Wall clock time and date at job start Tue Mar 31 2020 03:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.44348 * 123.51002 * 28.81158 * 3 2 1 5 5 C 1.32512 * 114.30348 * 180.02562 * 4 3 2 6 6 S 1.75539 * 111.01092 * 359.97438 * 5 4 3 7 7 C 1.37293 * 123.50561 * 208.83117 * 3 2 1 8 8 N 1.38498 * 125.13201 * 359.95940 * 7 3 2 9 9 C 1.34778 * 119.99952 * 180.02562 * 8 7 3 10 10 O 1.21393 * 119.99804 * 0.02562 * 9 8 7 11 11 C 1.49276 * 119.99866 * 179.97438 * 9 8 7 12 12 O 1.21374 * 119.99794 * 0.02562 * 11 9 8 13 13 N 1.34778 * 119.99866 * 180.02562 * 11 9 8 14 14 C 1.46494 * 119.99711 * 180.02562 * 13 11 9 15 15 C 1.53004 * 109.46820 * 180.02562 * 14 13 11 16 16 C 1.50696 * 109.47110 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00130 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00154 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00208 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99986 * 0.02562 * 18 16 15 21 21 H 1.48490 * 109.47107 * 89.99543 * 20 18 16 22 22 H 1.48502 * 109.47144 * 210.00253 * 20 18 16 23 23 H 1.48500 * 109.46733 * 329.99738 * 20 18 16 24 24 H 1.08005 * 122.85321 * 0.02562 * 4 3 2 25 25 H 1.08008 * 124.49540 * 180.26988 * 5 4 3 26 26 H 0.97005 * 119.99797 * 0.02562 * 8 7 3 27 27 H 0.97004 * 119.99662 * 0.02562 * 13 11 9 28 28 H 1.09005 * 109.46965 * 299.99414 * 14 13 11 29 29 H 1.08997 * 109.47653 * 59.99967 * 14 13 11 30 30 H 1.09005 * 109.46708 * 299.99370 * 15 14 13 31 31 H 1.08997 * 109.47650 * 59.99774 * 15 14 13 32 32 H 0.96996 * 120.00348 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3654 -1.0536 -0.5800 5 6 4.6733 -0.8675 -0.4774 6 16 5.0318 0.6383 0.3505 7 6 3.3254 1.0039 0.5521 8 7 2.8204 2.1340 1.1733 9 6 3.6616 3.0568 1.6806 10 8 4.8618 2.8977 1.5925 11 6 3.1172 4.2751 2.3498 12 8 1.9172 4.4344 2.4374 13 7 3.9584 5.1982 2.8566 14 6 3.4242 6.3936 3.5137 15 6 4.5814 7.2713 3.9947 16 6 4.0320 8.5013 4.6702 17 1 2.9641 8.6426 4.7490 18 6 4.8924 9.4457 5.1886 19 7 4.4129 10.5193 5.7776 20 14 6.7394 9.2009 5.0530 21 1 7.2280 9.8101 3.7901 22 1 7.4108 9.8496 6.2079 23 1 7.0474 7.7482 5.0535 24 1 2.9327 -1.9205 -1.0572 25 1 5.4199 -1.5493 -0.8573 26 1 1.8613 2.2613 1.2434 27 1 4.9175 5.0710 2.7862 28 1 2.8129 6.9544 2.8066 29 1 2.8136 6.0972 4.3666 30 1 5.1931 6.7107 4.7017 31 1 5.1916 7.5677 3.1416 32 1 5.0182 11.1836 6.1427 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340176410.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:27 Heat of formation + Delta-G solvation = -7.469010 kcal Electronic energy + Delta-G solvation = -19356.293118 eV Core-core repulsion = 16023.048137 eV Total energy + Delta-G solvation = -3333.244981 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.28183 -39.14763 -38.35430 -36.27510 -35.76280 -34.91722 -32.92987 -30.48708 -29.71261 -26.62933 -25.10765 -23.56802 -21.81737 -21.05264 -20.76048 -19.56046 -18.56332 -17.22686 -16.98175 -16.49595 -16.48649 -15.48841 -15.16175 -15.03990 -14.73036 -14.29632 -14.25559 -14.01044 -13.56990 -13.40749 -13.05923 -12.81840 -12.69498 -12.36528 -12.21611 -11.63007 -11.50659 -11.35405 -11.11608 -10.55136 -10.43736 -10.04956 -9.80071 -9.43668 -9.00913 -8.84301 -8.68833 -8.62116 -6.18710 -4.20357 0.09287 0.70904 1.18137 1.47365 1.62975 1.92259 2.37342 2.89545 3.16911 3.21122 3.29521 3.29868 3.32563 3.71437 4.26455 4.31319 4.50124 4.71770 5.14040 5.21399 5.36220 5.66465 5.70813 5.79993 5.96496 6.20403 6.27172 6.35148 6.85260 7.01471 7.07262 7.20488 7.39614 7.54345 7.88396 8.33890 8.84113 9.40549 10.93954 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.029556 B = 0.002977 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.125880 B = 9403.798693 C =10330.477823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C 0.271 3.729 3 C -0.113 4.113 4 C -0.074 4.074 5 C -0.267 4.267 6 S 0.273 5.727 7 C 0.089 3.911 8 N -0.608 5.608 9 C 0.504 3.496 10 O -0.478 6.478 11 C 0.506 3.494 12 O -0.517 6.517 13 N -0.682 5.682 14 C 0.126 3.874 15 C -0.023 4.023 16 C -0.527 4.527 17 H 0.077 0.923 18 C 0.071 3.929 19 N -0.896 5.896 20 Si 0.881 3.119 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.265 1.265 24 H 0.151 0.849 25 H 0.174 0.826 26 H 0.433 0.567 27 H 0.411 0.589 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.026 0.974 31 H 0.021 0.979 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.703 -23.252 -12.751 26.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.093 5.093 2 C -0.046 4.046 3 C -0.133 4.133 4 C -0.104 4.104 5 C -0.402 4.402 6 S 0.534 5.466 7 C -0.132 4.132 8 N -0.253 5.253 9 C 0.286 3.714 10 O -0.351 6.351 11 C 0.284 3.716 12 O -0.394 6.394 13 N -0.333 5.333 14 C 0.005 3.995 15 C -0.061 4.061 16 C -0.565 4.565 17 H 0.095 0.905 18 C -0.131 4.131 19 N -0.534 5.534 20 Si 0.708 3.292 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.190 1.190 24 H 0.168 0.832 25 H 0.191 0.809 26 H 0.273 0.727 27 H 0.247 0.753 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.039 0.961 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.342 -22.225 -12.185 25.566 hybrid contribution 0.007 -0.758 -0.437 0.875 sum 3.350 -22.983 -12.622 26.434 Atomic orbital electron populations 1.81317 1.11547 1.07160 1.09242 1.24897 0.91650 0.94306 0.93703 1.15978 0.85493 0.98390 1.13452 1.20504 0.91849 0.97972 1.00117 1.25798 0.99948 1.04741 1.09721 1.85435 0.95287 1.12994 1.52919 1.22771 1.00495 0.90409 0.99511 1.42553 1.12526 1.17252 1.52955 1.21027 0.86434 0.84741 0.79150 1.90714 1.14351 1.75661 1.54342 1.19303 0.87172 0.83728 0.81373 1.90826 1.14225 1.76965 1.57343 1.46221 1.10756 1.21305 1.55038 1.21829 0.98682 0.82520 0.96504 1.19830 0.93882 0.95619 0.96751 1.20848 0.95613 1.02666 1.37389 0.90503 1.24989 0.99000 0.94775 0.94378 1.69892 1.35431 1.10068 1.37964 0.86762 0.85540 0.78898 0.77979 1.20115 1.21183 1.18951 0.83185 0.80855 0.72679 0.75310 0.90889 0.90863 0.95623 0.96055 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.31 18.54 41.84 0.78 -4.53 16 2 C 0.27 2.85 15.02 -22.47 -0.34 2.51 16 3 C -0.11 -0.97 5.88 -105.91 -0.62 -1.59 16 4 C -0.07 -0.47 10.26 -39.09 -0.40 -0.87 16 5 C -0.27 -1.47 11.08 28.82 0.32 -1.15 16 6 S 0.27 2.14 20.31 -107.50 -2.18 -0.04 16 7 C 0.09 0.83 7.17 -14.88 -0.11 0.73 16 8 N -0.61 -6.32 5.35 -10.82 -0.06 -6.38 16 9 C 0.50 6.03 7.84 -11.67 -0.09 5.94 16 10 O -0.48 -5.87 13.95 5.46 0.08 -5.80 16 11 C 0.51 7.27 7.88 -11.67 -0.09 7.18 16 12 O -0.52 -8.68 16.47 5.48 0.09 -8.59 16 13 N -0.68 -10.21 5.55 -60.79 -0.34 -10.54 16 14 C 0.13 2.30 5.61 -4.04 -0.02 2.28 16 15 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 16 C -0.53 -14.07 9.66 -34.44 -0.33 -14.40 16 17 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -26.52 13.96 55.43 0.77 -25.75 16 20 Si 0.88 20.35 27.47 -169.99 -4.67 15.68 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 24 H 0.15 0.63 8.06 -52.48 -0.42 0.21 16 25 H 0.17 0.50 8.06 -52.48 -0.42 0.08 16 26 H 0.43 4.38 7.66 -40.82 -0.31 4.07 16 27 H 0.41 5.46 7.94 -40.82 -0.32 5.14 16 28 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.03 0.54 7.20 -51.93 -0.37 0.16 16 31 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 311.45 15.07 4.69 4.69 Total: -1.00 -30.97 311.45 -5.42 -36.39 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -2.68 Total: 2.98 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -1.90 Total: 1.88 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 1.15 Total: -47.20 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.17 Total: -14.38 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.67 Total: 15.68 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -2.18 Total: -0.04 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.97 -5.42 -36.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340176410.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.922 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds