Wall clock time and date at job start Tue Mar 31 2020 03:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21303 * 120.00350 * 2 1 4 4 C 1.46766 * 119.99857 * 179.97438 * 2 1 3 5 5 C 1.40003 * 120.22906 * 275.00213 * 4 2 1 6 6 C 1.50694 * 120.05487 * 359.95827 * 5 4 2 7 7 C 1.37684 * 119.89224 * 179.97438 * 5 4 2 8 8 C 1.38651 * 120.36844 * 0.02699 * 7 5 4 9 9 C 1.38016 * 120.46856 * 359.67063 * 8 7 5 10 10 C 1.38837 * 120.09613 * 0.60635 * 9 8 7 11 11 N 1.39144 * 120.18643 * 179.69695 * 10 9 8 12 12 C 1.34780 * 119.99846 * 24.85741 * 11 10 9 13 13 O 1.21277 * 119.99990 * 5.52750 * 12 11 10 14 14 C 1.50702 * 120.00068 * 185.52694 * 12 11 10 15 15 S 1.80997 * 109.47219 * 180.02562 * 14 12 11 16 16 C 1.76198 * 99.99963 * 179.97438 * 15 14 12 17 17 H 1.08007 * 120.00100 * 0.02562 * 16 15 14 18 18 C 1.38799 * 120.00029 * 179.97438 * 16 15 14 19 19 N 1.31630 * 119.99904 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99935 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47312 * 60.00316 * 20 18 16 22 22 H 1.48503 * 109.46981 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47110 * 299.99739 * 20 18 16 24 24 H 1.08999 * 109.47686 * 265.00597 * 1 2 3 25 25 H 1.09008 * 109.46986 * 24.99936 * 1 2 3 26 26 H 1.08994 * 109.47090 * 144.99313 * 1 2 3 27 27 H 1.09002 * 109.47205 * 94.96983 * 6 5 4 28 28 H 1.08996 * 109.46966 * 214.96944 * 6 5 4 29 29 H 1.09001 * 109.47143 * 334.96735 * 6 5 4 30 30 H 1.07993 * 119.81929 * 180.02562 * 7 5 4 31 31 H 1.07995 * 119.76653 * 180.02562 * 8 7 5 32 32 H 1.08003 * 119.95326 * 180.32019 * 9 8 7 33 33 H 0.97008 * 120.00373 * 204.59030 * 11 10 9 34 34 H 1.09000 * 109.47119 * 300.00364 * 14 12 11 35 35 H 1.09004 * 109.47194 * 59.99583 * 14 12 11 36 36 H 0.97006 * 119.99752 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2408 -1.2711 0.0006 5 6 2.5018 -1.9337 1.2059 6 6 2.0303 -1.3428 2.5095 7 6 3.1904 -3.1260 1.1983 8 6 3.6280 -3.6751 0.0028 9 6 3.3735 -3.0379 -1.1947 10 6 2.6859 -1.8318 -1.2091 11 7 2.4338 -1.1846 -2.4148 12 6 2.3824 -1.8914 -3.5612 13 8 2.4556 -3.1016 -3.5312 14 6 2.2339 -1.1780 -4.8803 15 16 2.1955 -2.3923 -6.2220 16 6 2.0199 -1.3147 -7.6050 17 1 1.9702 -0.2463 -7.4543 18 6 1.9466 -1.8387 -8.8882 19 7 2.0077 -3.1407 -9.0719 20 14 1.7611 -0.6962 -10.3544 21 1 2.9210 0.2293 -10.4107 22 1 1.7061 -1.4982 -11.6030 23 1 0.5080 0.0884 -10.2151 24 1 -0.3634 -0.0895 1.0237 25 1 -0.3633 0.9315 -0.4343 26 1 -0.3633 -0.8417 -0.5895 27 1 1.0683 -1.7786 2.7792 28 1 2.7589 -1.5588 3.2909 29 1 1.9228 -0.2635 2.4014 30 1 3.3907 -3.6363 2.1287 31 1 4.1668 -4.6110 0.0081 32 1 3.7137 -3.4757 -2.1215 33 1 2.2912 -0.2251 -2.4298 34 1 1.3059 -0.6061 -4.8817 35 1 3.0770 -0.5025 -5.0250 36 1 1.9560 -3.5069 -9.9686 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157843584.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:46 Heat of formation + Delta-G solvation = -71.745349 kcal Electronic energy + Delta-G solvation = -20288.814933 eV Core-core repulsion = 17056.323064 eV Total energy + Delta-G solvation = -3232.491869 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.05024 -40.56692 -39.11368 -36.21682 -34.61058 -33.77068 -32.35291 -30.96371 -29.71986 -27.96478 -27.66560 -24.57620 -23.63772 -21.42165 -20.94507 -19.91663 -18.65559 -18.03870 -17.69886 -16.96998 -16.89727 -16.41272 -16.27485 -16.13784 -15.58251 -15.14103 -15.06409 -14.63406 -14.57058 -14.34110 -13.95764 -13.41046 -13.23794 -13.20784 -13.17491 -13.07094 -12.88699 -12.75673 -12.63025 -12.49218 -11.79648 -11.63783 -11.15095 -10.99588 -10.84674 -10.35575 -9.76959 -9.16927 -8.70470 -8.37380 -6.16012 0.02508 0.26309 0.67519 1.16361 1.40764 1.41949 1.43192 1.53016 1.98407 2.24043 2.64286 2.97150 2.97307 3.20543 3.63105 3.75586 3.93106 4.07810 4.16767 4.27277 4.31960 4.39391 4.41824 4.51733 4.56108 4.65982 4.78952 4.81212 5.02506 5.09761 5.16682 5.32496 5.39721 5.45053 5.52399 5.94459 6.10951 6.17217 6.25422 6.86903 7.04261 8.71477 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.027946 B = 0.003397 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.703703 B = 8240.576650 C = 8991.955495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.414 3.586 3 O -0.481 6.481 4 C -0.207 4.207 5 C -0.036 4.036 6 C -0.118 4.118 7 C -0.137 4.137 8 C -0.079 4.079 9 C -0.166 4.166 10 C 0.171 3.829 11 N -0.662 5.662 12 C 0.539 3.461 13 O -0.524 6.524 14 C -0.133 4.133 15 S -0.135 6.135 16 C -0.551 4.551 17 H 0.083 0.917 18 C 0.016 3.984 19 N -0.910 5.910 20 Si 0.997 3.003 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.262 1.262 24 H 0.128 0.872 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.162 0.838 31 H 0.148 0.852 32 H 0.125 0.875 33 H 0.419 0.581 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.966 5.180 23.826 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.292 3.708 3 O -0.357 6.357 4 C -0.210 4.210 5 C -0.037 4.037 6 C -0.175 4.175 7 C -0.156 4.156 8 C -0.098 4.098 9 C -0.186 4.186 10 C 0.075 3.925 11 N -0.306 5.306 12 C 0.327 3.673 13 O -0.399 6.399 14 C -0.284 4.284 15 S 0.092 5.908 16 C -0.699 4.699 17 H 0.101 0.899 18 C -0.189 4.189 19 N -0.546 5.546 20 Si 0.819 3.181 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.186 1.186 24 H 0.146 0.854 25 H 0.115 0.885 26 H 0.110 0.890 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.180 0.820 31 H 0.166 0.834 32 H 0.142 0.858 33 H 0.256 0.744 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.528 3.618 23.666 23.990 hybrid contribution -0.056 1.978 -1.468 2.464 sum -1.584 5.596 22.198 22.947 Atomic orbital electron populations 1.22361 0.90479 1.05779 1.06814 1.22832 0.93344 0.86480 0.68194 1.90596 1.73321 1.35006 1.36735 1.20213 1.07212 1.00398 0.93223 1.20056 0.95900 0.94146 0.93619 1.20967 1.03630 1.00167 0.92698 1.21271 0.99660 0.95582 0.99067 1.21476 0.97274 0.99817 0.91219 1.21394 1.00768 0.95991 1.00463 1.17817 0.96246 0.94290 0.84138 1.43289 1.70434 1.12092 1.04829 1.20266 0.74727 0.87312 0.85031 1.90676 1.47324 1.15030 1.86833 1.23399 1.07218 1.03503 0.94324 1.85503 1.96202 1.11555 0.97512 1.23184 1.58599 0.95091 0.93023 0.89867 1.26096 0.93720 0.97259 1.01807 1.70160 1.47637 1.13006 1.23780 0.85020 0.79463 0.77687 0.75948 1.18789 1.20320 1.18614 0.85438 0.88488 0.89006 0.88175 0.88780 0.92431 0.82020 0.83392 0.85753 0.74365 0.86560 0.86939 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.72 10.22 71.23 0.73 -1.99 16 2 C 0.41 8.72 3.99 27.92 0.11 8.83 16 3 O -0.48 -12.93 17.86 -3.10 -0.06 -12.98 16 4 C -0.21 -4.80 5.56 -20.05 -0.11 -4.91 16 5 C -0.04 -0.67 5.92 -19.57 -0.12 -0.78 16 6 C -0.12 -1.31 9.70 71.23 0.69 -0.62 16 7 C -0.14 -2.36 9.69 22.24 0.22 -2.14 16 8 C -0.08 -1.75 10.03 22.32 0.22 -1.52 16 9 C -0.17 -4.93 8.70 22.36 0.19 -4.74 16 10 C 0.17 4.90 6.44 38.69 0.25 5.15 16 11 N -0.66 -19.42 5.15 -302.83 -1.56 -20.98 16 12 C 0.54 19.97 7.65 87.66 0.67 20.64 16 13 O -0.52 -23.14 13.02 -3.02 -0.04 -23.18 16 14 C -0.13 -5.23 6.16 71.24 0.44 -4.79 16 15 S -0.13 -7.31 20.57 -56.49 -1.16 -8.47 16 16 C -0.55 -31.06 9.50 67.95 0.65 -30.42 16 17 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 18 C 0.02 0.92 5.49 84.86 0.47 1.39 16 19 N -0.91 -55.14 13.22 21.65 0.29 -54.85 16 20 Si 1.00 43.15 29.55 68.60 2.03 45.18 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.09 0.73 8.12 -2.39 -0.02 0.71 16 29 H 0.06 0.73 6.92 -2.39 -0.02 0.72 16 30 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 31 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.12 4.44 5.78 -2.91 -0.02 4.42 16 33 H 0.42 10.36 7.90 -92.70 -0.73 9.63 16 34 H 0.12 4.04 8.14 -2.40 -0.02 4.02 16 35 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 36 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -75.94 329.53 4.28 -71.66 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.38 Total: 19.55 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: 4.41 Total: -15.92 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -1.27 Total: -75.83 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -0.09 Total: -36.16 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -7.31 SS G_CDS: -1.16 Total: -8.47 kcal Total: -75.94 4.28 -71.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157843584.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.086 kcal (2) G-P(sol) polarization free energy of solvation -75.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds