 2.52 16 14 C -0.04 -1.47 9.54 22.33 0.21 -1.26 16 15 C -0.04 -1.24 6.85 36.39 0.25 -0.99 16 16 N 0.03 1.14 4.45 -46.42 -0.21 0.93 16 17 O -0.22 -9.71 18.44 18.89 0.35 -9.36 16 18 O -0.11 -3.52 18.44 18.89 0.35 -3.17 16 19 C -0.03 -0.60 9.54 22.28 0.21 -0.39 16 20 C -0.05 -0.82 10.06 22.33 0.22 -0.60 16 21 C 0.08 2.07 7.35 22.65 0.17 2.24 16 22 O -0.23 -6.88 10.72 8.55 0.09 -6.79 16 23 C 0.63 22.63 9.07 129.79 1.18 23.81 16 24 O -0.51 -20.01 17.22 19.21 0.33 -19.68 16 25 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.05 1.88 8.00 -2.39 -0.02 1.86 16 27 H 0.05 1.76 7.52 -2.39 -0.02 1.74 16 28 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.08 3.26 3.38 -2.39 -0.01 3.25 16 30 H 0.11 3.87 7.99 -2.39 -0.02 3.86 16 31 H 0.13 6.06 6.80 -2.91 -0.02 6.04 16 32 H 0.21 2.24 7.60 -2.91 -0.02 2.22 16 33 H 0.22 1.26 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -66.27 298.59 5.74 -60.54 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.14 Total: 4.93 kcal Atomic # 6 Polarization: 26.53 SS G_CDS: 6.01 Total: 32.55 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -4.25 Total: -101.46 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: 1.12 Total: -39.00 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 1.72 Total: 42.45 kcal Total: -66.27 5.74 -60.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101536476.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.901 kcal (2) G-P(sol) polarization free energy of solvation -66.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds