Wall clock time and date at job start Tue Mar 31 2020 03:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00074 * 2 1 4 4 H 1.48504 * 109.46846 * 239.99536 * 3 2 1 5 5 H 1.48496 * 109.47150 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47397 * 119.99674 * 3 2 1 7 7 C 1.38807 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00026 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00065 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47086 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46750 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.46797 * 180.02562 * 12 11 10 14 14 C 1.45466 * 110.99925 * 169.99798 * 13 12 11 15 15 C 1.53173 * 107.19182 * 226.81385 * 14 13 12 16 16 C 1.45669 * 115.13526 * 268.77421 * 15 14 13 17 17 S 1.83550 * 109.73764 * 64.60618 * 16 15 14 18 18 O 1.42100 * 108.60040 * 45.92098 * 17 16 15 19 19 O 1.42095 * 108.59997 * 177.02963 * 17 16 15 20 20 C 1.80121 * 101.75727 * 291.47639 * 17 16 15 21 21 C 1.46727 * 110.99872 * 293.55708 * 13 12 11 22 22 H 0.97000 * 120.00653 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.46606 * 60.00256 * 10 9 7 24 24 H 1.08998 * 109.46976 * 300.00531 * 10 9 7 25 25 H 1.08998 * 109.46855 * 60.00702 * 11 10 9 26 26 H 1.08994 * 109.47109 * 300.00144 * 11 10 9 27 27 H 1.08995 * 109.47310 * 59.99807 * 12 11 10 28 28 H 1.09000 * 109.46767 * 299.99968 * 12 11 10 29 29 H 1.08997 * 109.91229 * 107.39486 * 14 13 12 30 30 H 1.09000 * 109.91285 * 346.23809 * 14 13 12 31 31 H 1.09008 * 108.34815 * 147.31076 * 15 14 13 32 32 H 1.08997 * 108.34988 * 30.24537 * 15 14 13 33 33 H 1.08997 * 109.42700 * 304.52500 * 16 15 14 34 34 H 1.09004 * 109.43123 * 184.68528 * 16 15 14 35 35 H 1.09007 * 108.80280 * 206.21414 * 20 17 16 36 36 H 1.08998 * 108.80931 * 324.47301 * 20 17 16 37 37 H 1.08994 * 108.11200 * 315.77893 * 21 13 12 38 38 H 1.09001 * 108.10788 * 72.43109 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9792 -5.3243 0.0012 12 6 3.1513 -6.3078 0.0018 13 7 2.6362 -7.6834 0.0018 14 6 3.7059 -8.6407 -0.2334 15 6 3.2069 -9.6254 -1.2953 16 6 2.5438 -10.8133 -0.7746 17 16 0.9992 -10.3313 0.0921 18 8 0.2958 -9.4006 -0.7192 19 8 0.3379 -11.5106 0.5292 20 6 1.6426 -9.4651 1.5343 21 6 1.9385 -7.9837 1.2573 22 1 -0.4851 0.8400 -0.0004 23 1 3.1244 -3.7314 0.8906 24 1 3.1244 -3.7313 -0.8894 25 1 1.3705 -5.4846 -0.8886 26 1 1.3709 -5.4840 0.8913 27 1 3.7598 -6.1472 0.8917 28 1 3.7600 -6.1481 -0.8882 29 1 3.9360 -9.1743 0.6887 30 1 4.5943 -8.1231 -0.5954 31 1 4.0592 -9.9436 -1.8958 32 1 2.5092 -9.1013 -1.9484 33 1 3.2078 -11.3223 -0.0760 34 1 2.3026 -11.4846 -1.5988 35 1 0.9114 -9.5328 2.3399 36 1 2.5626 -9.9532 1.8559 37 1 2.5409 -7.5988 2.0800 38 1 0.9902 -7.4464 1.2547 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332058050.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:27 Heat of formation + Delta-G solvation = -98.046190 kcal Electronic energy + Delta-G solvation = -19524.820060 eV Core-core repulsion = 16426.631652 eV Total energy + Delta-G solvation = -3098.188408 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.091 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.86957 -37.83038 -36.90311 -35.73667 -34.59935 -33.96413 -31.84444 -28.15565 -27.60149 -25.92391 -24.21546 -22.25692 -21.41494 -19.58272 -19.49432 -17.88062 -17.75479 -16.90276 -16.88696 -16.72402 -16.31512 -15.97275 -15.66324 -15.28126 -14.93830 -14.60359 -14.33085 -13.91296 -13.64848 -13.40867 -13.18482 -13.08723 -12.95902 -12.88311 -12.82384 -12.57189 -12.52119 -12.31520 -12.13142 -11.91762 -11.61256 -11.51765 -11.29365 -11.12011 -10.92641 -10.28664 -9.25912 -8.65940 -8.35825 -6.12687 -0.83106 1.31761 1.41532 1.48606 1.76554 1.87926 2.30052 2.78971 2.87089 2.98131 3.04890 3.34234 3.70210 3.80917 3.83100 3.95145 4.06547 4.18403 4.33694 4.42401 4.43584 4.48480 4.57184 4.63187 4.73272 4.77098 4.84062 4.95529 5.01761 5.06278 5.23529 5.36864 5.40058 5.42086 5.99508 6.18845 6.21113 7.05766 8.73440 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.038398 B = 0.002922 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.030182 B = 9578.572445 C = 9928.830122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.013 3.987 3 Si 0.995 3.005 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.538 4.538 8 H 0.075 0.925 9 S -0.208 6.208 10 C -0.085 4.085 11 C -0.090 4.090 12 C 0.076 3.924 13 N -0.553 5.553 14 C 0.024 3.976 15 C -0.123 4.123 16 C -0.553 4.553 17 S 2.399 3.601 18 O -0.968 6.968 19 O -0.994 6.994 20 C -0.606 4.606 21 C 0.064 3.936 22 H 0.271 0.729 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.164 0.836 34 H 0.147 0.853 35 H 0.152 0.848 36 H 0.169 0.831 37 H 0.065 0.935 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.336 -23.452 2.017 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.192 4.192 3 Si 0.817 3.183 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.685 4.685 8 H 0.093 0.907 9 S 0.021 5.979 10 C -0.235 4.235 11 C -0.129 4.129 12 C -0.053 4.053 13 N -0.278 5.278 14 C -0.104 4.104 15 C -0.162 4.162 16 C -0.685 4.685 17 S 2.586 3.414 18 O -0.965 6.965 19 O -0.991 6.991 20 C -0.736 4.736 21 C -0.064 4.064 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.089 0.911 33 H 0.182 0.818 34 H 0.165 0.835 35 H 0.170 0.830 36 H 0.186 0.814 37 H 0.083 0.917 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.780 -23.736 1.416 25.711 hybrid contribution 2.309 1.615 0.857 2.945 sum 12.088 -22.122 2.273 25.311 Atomic orbital electron populations 1.70161 1.07806 1.28589 1.48003 1.26108 0.96022 1.03239 0.93786 0.85047 0.77894 0.75940 0.79415 1.18843 1.20133 1.18764 1.23020 0.94761 0.91902 1.58848 0.90700 1.84791 1.14604 1.01471 1.97047 1.23153 0.99898 0.97311 1.03092 1.21225 0.98478 0.90694 1.02477 1.22139 0.95097 0.85752 1.02335 1.61933 1.28503 1.03522 1.33831 1.22509 0.93844 0.94241 0.99806 1.20100 1.02829 0.93353 0.99934 1.28696 1.17721 1.07428 1.14660 1.08455 0.79912 0.74730 0.78327 1.93568 1.71293 1.64011 1.67641 1.93528 1.73776 1.48907 1.82907 1.30257 1.15616 1.06858 1.20845 1.21660 1.00751 0.92347 0.91660 0.92012 0.91627 0.91647 0.92191 0.92196 0.92889 0.89082 0.89603 0.88552 0.87570 0.91052 0.81830 0.83544 0.83017 0.81363 0.91679 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.86 13.22 21.65 0.29 -55.57 16 2 C 0.01 0.76 5.49 84.86 0.47 1.22 16 3 Si 1.00 44.07 29.55 68.60 2.03 46.10 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.54 -31.31 9.50 67.96 0.65 -30.66 16 8 H 0.07 4.14 7.80 -2.91 -0.02 4.12 16 9 S -0.21 -11.31 21.44 -56.49 -1.21 -12.52 16 10 C -0.09 -3.37 5.67 71.98 0.41 -2.96 16 11 C -0.09 -2.89 5.14 30.60 0.16 -2.74 16 12 C 0.08 1.67 4.73 86.30 0.41 2.08 16 13 N -0.55 -10.61 3.87 -898.93 -3.48 -14.09 16 14 C 0.02 0.26 5.41 86.63 0.47 0.72 16 15 C -0.12 -1.29 5.06 28.41 0.14 -1.15 16 16 C -0.55 -4.46 5.98 69.74 0.42 -4.04 16 17 S 2.40 42.08 5.20 -56.49 -0.29 41.79 16 18 O -0.97 -27.62 16.75 -127.38 -2.13 -29.76 16 19 O -0.99 -24.20 18.10 -127.38 -2.31 -26.51 16 20 C -0.61 -7.07 5.56 72.18 0.40 -6.67 16 21 C 0.06 1.15 4.31 86.54 0.37 1.52 16 22 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 23 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 24 H 0.06 2.52 8.14 -2.40 -0.02 2.50 16 25 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.06 1.98 6.83 -2.39 -0.02 1.97 16 27 H 0.05 1.02 7.91 -2.39 -0.02 1.00 16 28 H 0.09 1.84 7.85 -2.39 -0.02 1.82 16 29 H 0.09 0.43 6.15 -2.39 -0.01 0.41 16 30 H 0.10 0.86 7.43 -2.39 -0.02 0.84 16 31 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.07 1.21 7.43 -2.39 -0.02 1.19 16 33 H 0.16 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.15 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.15 1.52 8.14 -2.50 -0.02 1.50 16 36 H 0.17 0.48 7.04 -2.51 -0.02 0.47 16 37 H 0.07 0.98 7.79 -2.39 -0.02 0.97 16 38 H 0.07 1.52 7.04 -2.39 -0.02 1.51 16 Total: -1.00 -83.82 324.88 -2.19 -86.01 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 1.03 Total: 7.21 kcal Atomic # 6 Polarization: -46.55 SS G_CDS: 3.89 Total: -42.67 kcal Atomic # 7 Polarization: -66.46 SS G_CDS: -3.20 Total: -69.66 kcal Atomic # 8 Polarization: -51.83 SS G_CDS: -4.44 Total: -56.27 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 30.78 SS G_CDS: -1.50 Total: 29.27 kcal Total: -83.82 -2.19 -86.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332058050.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.038 kcal (2) G-P(sol) polarization free energy of solvation -83.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds