Wall clock time and date at job start Tue Mar 31 2020 03:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46509 * 109.47093 * 152.71017 * 3 2 1 5 5 C 1.37094 * 119.99842 * 263.72671 * 4 3 2 6 6 H 1.07997 * 119.99789 * 142.46277 * 5 4 3 7 7 C 1.38948 * 120.00075 * 322.46856 * 5 4 3 8 8 N 1.31412 * 120.00145 * 157.51237 * 7 5 4 9 9 Si 1.86800 * 120.00161 * 337.50303 * 7 5 4 10 10 H 1.48498 * 109.47072 * 95.71140 * 9 7 5 11 11 H 1.48498 * 109.47351 * 215.71065 * 9 7 5 12 12 H 1.48505 * 109.47074 * 335.71033 * 9 7 5 13 13 C 1.34767 * 119.99965 * 83.73073 * 4 3 2 14 14 O 1.21295 * 120.00407 * 180.02562 * 13 4 3 15 15 C 1.50701 * 120.00299 * 359.97438 * 13 4 3 16 16 N 1.46501 * 109.47296 * 180.02562 * 15 13 4 17 17 C 1.35060 * 125.56503 * 90.02972 * 16 15 13 18 18 O 1.21292 * 127.28763 * 359.97125 * 17 16 15 19 19 C 1.49986 * 105.42983 * 179.97438 * 17 16 15 20 20 O 1.21296 * 127.28685 * 180.02562 * 19 17 16 21 21 N 1.35065 * 105.43344 * 359.97438 * 19 17 16 22 22 C 1.46494 * 125.56781 * 179.73357 * 21 19 17 23 23 C 1.34276 * 125.56694 * 269.97188 * 16 15 13 24 24 O 1.21481 * 124.29921 * 0.07056 * 23 16 15 25 25 H 4.40641 * 5.51484 * 179.97438 * 4 1 2 26 26 H 1.08999 * 109.47222 * 32.70942 * 3 2 1 27 27 H 1.09003 * 109.47077 * 272.70876 * 3 2 1 28 28 H 0.97004 * 120.00498 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.47296 * 60.00337 * 15 13 4 30 30 H 1.08996 * 109.47524 * 300.00763 * 15 13 4 31 31 H 1.08997 * 109.47536 * 0.02691 * 22 21 19 32 32 H 1.09003 * 109.47080 * 120.03038 * 22 21 19 33 33 H 1.09000 * 109.47406 * 240.02668 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1338 1.2284 -0.6333 5 6 3.4845 1.2234 -1.9586 6 1 3.2642 2.0796 -2.5788 7 6 4.1235 0.1166 -2.5039 8 7 4.0708 -0.1007 -3.7989 9 14 5.0576 -1.0625 -1.3964 10 1 4.1806 -2.2066 -1.0399 11 1 6.2600 -1.5638 -2.1092 12 1 5.4748 -0.3544 -0.1595 13 6 3.2377 2.3627 0.0869 14 8 3.6411 3.3794 -0.4374 15 6 2.8516 2.3685 1.5437 16 7 3.0532 3.7098 2.0971 17 6 2.1315 4.6967 2.1204 18 8 0.9960 4.6518 1.6964 19 6 2.8091 5.8601 2.7814 20 8 2.3373 6.9549 3.0055 21 7 4.0554 5.4306 3.0754 22 6 5.0984 6.2248 3.7292 23 6 4.1843 4.1586 2.6649 24 8 5.1959 3.4979 2.7908 25 1 -1.0502 -0.0004 0.0000 26 1 3.0097 -0.8639 -0.5553 27 1 3.0093 -0.0477 1.0265 28 1 4.5172 -0.8732 -4.1797 29 1 3.4708 1.6543 2.0865 30 1 1.8028 2.0888 1.6427 31 1 4.7144 7.2219 3.9447 32 1 5.3943 5.7404 4.6597 33 1 5.9626 6.3032 3.0696 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281581391.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:39 Heat of formation + Delta-G solvation = -1.425250 kcal Electronic energy + Delta-G solvation = -23613.106726 eV Core-core repulsion = 19837.370951 eV Total energy + Delta-G solvation = -3775.735775 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.36990 -39.45522 -39.19061 -38.55040 -36.47905 -35.73026 -35.04332 -32.82273 -31.76841 -30.38528 -27.41784 -26.86246 -25.68762 -24.64871 -22.15667 -21.76477 -19.56434 -18.68078 -18.04001 -17.67778 -17.13629 -16.91924 -16.58288 -16.34510 -15.84616 -15.42943 -15.33293 -14.76380 -14.69467 -14.47316 -13.62005 -13.42603 -13.34844 -13.18067 -12.97256 -12.79512 -12.74744 -12.31275 -11.91219 -11.07982 -11.04934 -10.89691 -10.50898 -10.30557 -10.23173 -10.16280 -9.89634 -9.69457 -9.29284 -8.75078 -8.07257 -6.53657 -4.13384 0.24356 1.68081 1.95640 2.45749 2.56465 2.89555 3.02385 3.08357 3.15055 3.23508 3.42232 3.80014 4.01216 4.25736 4.45482 4.65401 4.86507 5.01120 5.02243 5.07806 5.14105 5.22046 5.29981 5.31597 5.55724 5.63624 5.86770 6.27950 6.47414 6.62708 7.09745 7.31337 7.48430 7.96786 8.06769 8.26677 8.73857 9.10595 9.45006 10.57511 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.020679 B = 0.005340 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.686775 B = 5241.968478 C = 5809.940374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.187 4.187 3 C 0.188 3.812 4 N -0.451 5.451 5 C -0.320 4.320 6 H 0.109 0.891 7 C 0.065 3.935 8 N -0.852 5.852 9 Si 0.864 3.136 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.257 1.257 13 C 0.454 3.546 14 O -0.548 6.548 15 C 0.100 3.900 16 N -0.552 5.552 17 C 0.512 3.488 18 O -0.407 6.407 19 C 0.515 3.485 20 O -0.420 6.420 21 N -0.576 5.576 22 C 0.091 3.909 23 C 0.716 3.284 24 O -0.483 6.483 25 H 0.215 0.785 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.277 0.723 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.009 3.592 16.365 16.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.188 4.188 3 C 0.065 3.935 4 N -0.172 5.172 5 C -0.446 4.446 6 H 0.126 0.874 7 C -0.143 4.143 8 N -0.487 5.487 9 Si 0.690 3.310 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.181 1.181 13 C 0.240 3.760 14 O -0.428 6.428 15 C -0.024 4.024 16 N -0.300 5.300 17 C 0.292 3.708 18 O -0.271 6.271 19 C 0.296 3.704 20 O -0.285 6.285 21 N -0.326 5.326 22 C -0.049 4.049 23 C 0.419 3.581 24 O -0.351 6.351 25 H 0.232 0.768 26 H 0.120 0.880 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.141 0.859 30 H 0.138 0.862 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.019 4.214 15.856 16.438 hybrid contribution 0.366 -0.887 0.226 0.986 sum -0.653 3.327 16.082 16.436 Atomic orbital electron populations 1.24799 0.95708 1.00133 1.01494 1.23632 0.94763 1.00647 0.99793 1.18995 0.84232 0.91522 0.98732 1.43601 1.56322 1.06779 1.10533 1.19023 1.38306 1.05631 0.81666 0.87393 1.25354 0.95984 0.97283 0.95664 1.69751 1.39374 1.28036 1.11530 0.87136 0.80767 0.80862 0.82220 1.19742 1.20610 1.18068 1.20205 0.83067 0.85807 0.86879 1.90605 1.48732 1.32036 1.71467 1.21810 1.05209 0.79849 0.95540 1.46138 1.13405 1.15395 1.55023 1.20758 0.85941 0.84434 0.79650 1.90838 1.15597 1.80120 1.40544 1.20887 0.82191 0.88690 0.78629 1.90817 1.69029 1.20658 1.47977 1.46526 1.15326 1.13760 1.56946 1.21946 0.89229 0.95554 0.98190 1.15784 0.83577 0.81335 0.77430 1.91018 1.28585 1.59060 1.56420 0.76800 0.88023 0.89458 0.91252 0.85928 0.86177 0.88324 0.89736 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.18 19.25 29.55 0.57 -2.61 16 2 C -0.19 -3.36 12.90 -37.12 -0.48 -3.84 16 3 C 0.19 3.57 4.27 -6.82 -0.03 3.54 16 4 N -0.45 -10.52 2.15 -117.93 -0.25 -10.78 16 5 C -0.32 -8.80 9.36 -14.94 -0.14 -8.94 16 6 H 0.11 3.38 7.91 -52.49 -0.42 2.97 16 7 C 0.06 1.72 5.26 -17.47 -0.09 1.63 16 8 N -0.85 -23.90 13.96 55.50 0.77 -23.13 16 9 Si 0.86 19.13 25.05 -169.99 -4.26 14.87 16 10 H -0.27 -5.48 6.69 56.52 0.38 -5.10 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 13 C 0.45 10.19 7.63 -10.99 -0.08 10.11 16 14 O -0.55 -14.42 16.30 5.54 0.09 -14.33 16 15 C 0.10 1.64 4.95 -5.19 -0.03 1.62 16 16 N -0.55 -8.84 2.15 -122.51 -0.26 -9.10 16 17 C 0.51 8.14 8.31 -11.20 -0.09 8.05 16 18 O -0.41 -7.35 17.88 5.55 0.10 -7.25 16 19 C 0.52 7.10 8.31 -11.20 -0.09 7.01 16 20 O -0.42 -6.21 17.65 5.54 0.10 -6.11 16 21 N -0.58 -7.07 3.06 -128.66 -0.39 -7.47 16 22 C 0.09 0.72 10.95 59.84 0.66 1.37 16 23 C 0.72 10.79 8.32 -87.81 -0.73 10.06 16 24 O -0.48 -8.20 17.38 5.38 0.09 -8.11 16 25 H 0.22 2.46 7.80 -54.08 -0.42 2.04 16 26 H 0.10 2.04 3.62 -51.93 -0.19 1.85 16 27 H 0.09 1.29 6.70 -51.93 -0.35 0.94 16 28 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.12 1.67 7.26 -51.93 -0.38 1.29 16 30 H 0.12 1.74 7.43 -51.93 -0.39 1.36 16 31 H 0.10 0.62 7.76 -51.93 -0.40 0.22 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 309.08 15.07 4.66 4.66 Total: -1.00 -34.63 309.08 -2.44 -37.07 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -2.54 Total: 1.68 kcal Atomic # 6 Polarization: 28.54 SS G_CDS: -0.54 Total: 28.00 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -0.14 Total: -50.47 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: 0.38 Total: -35.81 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.26 Total: 14.87 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.63 -2.44 -37.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281581391.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.644 kcal (2) G-P(sol) polarization free energy of solvation -34.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds