Wall clock time and date at job start Tue Mar 31 2020 03:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35512 * 116.99699 * 2 1 4 4 C 1.39477 * 120.46656 * 179.97438 * 3 2 1 5 5 C 1.38239 * 118.50252 * 180.02562 * 4 3 2 6 6 N 1.32435 * 119.26640 * 359.75149 * 5 4 3 7 7 C 1.32480 * 120.88712 * 0.50608 * 6 5 4 8 8 S 1.76197 * 119.18133 * 179.76388 * 7 6 5 9 9 C 1.76208 * 99.99904 * 359.72572 * 8 7 6 10 10 N 1.32306 * 126.25288 * 0.02562 * 9 8 7 11 11 N 1.28515 * 110.20373 * 179.97438 * 10 9 8 12 12 C 1.33115 * 109.73621 * 0.02562 * 11 10 9 13 13 C 1.39779 * 126.56701 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99362 * 188.21997 * 13 12 11 15 15 C 1.40084 * 120.00440 * 8.21721 * 13 12 11 16 16 N 1.30807 * 119.99790 * 191.22938 * 15 13 12 17 17 Si 1.86794 * 119.99752 * 11.22426 * 15 13 12 18 18 H 1.48498 * 109.47692 * 270.00062 * 17 15 13 19 19 H 1.48501 * 109.47270 * 30.00445 * 17 15 13 20 20 H 1.48501 * 109.47002 * 149.99887 * 17 15 13 21 21 N 1.36666 * 126.24917 * 180.31766 * 9 8 7 22 22 C 1.46498 * 127.14813 * 359.97438 * 21 9 8 23 23 N 1.32503 * 121.63466 * 359.48025 * 7 6 5 24 24 H 1.08996 * 109.46935 * 300.00030 * 1 2 3 25 25 H 1.08998 * 109.47135 * 60.00038 * 1 2 3 26 26 H 1.09001 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.74525 * 359.97438 * 4 3 2 28 28 H 1.07992 * 120.36540 * 180.02562 * 5 4 3 29 29 H 0.96998 * 120.00623 * 354.77763 * 16 15 13 30 30 H 1.08996 * 109.47469 * 270.16066 * 22 21 9 31 31 H 1.08998 * 109.47519 * 30.17146 * 22 21 9 32 32 H 1.09003 * 109.46710 * 150.16390 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4364 1.2919 0.0005 5 6 4.0213 2.5444 0.0011 6 7 3.2485 3.6199 -0.0040 7 6 1.9284 3.5087 0.0006 8 16 0.9433 4.9696 -0.0001 9 6 2.2110 6.1935 0.0009 10 7 3.5149 5.9693 0.0014 11 7 4.1567 7.0827 0.0015 12 6 3.2956 8.0979 0.0017 13 6 3.6131 9.4591 0.0024 14 1 2.8341 10.1952 0.1362 15 6 4.9415 9.8687 -0.1704 16 7 5.2753 11.1147 0.0470 17 14 6.2362 8.6356 -0.7112 18 1 6.8478 8.0031 0.4851 19 1 5.6025 7.5902 -1.5544 20 1 7.2875 9.3331 -1.4944 21 7 2.0269 7.5476 0.0069 22 6 0.7506 8.2669 0.0132 23 7 1.3305 2.3263 0.0000 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 4.0437 0.3988 0.0014 28 1 5.0966 2.6448 0.0011 29 1 4.5917 11.7710 0.2539 30 1 0.4299 8.4470 -1.0128 31 1 -0.0008 7.6693 0.5293 32 1 0.8732 9.2198 0.5281 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280297210.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:49 Heat of formation + Delta-G solvation = 71.754674 kcal Electronic energy + Delta-G solvation = -20384.244721 eV Core-core repulsion = 17086.727888 eV Total energy + Delta-G solvation = -3297.516833 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.75729 -42.08447 -39.44096 -35.88968 -35.33816 -34.31829 -32.90070 -31.83185 -28.61538 -28.29452 -27.17497 -25.65947 -24.73148 -23.26401 -22.11275 -20.21370 -20.13354 -19.23788 -18.02415 -17.30077 -17.14467 -16.80230 -16.37797 -16.30087 -15.75023 -15.61997 -15.41186 -15.11539 -14.74976 -14.51982 -14.12077 -13.57665 -13.10826 -12.98529 -12.87140 -12.73026 -12.53599 -11.91346 -11.76964 -11.71416 -11.34131 -11.30022 -10.91086 -10.59971 -10.32982 -10.17978 -10.14028 -9.46259 -8.76311 -6.81977 -0.31341 -0.10100 0.17221 0.67789 1.03245 1.55117 1.68314 1.89624 2.00481 2.20935 2.25778 2.44621 2.63647 3.09800 3.11068 3.61278 3.92134 3.96044 4.25457 4.37141 4.37966 4.39259 4.43815 4.54479 4.63410 4.73323 4.78066 5.16346 5.29118 5.41043 5.73004 5.78288 6.05091 6.07612 6.44197 6.63278 6.87807 7.95662 8.30001 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.028093 B = 0.004553 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.462200 B = 6147.777631 C = 7095.690072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.301 6.301 3 C 0.354 3.646 4 C -0.233 4.233 5 C 0.172 3.828 6 N -0.512 5.512 7 C 0.289 3.711 8 S 0.256 5.744 9 C 0.021 3.979 10 N -0.223 5.223 11 N -0.445 5.445 12 C 0.327 3.673 13 C -0.509 4.509 14 H 0.083 0.917 15 C 0.044 3.956 16 N -0.824 5.824 17 Si 1.138 2.862 18 H -0.286 1.286 19 H -0.273 1.273 20 H -0.298 1.298 21 N -0.514 5.514 22 C 0.089 3.911 23 N -0.567 5.567 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.133 0.867 27 H 0.187 0.813 28 H 0.197 0.803 29 H 0.286 0.714 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.627 -17.265 -0.507 20.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.206 6.206 3 C 0.164 3.836 4 C -0.259 4.259 5 C 0.006 3.994 6 N -0.232 5.232 7 C -0.088 4.088 8 S 0.490 5.510 9 C -0.353 4.353 10 N -0.066 5.066 11 N -0.295 5.295 12 C 0.081 3.919 13 C -0.550 4.550 14 H 0.101 0.899 15 C -0.176 4.176 16 N -0.449 5.449 17 Si 0.966 3.034 18 H -0.212 1.212 19 H -0.200 1.200 20 H -0.227 1.227 21 N -0.215 5.215 22 C -0.054 4.054 23 N -0.301 5.301 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.151 0.849 27 H 0.204 0.796 28 H 0.214 0.786 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.523 -17.409 -0.763 19.858 hybrid contribution -1.308 0.700 0.508 1.568 sum -10.831 -16.710 -0.255 19.914 Atomic orbital electron populations 1.23203 0.75286 1.05329 1.02544 1.86257 1.24823 1.22532 1.86954 1.20296 0.90416 0.84584 0.88311 1.22259 0.92388 1.01788 1.09475 1.23747 1.02075 0.86194 0.87348 1.69544 1.03833 1.33966 1.15855 1.24711 0.92131 0.95630 0.96302 1.82967 0.96566 0.83827 1.87674 1.26340 0.99319 0.87509 1.22127 1.74822 0.99995 1.18583 1.13155 1.74274 1.25179 0.94959 1.35125 1.21762 0.79961 0.95647 0.94530 1.19386 0.97361 0.88260 1.49947 0.89880 1.27761 1.00347 0.99808 0.89717 1.70651 1.38409 1.03520 1.32369 0.82403 0.71712 0.71235 0.78052 1.21243 1.19964 1.22733 1.46169 1.08082 1.03965 1.63285 1.21957 0.81674 0.97813 1.03928 1.67892 1.41100 0.97695 1.23432 0.92342 0.92333 0.84949 0.79559 0.78580 0.90270 0.90077 0.88296 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.41 113.37 1.18 1.66 16 2 O -0.30 -6.49 10.49 -88.14 -0.92 -7.41 16 3 C 0.35 9.32 7.53 84.86 0.64 9.96 16 4 C -0.23 -5.41 10.12 22.57 0.23 -5.18 16 5 C 0.17 4.91 11.29 84.60 0.95 5.86 16 6 N -0.51 -19.46 7.14 -196.72 -1.41 -20.86 16 7 C 0.29 10.25 7.84 180.46 1.41 11.66 16 8 S 0.26 8.66 22.18 -56.49 -1.25 7.41 16 9 C 0.02 0.93 8.04 179.21 1.44 2.37 16 10 N -0.22 -11.56 9.30 -56.22 -0.52 -12.08 16 11 N -0.44 -24.91 7.50 -55.04 -0.41 -25.32 16 12 C 0.33 17.40 7.21 133.25 0.96 18.36 16 13 C -0.51 -27.35 9.47 23.09 0.22 -27.13 16 14 H 0.08 4.31 7.46 -2.91 -0.02 4.29 16 15 C 0.04 2.38 5.52 85.29 0.47 2.85 16 16 N -0.82 -44.42 13.65 21.85 0.30 -44.12 16 17 Si 1.14 57.16 26.40 68.60 1.81 58.97 16 18 H -0.29 -14.58 7.11 99.48 0.71 -13.88 16 19 H -0.27 -14.51 6.25 99.48 0.62 -13.89 16 20 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 21 N -0.51 -23.10 3.26 -543.74 -1.77 -24.87 16 22 C 0.09 2.85 10.89 127.77 1.39 4.24 16 23 N -0.57 -17.31 9.34 -309.39 -2.89 -20.20 16 24 H 0.06 0.96 8.12 -2.39 -0.02 0.94 16 25 H 0.06 0.96 8.12 -2.39 -0.02 0.94 16 26 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.19 2.84 8.06 -2.91 -0.02 2.82 16 28 H 0.20 4.50 8.06 -2.91 -0.02 4.48 16 29 H 0.29 14.67 8.73 -92.71 -0.81 13.86 16 30 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.10 2.54 7.85 -2.39 -0.02 2.52 16 32 H 0.08 2.67 7.47 -2.39 -0.02 2.65 16 Total: -1.00 -71.88 298.18 2.87 -69.01 By element: Atomic # 1 Polarization: -6.20 SS G_CDS: 1.04 Total: -5.16 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 8.90 Total: 24.64 kcal Atomic # 7 Polarization: -140.75 SS G_CDS: -6.70 Total: -147.45 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.92 Total: -7.41 kcal Atomic # 14 Polarization: 57.16 SS G_CDS: 1.81 Total: 58.97 kcal Atomic # 16 Polarization: 8.66 SS G_CDS: -1.25 Total: 7.41 kcal Total: -71.88 2.87 -69.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280297210.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.762 kcal (2) G-P(sol) polarization free energy of solvation -71.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds