Wall clock time and date at job start Tue Mar 31 2020 03:03:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08994 * 109.47385 * 2 1
4 4 C 1.50702 * 109.46686 * 120.00192 * 2 1 3
5 5 H 1.08007 * 119.99981 * 114.47702 * 4 2 1
6 6 C 1.37872 * 120.00181 * 294.48189 * 4 2 1
7 7 N 1.31519 * 120.00026 * 164.58642 * 6 4 2
8 8 Si 1.86797 * 119.99894 * 344.86064 * 6 4 2
9 9 H 1.48501 * 109.47054 * 269.72685 * 8 6 4
10 10 H 1.48506 * 109.47355 * 29.72399 * 8 6 4
11 11 H 1.48500 * 109.47516 * 149.72369 * 8 6 4
12 12 N 1.46503 * 109.46991 * 239.99842 * 2 1 3
13 13 C 1.34774 * 120.00000 * 85.00701 * 12 2 1
14 14 O 1.21375 * 119.99959 * 359.97438 * 13 12 2
15 15 C 1.49270 * 120.00205 * 179.97438 * 13 12 2
16 16 O 1.21397 * 119.99712 * 0.02562 * 15 13 12
17 17 N 1.34774 * 120.00205 * 179.97438 * 15 13 12
18 18 C 1.38499 * 120.00264 * 180.02562 * 17 15 13
19 19 S 1.75673 * 125.13064 * 0.02562 * 18 17 15
20 20 C 1.75531 * 91.96469 * 180.02562 * 19 18 17
21 21 C 1.32507 * 111.01568 * 359.97438 * 20 19 18
22 22 C 1.37291 * 125.13395 * 179.72165 * 18 17 15
23 23 C 1.43204 * 123.50525 * 359.97438 * 22 18 17
24 24 N 8.05962 * 99.65846 * 287.14959 * 2 1 3
25 25 H 1.08992 * 109.47288 * 173.53991 * 1 2 3
26 26 H 1.08997 * 109.47143 * 293.55201 * 1 2 3
27 27 H 1.09005 * 109.46269 * 53.54439 * 1 2 3
28 28 H 0.96994 * 120.00042 * 355.18782 * 7 6 4
29 29 H 0.97002 * 119.99993 * 265.00302 * 12 2 1
30 30 H 0.97002 * 120.00007 * 359.97438 * 17 15 13
31 31 H 1.08003 * 124.48820 * 179.97438 * 20 19 18
32 32 H 1.07992 * 122.85231 * 179.97438 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7105 1.2305
5 1 2.5776 -1.6377 1.1339
6 6 1.7955 -0.1769 2.4795
7 7 1.9542 -0.9201 3.5530
8 14 1.2419 1.5993 2.6468
9 1 2.4316 2.4785 2.7762
10 1 0.4655 1.9913 1.4430
11 1 0.3884 1.7403 3.8538
12 7 2.0183 -0.6907 -1.1962
13 6 2.1472 -0.0183 -2.3571
14 8 1.8582 1.1593 -2.4117
15 6 2.6452 -0.7218 -3.5758
16 8 2.9338 -1.8997 -3.5212
17 7 2.7736 -0.0496 -4.7368
18 6 3.2352 -0.7025 -5.8677
19 16 3.6901 -2.3977 -5.9414
20 6 4.1017 -2.2756 -7.6434
21 6 3.9022 -1.0454 -8.0935
22 6 3.4008 -0.1240 -7.1017
23 6 3.1104 1.2513 -7.3754
24 7 2.8822 2.3428 -7.5921
25 1 -0.3633 -1.0211 -0.1156
26 1 -0.3633 0.4106 0.9420
27 1 -0.3632 0.6107 -0.8266
28 1 2.1697 -1.8615 3.4635
29 1 2.2490 -1.6319 -1.1526
30 1 2.5419 0.8913 -4.7807
31 1 4.4690 -3.0947 -8.2440
32 1 4.0947 -0.7574 -9.1163
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000340298734.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:03:01
Heat of formation + Delta-G solvation = -26.608095 kcal
Electronic energy + Delta-G solvation = -19932.100060 eV
Core-core repulsion = 16598.025146 eV
Total energy + Delta-G solvation = -3334.074914 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 293.062 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-42.24758 -40.22591 -39.15676 -37.31098 -36.99867 -35.94172 -34.52152 -31.81830
-30.37806 -27.22616 -26.80728 -25.06505 -22.95938 -22.15849 -21.50008 -20.71859
-19.89510 -19.16954 -18.08439 -17.50922 -17.34405 -16.81010 -16.17737 -15.79011
-15.63742 -15.24093 -15.07246 -15.02042 -14.68463 -14.35152 -14.32490 -13.81336
-13.68871 -13.56000 -13.38069 -13.21822 -12.97710 -12.48787 -12.19319 -12.10991
-11.76969 -11.49606 -11.15933 -10.88766 -10.59674 -10.22360 -9.46896 -9.29153
-8.82663 -6.49010 -0.68038 0.06970 0.28565 0.78083 1.05893 1.14663
1.50992 1.51273 1.56656 1.70919 1.87380 2.38544 2.38897 2.44230
2.95743 2.99603 3.23177 3.85187 4.18463 4.41509 4.57194 4.64002
4.68382 4.83912 4.97626 5.12365 5.19586 5.23426 5.39791 5.42758
5.54209 5.96957 6.07042 6.38250 6.44158 6.45143 6.84402 7.27550
8.57231
Molecular weight = 293.06amu
Principal moments of inertia in cm(-1)
A = 0.028017 B = 0.003617 C = 0.003288
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 999.168194 B = 7738.711703 C = 8514.066734
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.241 3.759
3 H 0.040 0.960
4 C -0.618 4.618
5 H 0.041 0.959
6 C -0.002 4.002
7 N -0.926 5.926
8 Si 1.071 2.929
9 H -0.276 1.276
10 H -0.241 1.241
11 H -0.280 1.280
12 N -0.662 5.662
13 C 0.503 3.497
14 O -0.548 6.548
15 C 0.514 3.486
16 O -0.484 6.484
17 N -0.603 5.603
18 C 0.065 3.935
19 S 0.258 5.742
20 C -0.239 4.239
21 C -0.079 4.079
22 C -0.108 4.108
23 C 0.290 3.710
24 N -0.458 5.458
25 H 0.054 0.946
26 H 0.060 0.940
27 H 0.046 0.954
28 H 0.260 0.740
29 H 0.413 0.587
30 H 0.432 0.568
31 H 0.209 0.791
32 H 0.178 0.822
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.195 -4.239 -23.274 23.872
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C 0.138 3.862
3 H 0.058 0.942
4 C -0.656 4.656
5 H 0.060 0.940
6 C -0.203 4.203
7 N -0.560 5.560
8 Si 0.893 3.107
9 H -0.202 1.202
10 H -0.165 1.165
11 H -0.206 1.206
12 N -0.312 5.312
13 C 0.283 3.717
14 O -0.427 6.427
15 C 0.296 3.704
16 O -0.358 6.358
17 N -0.247 5.247
18 C -0.155 4.155
19 S 0.519 5.481
20 C -0.374 4.374
21 C -0.108 4.108
22 C -0.129 4.129
23 C -0.026 4.026
24 N -0.136 5.136
25 H 0.073 0.927
26 H 0.078 0.922
27 H 0.065 0.935
28 H 0.069 0.931
29 H 0.249 0.751
30 H 0.272 0.728
31 H 0.226 0.774
32 H 0.195 0.805
Dipole moment (debyes) X Y Z Total
from point charges 2.493 -2.606 -21.342 21.644
hybrid contribution 0.545 -0.560 -1.484 1.677
sum 3.038 -3.166 -22.826 23.244
Atomic orbital electron populations
1.22377 0.96655 1.01179 1.00920 1.19091 0.92108 0.93590 0.81449
0.94219 1.22212 1.40632 1.10548 0.92179 0.94033 1.26886 0.93594
1.08388 0.91449 1.70925 1.45312 1.08104 1.31685 0.83776 0.77986
0.71391 0.77598 1.20209 1.16516 1.20573 1.46061 1.61640 1.14982
1.08472 1.19708 0.80442 0.86939 0.84626 1.90761 1.51141 1.15903
1.84944 1.20382 0.78763 0.86847 0.84416 1.90713 1.46519 1.14952
1.83587 1.42382 1.60704 1.15350 1.06268 1.22968 1.03371 1.00855
0.88299 1.85554 1.60395 0.96963 1.05143 1.26113 1.09139 1.02190
0.99970 1.20750 0.99584 0.90560 0.99868 1.16243 1.16238 0.87702
0.92717 1.25141 0.92317 0.91906 0.93187 1.81322 1.11444 1.12579
1.08227 0.92669 0.92161 0.93508 0.93077 0.75058 0.72753 0.77429
0.80516
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -6.20 8.76 71.98 0.63 -5.57 16
2 C 0.24 10.73 2.11 44.25 0.09 10.83 16
3 H 0.04 1.87 6.21 -2.39 -0.01 1.85 16
4 C -0.62 -32.24 9.02 25.60 0.23 -32.01 16
5 H 0.04 2.32 7.96 -2.91 -0.02 2.30 16
6 C 0.00 -0.11 5.33 84.65 0.45 0.34 16
7 N -0.93 -54.47 13.70 21.45 0.29 -54.18 16
8 Si 1.07 47.42 26.17 68.60 1.80 49.21 16
9 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16
10 H -0.24 -9.62 5.53 99.48 0.55 -9.07 16
11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16
12 N -0.66 -25.21 5.06 -447.60 -2.27 -27.48 16
13 C 0.50 17.46 7.85 87.21 0.68 18.14 16
14 O -0.55 -21.20 16.14 -3.32 -0.05 -21.26 16
15 C 0.51 14.50 7.84 87.21 0.68 15.18 16
16 O -0.48 -13.86 13.95 -3.39 -0.05 -13.90 16
17 N -0.60 -14.33 5.35 -306.50 -1.64 -15.97 16
18 C 0.07 1.31 7.17 83.42 0.60 1.90 16
19 S 0.26 4.21 20.31 -56.49 -1.15 3.07 16
20 C -0.24 -2.19 11.08 66.68 0.74 -1.45 16
21 C -0.08 -0.86 10.26 22.69 0.23 -0.63 16
22 C -0.11 -1.88 5.88 -20.70 -0.12 -2.00 16
23 C 0.29 6.35 15.02 88.33 1.33 7.67 16
24 N -0.46 -12.25 18.54 19.00 0.35 -11.90 16
25 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16
26 H 0.06 2.47 5.06 -2.39 -0.01 2.45 16
27 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16
28 H 0.26 15.36 8.73 -92.71 -0.81 14.55 16
29 H 0.41 14.83 7.99 -92.71 -0.74 14.09 16
30 H 0.43 10.16 7.66 -92.71 -0.71 9.44 16
31 H 0.21 0.49 8.06 -2.91 -0.02 0.46 16
32 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16
Total: -1.00 -64.28 305.29 2.40 -61.88
By element:
Atomic # 1 Polarization: 18.56 SS G_CDS: -0.43 Total: 18.13 kcal
Atomic # 6 Polarization: 6.85 SS G_CDS: 5.55 Total: 12.40 kcal
Atomic # 7 Polarization: -106.27 SS G_CDS: -3.26 Total: -109.53 kcal
Atomic # 8 Polarization: -35.06 SS G_CDS: -0.10 Total: -35.16 kcal
Atomic # 14 Polarization: 47.42 SS G_CDS: 1.80 Total: 49.21 kcal
Atomic # 16 Polarization: 4.21 SS G_CDS: -1.15 Total: 3.07 kcal
Total: -64.28 2.40 -61.88 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000340298734.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.268 kcal
(2) G-P(sol) polarization free energy of solvation -64.278 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.011 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.876 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.608 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds