Wall clock time and date at job start Tue Mar 31 2020 03:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46509 * 109.47093 * 152.71017 * 3 2 1 5 5 C 1.37094 * 119.99842 * 263.72671 * 4 3 2 6 6 H 1.07997 * 119.99789 * 142.46277 * 5 4 3 7 7 C 1.38948 * 120.00075 * 322.46856 * 5 4 3 8 8 N 1.31412 * 120.00145 * 157.51237 * 7 5 4 9 9 Si 1.86800 * 120.00161 * 337.50303 * 7 5 4 10 10 H 1.48498 * 109.47072 * 95.71140 * 9 7 5 11 11 H 1.48498 * 109.47351 * 215.71065 * 9 7 5 12 12 H 1.48505 * 109.47074 * 335.71033 * 9 7 5 13 13 C 1.34767 * 119.99965 * 83.73073 * 4 3 2 14 14 O 1.21295 * 120.00407 * 180.02562 * 13 4 3 15 15 C 1.50701 * 120.00299 * 359.97438 * 13 4 3 16 16 N 1.46501 * 109.47296 * 180.02562 * 15 13 4 17 17 C 1.35060 * 125.56503 * 90.02972 * 16 15 13 18 18 O 1.21292 * 127.28763 * 359.97125 * 17 16 15 19 19 C 1.49986 * 105.42983 * 179.97438 * 17 16 15 20 20 O 1.21296 * 127.28685 * 180.02562 * 19 17 16 21 21 N 1.35065 * 105.43344 * 359.97438 * 19 17 16 22 22 C 1.46494 * 125.56781 * 179.73357 * 21 19 17 23 23 C 1.34276 * 125.56694 * 269.97188 * 16 15 13 24 24 O 1.21481 * 124.29921 * 0.07056 * 23 16 15 25 25 H 4.40641 * 5.51484 * 179.97438 * 4 1 2 26 26 H 1.08999 * 109.47222 * 32.70942 * 3 2 1 27 27 H 1.09003 * 109.47077 * 272.70876 * 3 2 1 28 28 H 0.97004 * 120.00498 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.47296 * 60.00337 * 15 13 4 30 30 H 1.08996 * 109.47524 * 300.00763 * 15 13 4 31 31 H 1.08997 * 109.47536 * 0.02691 * 22 21 19 32 32 H 1.09003 * 109.47080 * 120.03038 * 22 21 19 33 33 H 1.09000 * 109.47406 * 240.02668 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1338 1.2284 -0.6333 5 6 3.4845 1.2234 -1.9586 6 1 3.2642 2.0796 -2.5788 7 6 4.1235 0.1166 -2.5039 8 7 4.0708 -0.1007 -3.7989 9 14 5.0576 -1.0625 -1.3964 10 1 4.1806 -2.2066 -1.0399 11 1 6.2600 -1.5638 -2.1092 12 1 5.4748 -0.3544 -0.1595 13 6 3.2377 2.3627 0.0869 14 8 3.6411 3.3794 -0.4374 15 6 2.8516 2.3685 1.5437 16 7 3.0532 3.7098 2.0971 17 6 2.1315 4.6967 2.1204 18 8 0.9960 4.6518 1.6964 19 6 2.8091 5.8601 2.7814 20 8 2.3373 6.9549 3.0055 21 7 4.0554 5.4306 3.0754 22 6 5.0984 6.2248 3.7292 23 6 4.1843 4.1586 2.6649 24 8 5.1959 3.4979 2.7908 25 1 -1.0502 -0.0004 0.0000 26 1 3.0097 -0.8639 -0.5553 27 1 3.0093 -0.0477 1.0265 28 1 4.5172 -0.8732 -4.1797 29 1 3.4708 1.6543 2.0865 30 1 1.8028 2.0888 1.6427 31 1 4.7144 7.2219 3.9447 32 1 5.3943 5.7404 4.6597 33 1 5.9626 6.3032 3.0696 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281581391.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:39 Heat of formation + Delta-G solvation = -27.614369 kcal Electronic energy + Delta-G solvation = -23614.242371 eV Core-core repulsion = 19837.370951 eV Total energy + Delta-G solvation = -3776.871421 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.089 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.55243 -40.97506 -40.47768 -39.91582 -37.72407 -37.35645 -36.34054 -34.61070 -33.37491 -31.59398 -28.73135 -28.28272 -26.86157 -26.37097 -23.36998 -22.96690 -21.18138 -20.24687 -19.28822 -18.94894 -18.53718 -18.34127 -17.91926 -17.74940 -17.42700 -16.77028 -16.55915 -16.25992 -15.94597 -15.79389 -15.27749 -14.93683 -14.78278 -14.53811 -14.19741 -14.03155 -14.01101 -13.57448 -13.43302 -12.82957 -12.66174 -12.29428 -12.04429 -11.84547 -11.46877 -11.37947 -11.20653 -11.15182 -11.02575 -10.47669 -9.99853 -8.56962 -6.23614 -0.96010 0.53183 0.82424 1.17908 1.30621 1.31109 1.34913 1.45474 1.58284 1.79108 1.91377 2.15270 2.60385 2.71928 2.86300 3.40605 3.54942 3.61206 3.87433 3.98915 4.03667 4.19383 4.24576 4.40399 4.45819 4.60893 4.77166 5.08720 5.31083 5.41066 5.46134 5.91125 5.95023 6.28052 6.39060 6.71116 6.79082 7.11319 7.60045 8.59591 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.020679 B = 0.005340 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.686775 B = 5241.968478 C = 5809.940374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.239 4.239 3 C 0.184 3.816 4 N -0.461 5.461 5 C -0.340 4.340 6 H 0.043 0.957 7 C 0.017 3.983 8 N -0.903 5.903 9 Si 0.936 3.064 10 H -0.233 1.233 11 H -0.284 1.284 12 H -0.243 1.243 13 C 0.445 3.555 14 O -0.601 6.601 15 C 0.110 3.890 16 N -0.558 5.558 17 C 0.510 3.490 18 O -0.434 6.434 19 C 0.529 3.471 20 O -0.427 6.427 21 N -0.563 5.563 22 C 0.081 3.919 23 C 0.718 3.282 24 O -0.499 6.499 25 H 0.253 0.747 26 H 0.091 0.909 27 H 0.135 0.865 28 H 0.283 0.717 29 H 0.160 0.840 30 H 0.144 0.856 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.993 2.346 19.719 19.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.240 4.240 3 C 0.063 3.937 4 N -0.182 5.182 5 C -0.467 4.467 6 H 0.061 0.939 7 C -0.187 4.187 8 N -0.539 5.539 9 Si 0.757 3.243 10 H -0.157 1.157 11 H -0.210 1.210 12 H -0.166 1.166 13 C 0.234 3.766 14 O -0.485 6.485 15 C -0.014 4.014 16 N -0.305 5.305 17 C 0.291 3.709 18 O -0.300 6.300 19 C 0.309 3.691 20 O -0.293 6.293 21 N -0.312 5.312 22 C -0.057 4.057 23 C 0.422 3.578 24 O -0.369 6.369 25 H 0.269 0.731 26 H 0.109 0.891 27 H 0.153 0.847 28 H 0.093 0.907 29 H 0.178 0.822 30 H 0.162 0.838 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.011 2.968 19.251 19.504 hybrid contribution 0.273 -0.389 -0.879 0.999 sum -0.738 2.578 18.372 18.567 Atomic orbital electron populations 1.25738 0.96586 0.97323 0.99075 1.23665 0.95161 1.03108 1.02089 1.19159 0.85313 0.88709 1.00508 1.43684 1.56633 1.08754 1.09174 1.18557 1.40311 1.04238 0.83613 0.93948 1.26197 0.96010 0.99238 0.97242 1.69870 1.40574 1.29531 1.13935 0.86013 0.79012 0.79230 0.80025 1.15721 1.21027 1.16648 1.21242 0.81496 0.84608 0.89231 1.90567 1.50764 1.33877 1.73273 1.21818 1.07278 0.81111 0.91185 1.46209 1.13934 1.15444 1.54929 1.21160 0.85624 0.85051 0.79060 1.90816 1.16761 1.80698 1.41743 1.20417 0.82459 0.87837 0.78347 1.90824 1.69282 1.20724 1.48422 1.46584 1.15429 1.12866 1.56293 1.22383 0.88244 0.96134 0.98958 1.15854 0.82957 0.81963 0.77061 1.91008 1.28984 1.59685 1.57198 0.73095 0.89130 0.84703 0.90726 0.82223 0.83804 0.86483 0.87302 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.78 19.25 74.32 1.43 -3.35 16 2 C -0.24 -8.05 12.90 31.13 0.40 -7.65 16 3 C 0.18 6.60 4.27 84.57 0.36 6.96 16 4 N -0.46 -21.63 2.15 -645.41 -1.39 -23.02 16 5 C -0.34 -19.66 9.36 84.04 0.79 -18.87 16 6 H 0.04 2.92 7.91 -2.91 -0.02 2.90 16 7 C 0.02 0.91 5.26 84.93 0.45 1.36 16 8 N -0.90 -52.79 13.96 21.66 0.30 -52.49 16 9 Si 0.94 38.93 25.05 68.60 1.72 40.65 16 10 H -0.23 -8.26 6.69 99.48 0.67 -7.60 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.24 -9.52 7.11 99.48 0.71 -8.81 16 13 C 0.45 20.07 7.63 87.66 0.67 20.74 16 14 O -0.60 -32.84 16.30 -3.08 -0.05 -32.89 16 15 C 0.11 3.37 4.95 85.63 0.42 3.80 16 16 N -0.56 -17.00 2.15 -778.32 -1.67 -18.67 16 17 C 0.51 15.75 8.31 87.39 0.73 16.48 16 18 O -0.43 -15.54 17.88 -3.07 -0.05 -15.59 16 19 C 0.53 13.79 8.31 87.39 0.73 14.52 16 20 O -0.43 -11.97 17.65 -3.08 -0.05 -12.02 16 21 N -0.56 -12.65 3.06 -797.77 -2.44 -15.09 16 22 C 0.08 1.05 10.95 127.77 1.40 2.45 16 23 C 0.72 20.28 8.32 179.37 1.49 21.77 16 24 O -0.50 -15.85 17.38 -3.66 -0.06 -15.92 16 25 H 0.25 4.70 7.80 -4.41 -0.03 4.66 16 26 H 0.09 3.41 3.62 -2.39 -0.01 3.40 16 27 H 0.14 3.40 6.70 -2.39 -0.02 3.38 16 28 H 0.28 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.16 3.71 7.26 -2.38 -0.02 3.69 16 30 H 0.14 3.78 7.43 -2.39 -0.02 3.76 16 31 H 0.12 1.13 7.76 -2.39 -0.02 1.11 16 32 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -81.50 309.08 6.29 -75.21 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 1.13 Total: 11.63 kcal Atomic # 6 Polarization: 49.33 SS G_CDS: 8.86 Total: 58.19 kcal Atomic # 7 Polarization: -104.06 SS G_CDS: -5.20 Total: -109.27 kcal Atomic # 8 Polarization: -76.20 SS G_CDS: -0.22 Total: -76.42 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 1.72 Total: 40.65 kcal Total: -81.50 6.29 -75.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281581391.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.598 kcal (2) G-P(sol) polarization free energy of solvation -81.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds