Wall clock time and date at job start Tue Mar 31 2020 02:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.47077 * 2 1 4 4 C 1.50697 * 109.47222 * 119.99209 * 2 1 3 5 5 H 1.08006 * 120.00306 * 119.99921 * 4 2 1 6 6 C 1.37884 * 120.00543 * 300.00437 * 4 2 1 7 7 N 1.31510 * 120.00428 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 119.99442 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47406 * 90.00263 * 8 6 4 10 10 H 1.48501 * 109.46867 * 210.00004 * 8 6 4 11 11 H 1.48503 * 109.47371 * 329.99707 * 8 6 4 12 12 N 1.46499 * 109.47213 * 239.99482 * 2 1 3 13 13 S 1.65597 * 119.99926 * 95.27634 * 12 2 1 14 14 O 1.42096 * 106.40195 * 178.26439 * 13 12 2 15 15 O 1.42108 * 106.40105 * 311.18495 * 13 12 2 16 16 C 1.76199 * 107.22117 * 64.72196 * 13 12 2 17 17 C 1.34606 * 125.97311 * 89.99677 * 16 13 12 18 18 N 1.37049 * 106.83446 * 179.97438 * 17 16 13 19 19 C 1.46494 * 126.40819 * 180.02562 * 18 17 16 20 20 C 1.35116 * 107.18507 * 0.02562 * 18 17 16 21 21 Cl 1.73598 * 125.66327 * 180.02562 * 20 18 17 22 22 N 1.30622 * 108.67140 * 359.75397 * 20 18 17 23 23 H 1.08996 * 109.47409 * 60.00575 * 1 2 3 24 24 H 1.09006 * 109.46787 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47504 * 300.00369 * 1 2 3 26 26 H 0.96994 * 119.99998 * 180.02562 * 7 6 4 27 27 H 0.97001 * 119.99790 * 274.99423 * 12 2 1 28 28 H 1.07994 * 126.58353 * 359.97438 * 17 16 13 29 29 H 1.08991 * 109.47561 * 90.00216 * 19 18 17 30 30 H 1.09002 * 109.47182 * 210.00122 * 19 18 17 31 31 H 1.09000 * 109.47036 * 329.99727 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2305 5 1 2.6533 -1.5884 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 2.1380 -0.8586 3.5567 8 14 0.6258 1.2800 2.6540 9 1 -0.8021 0.8747 2.6993 10 1 0.9771 1.9957 3.9069 11 1 0.8490 2.1775 1.4921 12 7 2.0183 -0.6907 -1.1961 13 16 2.4187 0.1776 -2.5481 14 8 2.8887 -0.7627 -3.5042 15 8 1.3322 1.0598 -2.7947 16 6 3.7972 1.1913 -2.1279 17 6 5.0941 0.8519 -2.2484 18 7 5.8273 1.9247 -1.8126 19 6 7.2885 2.0156 -1.7604 20 6 4.9503 2.8827 -1.4402 21 17 5.3663 4.4469 -0.8125 22 7 3.7377 2.4386 -1.6362 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.9034 -0.5274 4.4376 27 1 2.1110 -1.6563 -1.1946 28 1 5.4825 -0.0857 -2.6177 29 1 7.6613 2.4188 -2.7018 30 1 7.5826 2.6727 -0.9419 31 1 7.7087 1.0231 -1.5984 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123817076.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:05 Heat of formation + Delta-G solvation = -8.593892 kcal Electronic energy + Delta-G solvation = -19791.212386 eV Core-core repulsion = 16455.485777 eV Total energy + Delta-G solvation = -3335.726609 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.039 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.27711 -37.12193 -36.76288 -35.62773 -35.33771 -34.43309 -32.19239 -29.81511 -29.14736 -27.49155 -25.06401 -22.56190 -21.59470 -20.98429 -19.09639 -18.09453 -17.41515 -16.41042 -15.98620 -15.85530 -15.69845 -15.21916 -14.66045 -14.28861 -13.54282 -13.52321 -13.16386 -13.01494 -12.37213 -12.13341 -12.09135 -11.82981 -11.73313 -11.60847 -11.51187 -11.30272 -11.17340 -10.60296 -10.24717 -10.14218 -10.07257 -9.50797 -9.31598 -8.90363 -8.79387 -8.45320 -6.16476 -4.18021 0.91267 1.11873 1.47986 2.43652 2.61863 3.28334 3.39335 3.45272 3.68223 4.20542 4.24018 4.36559 4.45100 4.72590 4.81759 5.01822 5.17413 5.34529 5.69051 5.92007 6.10690 6.33945 6.50801 6.61176 6.70655 7.06284 7.31905 7.45142 7.49578 7.90665 8.41486 8.84184 9.44318 10.95703 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.013772 B = 0.007425 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.629750 B = 3770.093479 C = 4799.870139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.245 3.755 3 H 0.048 0.952 4 C -0.526 4.526 5 H 0.082 0.918 6 C 0.077 3.923 7 N -0.895 5.895 8 Si 0.876 3.124 9 H -0.274 1.274 10 H -0.295 1.295 11 H -0.257 1.257 12 N -1.087 6.087 13 S 2.722 3.278 14 O -0.975 6.975 15 O -0.946 6.946 16 C -0.539 4.539 17 C 0.084 3.916 18 N -0.446 5.446 19 C 0.062 3.938 20 C 0.239 3.761 21 Cl 0.040 6.960 22 N -0.379 5.379 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.266 0.734 27 H 0.414 0.586 28 H 0.204 0.796 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.831 5.727 -10.385 16.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.139 3.861 3 H 0.066 0.934 4 C -0.565 4.565 5 H 0.100 0.900 6 C -0.127 4.127 7 N -0.532 5.532 8 Si 0.706 3.294 9 H -0.201 1.201 10 H -0.223 1.223 11 H -0.182 1.182 12 N -0.849 5.849 13 S 2.804 3.196 14 O -0.964 6.964 15 O -0.936 6.936 16 C -0.748 4.748 17 C -0.056 4.056 18 N -0.130 5.130 19 C -0.080 4.080 20 C -0.051 4.051 21 Cl 0.067 6.933 22 N -0.098 5.098 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.249 0.751 28 H 0.221 0.779 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.920 6.555 -10.755 16.033 hybrid contribution 1.031 0.432 0.859 1.410 sum 10.951 6.987 -9.896 16.330 Atomic orbital electron populations 1.22584 0.98853 1.01513 0.99967 1.18937 0.90643 0.93202 0.83333 0.93409 1.21113 1.32835 1.14274 0.88322 0.90009 1.24868 0.95517 0.96655 0.95642 1.69868 1.45163 1.40199 0.97983 0.87010 0.80869 0.83878 0.77667 1.20083 1.22261 1.18176 1.55322 1.80047 1.18569 1.30942 1.01249 0.73044 0.72710 0.72555 1.93549 1.82729 1.61267 1.58889 1.93566 1.49701 1.66661 1.83676 1.33812 1.15221 1.06013 1.19763 1.22700 0.90531 0.92843 0.99538 1.45486 1.08337 1.12360 1.46832 1.22297 0.75403 1.05684 1.04615 1.23474 0.85972 0.88746 1.06866 1.98414 1.92386 1.17883 1.84618 1.70335 1.18772 1.07842 1.12877 0.93319 0.92326 0.93443 0.92430 0.75118 0.77913 0.89518 0.88736 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.84 9.00 37.16 0.33 -3.51 16 2 C 0.24 5.76 2.35 -69.09 -0.16 5.60 16 3 H 0.05 1.19 6.89 -51.92 -0.36 0.83 16 4 C -0.53 -14.13 9.34 -34.44 -0.32 -14.46 16 5 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 7 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 8 Si 0.88 21.83 24.37 -169.99 -4.14 17.69 16 9 H -0.27 -6.61 6.87 56.52 0.39 -6.22 16 10 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 12 N -1.09 -21.32 5.46 -5.88 -0.03 -21.35 16 13 S 2.72 50.86 5.80 -107.50 -0.62 50.24 16 14 O -0.97 -17.79 17.84 -57.17 -1.02 -18.81 16 15 O -0.95 -20.49 17.31 -57.17 -0.99 -21.48 16 16 C -0.54 -9.64 6.94 -17.80 -0.12 -9.76 16 17 C 0.08 1.17 11.31 -16.50 -0.19 0.98 16 18 N -0.45 -5.66 3.16 -122.38 -0.39 -6.05 16 19 C 0.06 0.43 11.01 59.84 0.66 1.09 16 20 C 0.24 3.79 8.51 -90.21 -0.77 3.02 16 21 Cl 0.04 0.51 28.77 -51.86 -1.49 -0.99 16 22 N -0.38 -7.35 11.26 -10.94 -0.12 -7.48 16 23 H 0.05 1.03 7.67 -51.93 -0.40 0.63 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 26 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.41 7.20 8.83 -34.47 -0.30 6.89 16 28 H 0.20 1.99 8.06 -52.49 -0.42 1.57 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.58 7.81 -51.93 -0.41 0.18 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 295.67 15.07 4.46 4.46 Total: -1.00 -35.50 295.67 -7.18 -42.68 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -2.93 Total: 1.79 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -0.67 Total: -14.98 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: 0.23 Total: -60.59 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -2.01 Total: -40.30 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.14 Total: 17.69 kcal Atomic # 16 Polarization: 50.86 SS G_CDS: -0.62 Total: 50.24 kcal Atomic # 17 Polarization: 0.51 SS G_CDS: -1.49 Total: -0.99 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -35.50 -7.18 -42.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123817076.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.086 kcal (2) G-P(sol) polarization free energy of solvation -35.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds