Wall clock time and date at job start Tue Mar 31 2020 03:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86805 * 119.99858 * 2 1 4 4 H 1.48501 * 109.46910 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47241 * 300.00122 * 3 2 1 6 6 H 1.48498 * 109.46842 * 60.00234 * 3 2 1 7 7 C 1.38947 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00400 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00077 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00062 * 180.02562 * 9 7 2 11 11 O 1.21298 * 120.00224 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99767 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.46923 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00328 * 179.97438 * 13 12 10 15 15 O 1.21739 * 119.99660 * 0.02562 * 14 13 12 16 16 C 1.46449 * 120.00436 * 180.02562 * 14 13 12 17 17 C 1.37472 * 125.80684 * 180.58325 * 16 14 13 18 18 C 1.40657 * 107.55602 * 180.02562 * 17 16 14 19 19 S 1.76023 * 142.39754 * 179.34221 * 18 17 16 20 20 C 1.75594 * 91.31118 * 180.02562 * 19 18 17 21 21 C 1.32778 * 110.47257 * 359.97438 * 20 19 18 22 22 C 1.38244 * 108.03129 * 359.60893 * 18 17 16 23 23 N 1.37916 * 125.80579 * 0.02562 * 16 14 13 24 24 H 0.97001 * 125.68258 * 0.07122 * 23 16 14 25 25 H 0.96992 * 119.99794 * 359.97438 * 1 2 3 26 26 H 0.96997 * 120.00001 * 0.02562 * 9 7 2 27 27 H 1.08998 * 109.47361 * 60.00015 * 12 10 9 28 28 H 1.08996 * 109.47022 * 299.99526 * 12 10 9 29 29 H 0.97002 * 120.00426 * 359.97438 * 13 12 10 30 30 H 1.08000 * 126.22004 * 359.39042 * 17 16 14 31 31 H 1.07999 * 124.76223 * 180.02562 * 20 19 18 32 32 H 1.08002 * 122.15800 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3907 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1959 -5.9764 -0.0016 14 6 1.7467 -7.2471 -0.0017 15 8 0.5498 -7.4696 -0.0018 16 6 2.6984 -8.3603 -0.0016 17 6 2.3737 -9.6960 -0.0130 18 6 3.5765 -10.4251 -0.0078 19 16 4.2124 -12.0665 -0.0009 20 6 5.8638 -11.4698 0.0017 21 6 5.8779 -10.1421 -0.0030 22 6 4.6238 -9.5228 -0.0023 23 7 4.0729 -8.2467 -0.0010 24 1 4.5719 -7.4149 0.0005 25 1 -0.4849 0.8400 0.0004 26 1 0.3535 -2.3907 -0.0005 27 1 0.6175 -4.9205 -0.8913 28 1 0.6169 -4.9209 0.8886 29 1 3.1496 -5.7992 -0.0019 30 1 1.3763 -10.1103 -0.0143 31 1 6.7445 -12.0950 0.0057 32 1 6.7983 -9.5770 -0.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344189146.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:17 Heat of formation + Delta-G solvation = -4.792582 kcal Electronic energy + Delta-G solvation = -19542.884167 eV Core-core repulsion = 16209.755244 eV Total energy + Delta-G solvation = -3333.128923 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.47291 -39.37114 -38.13780 -35.46192 -34.62843 -33.83017 -31.48025 -31.08000 -29.14143 -27.29650 -24.74094 -23.51293 -22.33690 -20.59081 -20.07710 -19.54521 -18.79317 -18.12301 -16.79478 -15.86819 -15.62870 -15.60493 -15.45559 -14.75924 -14.68245 -14.36049 -14.11957 -13.76474 -13.71821 -13.55864 -12.95596 -12.32595 -12.13122 -12.05853 -11.72133 -11.70511 -11.20083 -11.05207 -10.46913 -10.40319 -10.17732 -9.91677 -9.72653 -9.05451 -8.74727 -8.25871 -8.18391 -7.85651 -6.58847 -4.01270 0.58408 1.34317 1.80945 1.87248 2.56380 2.67948 3.04765 3.14453 3.19213 3.25845 3.30644 3.64570 4.04647 4.55783 4.74777 4.76361 4.80002 5.09646 5.15392 5.30850 5.54747 5.71320 5.78928 5.82180 5.84174 5.95271 6.27728 6.38575 6.50697 7.10753 7.39199 7.56796 7.83491 8.15925 8.36109 8.96682 9.30361 9.77435 10.57882 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.040740 B = 0.002646 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.120139 B =10579.617320 C =11251.587230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.546 5.546 10 C 0.426 3.574 11 O -0.601 6.601 12 C 0.109 3.891 13 N -0.704 5.704 14 C 0.583 3.417 15 O -0.529 6.529 16 C 0.017 3.983 17 C -0.075 4.075 18 C -0.218 4.218 19 S 0.126 5.874 20 C -0.191 4.191 21 C -0.112 4.112 22 C 0.063 3.937 23 N -0.538 5.538 24 H 0.423 0.577 25 H 0.275 0.725 26 H 0.397 0.603 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.406 0.594 30 H 0.157 0.843 31 H 0.172 0.828 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.904 -19.624 0.004 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.436 4.436 8 H 0.124 0.876 9 N -0.180 5.180 10 C 0.211 3.789 11 O -0.488 6.488 12 C -0.018 4.018 13 N -0.357 5.357 14 C 0.369 3.631 15 O -0.405 6.405 16 C -0.098 4.098 17 C -0.106 4.106 18 C -0.339 4.339 19 S 0.385 5.615 20 C -0.327 4.327 21 C -0.145 4.145 22 C -0.056 4.056 23 N -0.141 5.141 24 H 0.262 0.738 25 H 0.085 0.915 26 H 0.231 0.769 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.244 0.756 30 H 0.175 0.825 31 H 0.189 0.811 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.123 -20.805 0.007 21.991 hybrid contribution 1.168 2.863 -0.001 3.092 sum 8.291 -17.942 0.006 19.765 Atomic orbital electron populations 1.69619 1.06038 1.28575 1.48990 1.25349 0.95683 1.00017 0.96625 0.85746 0.79658 0.80715 0.77906 1.19124 1.20538 1.20534 1.19778 0.93493 0.81925 1.48368 0.87592 1.41797 1.09550 1.04470 1.62169 1.19681 0.88258 0.84959 0.85960 1.90486 1.13720 1.86804 1.57782 1.21025 0.91676 0.85398 1.03746 1.45582 1.11506 1.04665 1.73936 1.16900 0.87310 0.81439 0.77434 1.90870 1.14668 1.84355 1.50642 1.20356 0.81487 0.95088 1.12896 1.20390 0.96918 0.89040 1.04226 1.22674 0.97427 0.96993 1.16780 1.83877 0.97260 1.02278 1.78081 1.25213 1.00987 0.97540 1.08956 1.18928 0.95368 0.93892 1.06359 1.18359 0.93654 0.84225 1.09317 1.42066 1.05285 1.06582 1.60169 0.73822 0.91522 0.76945 0.89341 0.89336 0.75650 0.82499 0.81080 0.84070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.41 13.05 55.50 0.72 -22.68 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.15 29.55 -169.99 -5.02 15.12 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 7 C -0.31 -8.14 9.68 -14.93 -0.14 -8.29 16 8 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 9 N -0.55 -13.16 5.29 -10.96 -0.06 -13.22 16 10 C 0.43 9.43 7.85 -10.99 -0.09 9.34 16 11 O -0.60 -14.80 15.24 5.54 0.08 -14.71 16 12 C 0.11 1.92 6.15 -5.19 -0.03 1.89 16 13 N -0.70 -11.30 5.52 -62.87 -0.35 -11.65 16 14 C 0.58 9.29 7.78 -12.96 -0.10 9.19 16 15 O -0.53 -9.77 16.86 5.15 0.09 -9.69 16 16 C 0.02 0.23 7.01 -82.10 -0.58 -0.34 16 17 C -0.08 -0.99 10.60 -38.95 -0.41 -1.40 16 18 C -0.22 -2.66 7.26 -38.67 -0.28 -2.94 16 19 S 0.13 1.17 23.31 -107.50 -2.51 -1.34 16 20 C -0.19 -1.50 11.13 28.86 0.32 -1.18 16 21 C -0.11 -1.01 10.16 -40.84 -0.42 -1.43 16 22 C 0.06 0.73 7.67 -84.00 -0.64 0.09 16 23 N -0.54 -6.29 6.14 -7.34 -0.05 -6.33 16 24 H 0.42 4.13 8.14 -40.82 -0.33 3.79 16 25 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 26 H 0.40 9.19 7.90 -40.82 -0.32 8.87 16 27 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 28 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 29 H 0.41 6.24 6.51 -40.82 -0.27 5.97 16 30 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 31 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 305.56 15.07 4.60 4.60 Total: -1.00 -31.15 305.56 -7.49 -38.64 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -2.55 Total: 15.74 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -2.47 Total: 5.51 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.27 Total: -53.88 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: 0.17 Total: -24.40 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.51 Total: -1.34 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.15 -7.49 -38.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344189146.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.852 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds