Wall clock time and date at job start Tue Mar 31 2020 03:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.44348 * 123.51002 * 28.81158 * 3 2 1 5 5 C 1.32512 * 114.30348 * 180.02562 * 4 3 2 6 6 S 1.75539 * 111.01092 * 359.97438 * 5 4 3 7 7 C 1.37293 * 123.50561 * 208.83117 * 3 2 1 8 8 N 1.38498 * 125.13201 * 359.95940 * 7 3 2 9 9 C 1.34778 * 119.99952 * 180.02562 * 8 7 3 10 10 O 1.21393 * 119.99804 * 0.02562 * 9 8 7 11 11 C 1.49276 * 119.99866 * 179.97438 * 9 8 7 12 12 O 1.21374 * 119.99794 * 0.02562 * 11 9 8 13 13 N 1.34778 * 119.99866 * 180.02562 * 11 9 8 14 14 C 1.46494 * 119.99711 * 180.02562 * 13 11 9 15 15 C 1.53004 * 109.46820 * 180.02562 * 14 13 11 16 16 C 1.50696 * 109.47110 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00130 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00154 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00208 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99986 * 0.02562 * 18 16 15 21 21 H 1.48490 * 109.47107 * 89.99543 * 20 18 16 22 22 H 1.48502 * 109.47144 * 210.00253 * 20 18 16 23 23 H 1.48500 * 109.46733 * 329.99738 * 20 18 16 24 24 H 1.08005 * 122.85321 * 0.02562 * 4 3 2 25 25 H 1.08008 * 124.49540 * 180.26988 * 5 4 3 26 26 H 0.97005 * 119.99797 * 0.02562 * 8 7 3 27 27 H 0.97004 * 119.99662 * 0.02562 * 13 11 9 28 28 H 1.09005 * 109.46965 * 299.99414 * 14 13 11 29 29 H 1.08997 * 109.47653 * 59.99967 * 14 13 11 30 30 H 1.09005 * 109.46708 * 299.99370 * 15 14 13 31 31 H 1.08997 * 109.47650 * 59.99774 * 15 14 13 32 32 H 0.96996 * 120.00348 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3654 -1.0536 -0.5800 5 6 4.6733 -0.8675 -0.4774 6 16 5.0318 0.6383 0.3505 7 6 3.3254 1.0039 0.5521 8 7 2.8204 2.1340 1.1733 9 6 3.6616 3.0568 1.6806 10 8 4.8618 2.8977 1.5925 11 6 3.1172 4.2751 2.3498 12 8 1.9172 4.4344 2.4374 13 7 3.9584 5.1982 2.8566 14 6 3.4242 6.3936 3.5137 15 6 4.5814 7.2713 3.9947 16 6 4.0320 8.5013 4.6702 17 1 2.9641 8.6426 4.7490 18 6 4.8924 9.4457 5.1886 19 7 4.4129 10.5193 5.7776 20 14 6.7394 9.2009 5.0530 21 1 7.2280 9.8101 3.7901 22 1 7.4108 9.8496 6.2079 23 1 7.0474 7.7482 5.0535 24 1 2.9327 -1.9205 -1.0572 25 1 5.4199 -1.5493 -0.8573 26 1 1.8613 2.2613 1.2434 27 1 4.9175 5.0710 2.7862 28 1 2.8129 6.9544 2.8066 29 1 2.8136 6.0972 4.3666 30 1 5.1931 6.7107 4.7017 31 1 5.1916 7.5677 3.1416 32 1 5.0182 11.1836 6.1427 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340176410.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:27 Heat of formation + Delta-G solvation = -30.213249 kcal Electronic energy + Delta-G solvation = -19357.279383 eV Core-core repulsion = 16023.048137 eV Total energy + Delta-G solvation = -3334.231245 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.26740 -40.22189 -39.15301 -37.23581 -36.91178 -35.90823 -34.80999 -32.19527 -30.42216 -27.90864 -26.30277 -24.65371 -22.80464 -22.44835 -21.68575 -20.47001 -19.50906 -19.02088 -18.10686 -17.51857 -17.34958 -16.55647 -16.22996 -16.20161 -16.05713 -15.36934 -15.27341 -15.16962 -14.74965 -14.60464 -14.34382 -13.80723 -13.63650 -13.40061 -13.26050 -13.07876 -12.97169 -12.29089 -12.21260 -12.18235 -11.77479 -11.75855 -11.49977 -10.91319 -10.78622 -10.34641 -9.44681 -9.28313 -8.29528 -6.36922 -0.68248 0.07927 0.25818 0.74776 1.06532 1.12565 1.41393 1.43121 1.54030 1.57158 1.82540 2.29544 2.37481 2.39119 2.96053 3.06078 3.14789 3.85680 4.19327 4.23654 4.37697 4.57617 4.71830 4.84709 4.88996 5.14337 5.21056 5.26494 5.37452 5.41881 5.59008 5.96302 6.19752 6.30060 6.39096 6.68260 6.75291 7.27976 8.86836 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.029556 B = 0.002977 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.125880 B = 9403.798693 C =10330.477823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.290 3.710 3 C -0.109 4.109 4 C -0.080 4.080 5 C -0.240 4.240 6 S 0.268 5.732 7 C 0.065 3.935 8 N -0.603 5.603 9 C 0.516 3.484 10 O -0.480 6.480 11 C 0.510 3.490 12 O -0.544 6.544 13 N -0.677 5.677 14 C 0.141 3.859 15 C -0.017 4.017 16 C -0.537 4.537 17 H 0.034 0.966 18 C 0.006 3.994 19 N -0.950 5.950 20 Si 0.954 3.046 21 H -0.266 1.266 22 H -0.289 1.289 23 H -0.236 1.236 24 H 0.175 0.825 25 H 0.208 0.792 26 H 0.432 0.568 27 H 0.422 0.578 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.384 -26.047 -14.277 30.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.026 4.026 3 C -0.130 4.130 4 C -0.109 4.109 5 C -0.375 4.375 6 S 0.529 5.471 7 C -0.155 4.155 8 N -0.248 5.248 9 C 0.297 3.703 10 O -0.353 6.353 11 C 0.289 3.711 12 O -0.422 6.422 13 N -0.329 5.329 14 C 0.018 3.982 15 C -0.055 4.055 16 C -0.576 4.576 17 H 0.052 0.948 18 C -0.192 4.192 19 N -0.590 5.590 20 Si 0.777 3.223 21 H -0.191 1.191 22 H -0.215 1.215 23 H -0.159 1.159 24 H 0.192 0.808 25 H 0.225 0.775 26 H 0.272 0.728 27 H 0.260 0.740 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.036 -25.077 -13.742 29.226 hybrid contribution -0.901 0.030 -0.010 0.902 sum 5.135 -25.047 -13.752 29.032 Atomic orbital electron populations 1.81333 1.12919 1.08699 1.10832 1.25176 0.91951 0.92981 0.92460 1.16239 0.84510 0.98994 1.13276 1.20742 0.91855 0.98056 1.00270 1.26119 1.00286 1.03450 1.07670 1.85477 0.94227 1.14457 1.52980 1.22956 1.01500 0.90297 1.00730 1.42387 1.12251 1.17414 1.52732 1.20253 0.86375 0.84189 0.79481 1.90727 1.14145 1.75731 1.54731 1.19649 0.86619 0.84180 0.80628 1.90817 1.15505 1.77693 1.58194 1.45913 1.11421 1.20511 1.55048 1.21351 0.97382 0.83373 0.96101 1.19698 0.94833 0.93900 0.97043 1.21212 0.93979 1.04892 1.37492 0.94751 1.26033 1.04956 0.94250 0.93920 1.70064 1.37564 1.11524 1.39812 0.85605 0.78209 0.80466 0.78039 1.19072 1.21465 1.15891 0.80758 0.77523 0.72789 0.73977 0.92005 0.91998 0.94275 0.94420 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.65 18.54 19.00 0.35 -11.30 16 2 C 0.29 5.82 15.02 88.33 1.33 7.15 16 3 C -0.11 -1.65 5.88 -20.70 -0.12 -1.78 16 4 C -0.08 -0.72 10.26 22.69 0.23 -0.49 16 5 C -0.24 -1.66 11.08 66.68 0.74 -0.92 16 6 S 0.27 3.46 20.31 -56.49 -1.15 2.31 16 7 C 0.07 1.10 7.17 83.42 0.60 1.70 16 8 N -0.60 -11.95 5.35 -306.49 -1.64 -13.59 16 9 C 0.52 11.67 7.84 87.22 0.68 12.36 16 10 O -0.48 -10.85 13.95 -3.38 -0.05 -10.89 16 11 C 0.51 14.29 7.88 87.22 0.69 14.98 16 12 O -0.54 -18.33 16.47 -3.32 -0.05 -18.39 16 13 N -0.68 -19.44 5.55 -464.58 -2.58 -22.01 16 14 C 0.14 5.13 5.61 86.38 0.48 5.61 16 15 C -0.02 -0.70 4.16 29.85 0.12 -0.58 16 16 C -0.54 -29.27 9.66 25.60 0.25 -29.02 16 17 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 18 C 0.01 0.32 5.47 84.66 0.46 0.79 16 19 N -0.95 -57.90 13.96 21.45 0.30 -57.60 16 20 Si 0.95 41.13 27.47 68.60 1.88 43.02 16 21 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 22 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.24 -9.00 6.54 99.48 0.65 -8.35 16 24 H 0.18 0.75 8.06 -2.91 -0.02 0.73 16 25 H 0.21 0.08 8.06 -2.91 -0.02 0.05 16 26 H 0.43 8.63 7.66 -92.70 -0.71 7.92 16 27 H 0.42 10.27 7.94 -92.71 -0.74 9.54 16 28 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 29 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.04 1.54 7.20 -2.38 -0.02 1.52 16 31 H 0.04 1.46 7.57 -2.39 -0.02 1.44 16 32 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -68.90 311.45 2.24 -66.67 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -0.30 Total: 12.01 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 5.47 Total: 9.78 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -3.57 Total: -104.50 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.10 Total: -29.28 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 1.88 Total: 43.02 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -1.15 Total: 2.31 kcal Total: -68.90 2.24 -66.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340176410.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.453 kcal (2) G-P(sol) polarization free energy of solvation -68.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds