Wall clock time and date at job start Tue Mar 31 2020 03:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00074 * 2 1 4 4 H 1.48504 * 109.46846 * 239.99536 * 3 2 1 5 5 H 1.48496 * 109.47150 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47397 * 119.99674 * 3 2 1 7 7 C 1.38807 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00026 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00065 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47086 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46750 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.46797 * 180.02562 * 12 11 10 14 14 C 1.45466 * 110.99925 * 169.99798 * 13 12 11 15 15 C 1.53173 * 107.19182 * 226.81385 * 14 13 12 16 16 C 1.45669 * 115.13526 * 268.77421 * 15 14 13 17 17 S 1.83550 * 109.73764 * 64.60618 * 16 15 14 18 18 O 1.42100 * 108.60040 * 45.92098 * 17 16 15 19 19 O 1.42095 * 108.59997 * 177.02963 * 17 16 15 20 20 C 1.80121 * 101.75727 * 291.47639 * 17 16 15 21 21 C 1.46727 * 110.99872 * 293.55708 * 13 12 11 22 22 H 0.97000 * 120.00653 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.46606 * 60.00256 * 10 9 7 24 24 H 1.08998 * 109.46976 * 300.00531 * 10 9 7 25 25 H 1.08998 * 109.46855 * 60.00702 * 11 10 9 26 26 H 1.08994 * 109.47109 * 300.00144 * 11 10 9 27 27 H 1.08995 * 109.47310 * 59.99807 * 12 11 10 28 28 H 1.09000 * 109.46767 * 299.99968 * 12 11 10 29 29 H 1.08997 * 109.91229 * 107.39486 * 14 13 12 30 30 H 1.09000 * 109.91285 * 346.23809 * 14 13 12 31 31 H 1.09008 * 108.34815 * 147.31076 * 15 14 13 32 32 H 1.08997 * 108.34988 * 30.24537 * 15 14 13 33 33 H 1.08997 * 109.42700 * 304.52500 * 16 15 14 34 34 H 1.09004 * 109.43123 * 184.68528 * 16 15 14 35 35 H 1.09007 * 108.80280 * 206.21414 * 20 17 16 36 36 H 1.08998 * 108.80931 * 324.47301 * 20 17 16 37 37 H 1.08994 * 108.11200 * 315.77893 * 21 13 12 38 38 H 1.09001 * 108.10788 * 72.43109 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9792 -5.3243 0.0012 12 6 3.1513 -6.3078 0.0018 13 7 2.6362 -7.6834 0.0018 14 6 3.7059 -8.6407 -0.2334 15 6 3.2069 -9.6254 -1.2953 16 6 2.5438 -10.8133 -0.7746 17 16 0.9992 -10.3313 0.0921 18 8 0.2958 -9.4006 -0.7192 19 8 0.3379 -11.5106 0.5292 20 6 1.6426 -9.4651 1.5343 21 6 1.9385 -7.9837 1.2573 22 1 -0.4851 0.8400 -0.0004 23 1 3.1244 -3.7314 0.8906 24 1 3.1244 -3.7313 -0.8894 25 1 1.3705 -5.4846 -0.8886 26 1 1.3709 -5.4840 0.8913 27 1 3.7598 -6.1472 0.8917 28 1 3.7600 -6.1481 -0.8882 29 1 3.9360 -9.1743 0.6887 30 1 4.5943 -8.1231 -0.5954 31 1 4.0592 -9.9436 -1.8958 32 1 2.5092 -9.1013 -1.9484 33 1 3.2078 -11.3223 -0.0760 34 1 2.3026 -11.4846 -1.5988 35 1 0.9114 -9.5328 2.3399 36 1 2.5626 -9.9532 1.8559 37 1 2.5409 -7.5988 2.0800 38 1 0.9902 -7.4464 1.2547 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332058050.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:28 Heat of formation + Delta-G solvation = -70.117626 kcal Electronic energy + Delta-G solvation = -19523.608986 eV Core-core repulsion = 16426.631652 eV Total energy + Delta-G solvation = -3096.977334 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.091 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -39.13740 -37.02039 -36.08889 -34.91461 -33.04053 -32.40906 -31.01968 -27.20186 -25.65702 -24.90742 -23.40251 -21.19024 -20.65535 -18.82786 -17.47114 -17.18875 -17.04410 -16.18610 -15.90180 -15.22915 -14.92174 -14.78980 -14.46117 -14.40579 -13.87027 -13.77345 -13.10089 -12.97930 -12.71067 -12.21279 -12.19037 -12.04732 -11.95748 -11.66215 -11.49346 -11.38478 -11.24294 -11.03651 -10.92436 -10.78423 -10.61574 -10.38768 -10.27455 -9.52412 -9.03557 -8.53203 -8.27124 -6.50181 -6.20589 -3.90800 -0.18389 2.47897 3.21734 3.23892 3.28683 3.42850 3.49237 3.68263 3.72521 4.20872 4.24585 4.33676 4.35550 4.54583 4.79335 4.92093 5.00011 5.10100 5.14897 5.18341 5.32268 5.39204 5.47426 5.50693 5.55984 5.67950 5.71621 5.89081 5.93971 6.04550 6.34947 6.58798 6.72340 6.84934 6.93280 7.61631 8.37927 9.25236 10.87482 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.038398 B = 0.002922 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.030182 B = 9578.572445 C = 9928.830122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.071 0.929 9 S -0.130 6.130 10 C -0.113 4.113 11 C -0.098 4.098 12 C 0.064 3.936 13 N -0.534 5.534 14 C 0.030 3.970 15 C -0.120 4.120 16 C -0.579 4.579 17 S 2.415 3.585 18 O -0.907 6.907 19 O -0.952 6.952 20 C -0.619 4.619 21 C 0.070 3.930 22 H 0.268 0.732 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.037 0.963 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.132 0.868 35 H 0.142 0.858 36 H 0.125 0.875 37 H 0.051 0.949 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.789 -22.330 1.414 24.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.666 4.666 8 H 0.089 0.911 9 S 0.098 5.902 10 C -0.263 4.263 11 C -0.137 4.137 12 C -0.064 4.064 13 N -0.259 5.259 14 C -0.099 4.099 15 C -0.159 4.159 16 C -0.708 4.708 17 S 2.595 3.405 18 O -0.904 6.904 19 O -0.949 6.949 20 C -0.747 4.747 21 C -0.058 4.058 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.140 0.860 34 H 0.150 0.850 35 H 0.160 0.840 36 H 0.144 0.856 37 H 0.070 0.930 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.275 -22.589 0.815 23.459 hybrid contribution 3.348 1.364 1.058 3.767 sum 9.623 -21.225 1.873 23.380 Atomic orbital electron populations 1.70008 1.05911 1.27426 1.47124 1.25010 0.95064 0.99045 0.94649 0.86235 0.79242 0.81312 0.78793 1.19947 1.20825 1.20003 1.22656 0.94462 0.90916 1.58603 0.91076 1.84695 1.09389 0.99236 1.96833 1.23236 1.02913 0.97482 1.02635 1.21325 0.96930 0.91748 1.03703 1.22344 0.97237 0.85705 1.01103 1.62070 1.26828 1.03796 1.33193 1.22315 0.94611 0.94669 0.98288 1.20060 1.02506 0.93357 0.99986 1.28897 1.20691 1.07287 1.13894 1.08365 0.78397 0.75804 0.77933 1.93636 1.68197 1.62696 1.65880 1.93585 1.71294 1.47882 1.82185 1.30425 1.13421 1.08751 1.22131 1.21644 1.01871 0.90879 0.91425 0.92245 0.92462 0.92092 0.90134 0.91620 0.94452 0.90056 0.92646 0.89721 0.90304 0.88283 0.86023 0.84970 0.83968 0.85631 0.93046 0.88677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.14 13.22 55.49 0.73 -25.40 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -14.89 9.50 30.94 0.29 -14.59 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.13 -3.41 21.44 -107.50 -2.30 -5.72 16 10 C -0.11 -2.24 5.67 37.16 0.21 -2.03 16 11 C -0.10 -1.57 5.14 -26.73 -0.14 -1.71 16 12 C 0.06 0.77 4.73 -3.82 -0.02 0.75 16 13 N -0.53 -5.62 3.87 -235.48 -0.91 -6.53 16 14 C 0.03 0.22 5.41 -4.51 -0.02 0.20 16 15 C -0.12 -0.83 5.06 -30.10 -0.15 -0.99 16 16 C -0.58 -3.37 5.98 33.70 0.20 -3.17 16 17 S 2.42 21.96 5.20 -107.50 -0.56 21.40 16 18 O -0.91 -12.20 16.75 -57.82 -0.97 -13.17 16 19 O -0.95 -11.60 18.10 -57.82 -1.05 -12.64 16 20 C -0.62 -4.34 5.56 37.46 0.21 -4.13 16 21 C 0.07 0.68 4.31 -3.61 -0.02 0.67 16 22 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 23 H 0.06 1.11 8.14 -51.91 -0.42 0.68 16 24 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 25 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 26 H 0.07 1.05 6.83 -51.93 -0.35 0.70 16 27 H 0.04 0.42 7.91 -51.93 -0.41 0.01 16 28 H 0.08 0.92 7.85 -51.93 -0.41 0.51 16 29 H 0.06 0.30 6.15 -51.93 -0.32 -0.02 16 30 H 0.08 0.57 7.43 -51.93 -0.39 0.18 16 31 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.10 0.89 7.43 -51.93 -0.39 0.51 16 33 H 0.12 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.14 0.83 8.14 -51.74 -0.42 0.41 16 36 H 0.13 0.50 7.04 -51.74 -0.36 0.14 16 37 H 0.05 0.46 7.79 -51.93 -0.40 0.05 16 38 H 0.09 1.06 7.04 -51.93 -0.37 0.70 16 LS Contribution 324.88 15.07 4.90 4.90 Total: -1.00 -36.49 324.88 -10.61 -47.11 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -5.90 Total: -3.39 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 0.47 Total: -23.07 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: -0.18 Total: -31.93 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -2.02 Total: -25.82 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 18.54 SS G_CDS: -2.86 Total: 15.68 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.49 -10.61 -47.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332058050.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.009 kcal (2) G-P(sol) polarization free energy of solvation -36.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds