Wall clock time and date at job start Tue Mar 31 2020 03:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35512 * 116.99699 * 2 1 4 4 C 1.39477 * 120.46656 * 179.97438 * 3 2 1 5 5 C 1.38239 * 118.50252 * 180.02562 * 4 3 2 6 6 N 1.32435 * 119.26640 * 359.75149 * 5 4 3 7 7 C 1.32480 * 120.88712 * 0.50608 * 6 5 4 8 8 S 1.76197 * 119.18133 * 179.76388 * 7 6 5 9 9 C 1.76208 * 99.99904 * 359.72572 * 8 7 6 10 10 N 1.32306 * 126.25288 * 0.02562 * 9 8 7 11 11 N 1.28515 * 110.20373 * 179.97438 * 10 9 8 12 12 C 1.33115 * 109.73621 * 0.02562 * 11 10 9 13 13 C 1.39779 * 126.56701 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99362 * 188.21997 * 13 12 11 15 15 C 1.40084 * 120.00440 * 8.21721 * 13 12 11 16 16 N 1.30807 * 119.99790 * 191.22938 * 15 13 12 17 17 Si 1.86794 * 119.99752 * 11.22426 * 15 13 12 18 18 H 1.48498 * 109.47692 * 270.00062 * 17 15 13 19 19 H 1.48501 * 109.47270 * 30.00445 * 17 15 13 20 20 H 1.48501 * 109.47002 * 149.99887 * 17 15 13 21 21 N 1.36666 * 126.24917 * 180.31766 * 9 8 7 22 22 C 1.46498 * 127.14813 * 359.97438 * 21 9 8 23 23 N 1.32503 * 121.63466 * 359.48025 * 7 6 5 24 24 H 1.08996 * 109.46935 * 300.00030 * 1 2 3 25 25 H 1.08998 * 109.47135 * 60.00038 * 1 2 3 26 26 H 1.09001 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.74525 * 359.97438 * 4 3 2 28 28 H 1.07992 * 120.36540 * 180.02562 * 5 4 3 29 29 H 0.96998 * 120.00623 * 354.77763 * 16 15 13 30 30 H 1.08996 * 109.47469 * 270.16066 * 22 21 9 31 31 H 1.08998 * 109.47519 * 30.17146 * 22 21 9 32 32 H 1.09003 * 109.46710 * 150.16390 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4364 1.2919 0.0005 5 6 4.0213 2.5444 0.0011 6 7 3.2485 3.6199 -0.0040 7 6 1.9284 3.5087 0.0006 8 16 0.9433 4.9696 -0.0001 9 6 2.2110 6.1935 0.0009 10 7 3.5149 5.9693 0.0014 11 7 4.1567 7.0827 0.0015 12 6 3.2956 8.0979 0.0017 13 6 3.6131 9.4591 0.0024 14 1 2.8341 10.1952 0.1362 15 6 4.9415 9.8687 -0.1704 16 7 5.2753 11.1147 0.0470 17 14 6.2362 8.6356 -0.7112 18 1 6.8478 8.0031 0.4851 19 1 5.6025 7.5902 -1.5544 20 1 7.2875 9.3331 -1.4944 21 7 2.0269 7.5476 0.0069 22 6 0.7506 8.2669 0.0132 23 7 1.3305 2.3263 0.0000 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 4.0437 0.3988 0.0014 28 1 5.0966 2.6448 0.0011 29 1 4.5917 11.7710 0.2539 30 1 0.4299 8.4470 -1.0128 31 1 -0.0008 7.6693 0.5293 32 1 0.8732 9.2198 0.5281 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280297210.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:50 Heat of formation + Delta-G solvation = 94.156859 kcal Electronic energy + Delta-G solvation = -20383.273289 eV Core-core repulsion = 17086.727888 eV Total energy + Delta-G solvation = -3296.545402 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.92829 -40.88337 -38.41302 -33.93283 -33.57782 -33.10099 -31.72190 -29.93731 -27.67725 -26.74101 -25.39761 -24.38992 -23.58755 -21.41847 -20.28506 -19.05793 -18.20794 -17.97935 -16.62551 -16.27742 -15.59765 -15.23022 -15.08462 -14.77782 -14.63190 -14.24598 -13.76250 -13.57911 -13.23685 -12.75867 -12.59105 -12.18747 -12.01367 -11.79977 -11.46844 -11.02381 -10.77431 -10.48270 -10.46422 -9.91991 -9.68414 -9.53125 -9.28215 -8.96241 -8.76418 -8.56897 -8.36877 -7.45719 -7.19033 -4.84616 0.89171 1.32332 1.34323 2.23958 2.86609 2.91385 3.54147 3.63099 3.84561 3.89807 4.02804 4.18042 4.25082 4.39459 4.82831 4.94024 5.08215 5.11107 5.12528 5.27140 5.32777 5.38937 5.49131 5.69571 5.87257 6.20386 6.44930 6.69942 6.85464 7.11436 7.15066 7.39104 7.58301 8.04675 8.10574 8.35781 8.55729 9.95262 10.20223 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.028093 B = 0.004553 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.462200 B = 6147.777631 C = 7095.690072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.303 6.303 3 C 0.364 3.636 4 C -0.258 4.258 5 C 0.186 3.814 6 N -0.468 5.468 7 C 0.316 3.684 8 S 0.206 5.794 9 C 0.006 3.994 10 N -0.187 5.187 11 N -0.414 5.414 12 C 0.347 3.653 13 C -0.492 4.492 14 H 0.083 0.917 15 C 0.066 3.934 16 N -0.806 5.806 17 Si 1.105 2.895 18 H -0.276 1.276 19 H -0.254 1.254 20 H -0.312 1.312 21 N -0.514 5.514 22 C 0.100 3.900 23 N -0.567 5.567 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.097 0.903 27 H 0.149 0.851 28 H 0.176 0.824 29 H 0.284 0.716 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.211 -14.884 -0.431 17.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.208 6.208 3 C 0.174 3.826 4 C -0.285 4.285 5 C 0.018 3.982 6 N -0.187 5.187 7 C -0.060 4.060 8 S 0.441 5.559 9 C -0.366 4.366 10 N -0.031 5.031 11 N -0.266 5.266 12 C 0.105 3.895 13 C -0.532 4.532 14 H 0.101 0.899 15 C -0.157 4.157 16 N -0.430 5.430 17 Si 0.932 3.068 18 H -0.202 1.202 19 H -0.179 1.179 20 H -0.242 1.242 21 N -0.216 5.216 22 C -0.045 4.045 23 N -0.301 5.301 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.115 0.885 27 H 0.167 0.833 28 H 0.193 0.807 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.113 -15.005 -0.686 17.072 hybrid contribution -1.537 0.316 0.478 1.640 sum -9.649 -14.690 -0.208 17.577 Atomic orbital electron populations 1.22918 0.76995 1.03019 1.02863 1.86230 1.23178 1.24004 1.87386 1.19939 0.89610 0.84406 0.88654 1.21905 0.92523 1.01270 1.12786 1.23330 1.01240 0.86206 0.87385 1.69659 1.03025 1.31555 1.14475 1.24682 0.91959 0.94895 0.94495 1.83278 0.99428 0.85772 1.87421 1.25367 0.98451 0.86264 1.26491 1.74850 0.98589 1.19123 1.10519 1.74388 1.23610 0.94098 1.34501 1.21697 0.78480 0.95744 0.93612 1.19396 0.97308 0.87977 1.48544 0.89931 1.27335 0.99379 0.99342 0.89616 1.70655 1.38221 1.03338 1.30770 0.82909 0.72371 0.72546 0.78952 1.20214 1.17860 1.24176 1.45823 1.07211 1.03629 1.64943 1.21554 0.83449 0.97473 1.02037 1.67923 1.40874 0.97773 1.23505 0.92042 0.92028 0.88482 0.83318 0.80658 0.90491 0.92065 0.91477 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.41 101.05 1.05 1.40 16 2 O -0.30 -3.74 10.49 -18.23 -0.19 -3.93 16 3 C 0.36 5.26 7.53 -16.71 -0.13 5.14 16 4 C -0.26 -3.37 10.12 -39.12 -0.40 -3.76 16 5 C 0.19 2.80 11.29 -17.29 -0.20 2.61 16 6 N -0.47 -9.07 7.14 -13.53 -0.10 -9.17 16 7 C 0.32 5.80 7.84 -90.95 -0.71 5.09 16 8 S 0.21 3.66 22.18 -107.50 -2.38 1.27 16 9 C 0.01 0.13 8.04 -87.35 -0.70 -0.57 16 10 N -0.19 -4.81 9.30 30.88 0.29 -4.52 16 11 N -0.41 -11.42 7.50 31.25 0.23 -11.18 16 12 C 0.35 9.14 7.21 -154.85 -1.12 8.02 16 13 C -0.49 -13.03 9.47 -38.31 -0.36 -13.39 16 14 H 0.08 2.12 7.46 -52.48 -0.39 1.72 16 15 C 0.07 1.77 5.52 -17.30 -0.10 1.68 16 16 N -0.81 -21.48 13.65 55.56 0.76 -20.72 16 17 Si 1.10 27.43 26.40 -169.99 -4.49 22.95 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.25 -6.57 6.25 56.52 0.35 -6.21 16 20 H -0.31 -7.43 7.11 56.52 0.40 -7.03 16 21 N -0.51 -11.74 3.26 -123.21 -0.40 -12.14 16 22 C 0.10 1.70 10.89 59.85 0.65 2.35 16 23 N -0.57 -9.20 9.34 -13.51 -0.13 -9.32 16 24 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 25 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 26 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 28 H 0.18 2.14 8.06 -52.49 -0.42 1.72 16 29 H 0.28 7.18 8.73 -40.82 -0.36 6.82 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 32 H 0.08 1.33 7.47 -51.93 -0.39 0.95 16 LS Contribution 298.18 15.07 4.49 4.49 Total: -1.00 -32.84 298.18 -6.84 -39.68 By element: Atomic # 1 Polarization: -3.03 SS G_CDS: -2.92 Total: -5.95 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -2.00 Total: 8.56 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: 0.66 Total: -67.06 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -0.19 Total: -3.93 kcal Atomic # 14 Polarization: 27.43 SS G_CDS: -4.49 Total: 22.95 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -2.38 Total: 1.27 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.84 -6.84 -39.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280297210.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.837 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds