Wall clock time and date at job start Tue Mar 31 2020 03:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86805 * 119.99858 * 2 1 4 4 H 1.48501 * 109.46910 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47241 * 300.00122 * 3 2 1 6 6 H 1.48498 * 109.46842 * 60.00234 * 3 2 1 7 7 C 1.38947 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00400 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00077 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00062 * 180.02562 * 9 7 2 11 11 O 1.21298 * 120.00224 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99767 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.46923 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00328 * 179.97438 * 13 12 10 15 15 O 1.21739 * 119.99660 * 0.02562 * 14 13 12 16 16 C 1.46449 * 120.00436 * 180.02562 * 14 13 12 17 17 C 1.37472 * 125.80684 * 180.58325 * 16 14 13 18 18 C 1.40657 * 107.55602 * 180.02562 * 17 16 14 19 19 S 1.76023 * 142.39754 * 179.34221 * 18 17 16 20 20 C 1.75594 * 91.31118 * 180.02562 * 19 18 17 21 21 C 1.32778 * 110.47257 * 359.97438 * 20 19 18 22 22 C 1.38244 * 108.03129 * 359.60893 * 18 17 16 23 23 N 1.37916 * 125.80579 * 0.02562 * 16 14 13 24 24 H 0.97001 * 125.68258 * 0.07122 * 23 16 14 25 25 H 0.96992 * 119.99794 * 359.97438 * 1 2 3 26 26 H 0.96997 * 120.00001 * 0.02562 * 9 7 2 27 27 H 1.08998 * 109.47361 * 60.00015 * 12 10 9 28 28 H 1.08996 * 109.47022 * 299.99526 * 12 10 9 29 29 H 0.97002 * 120.00426 * 359.97438 * 13 12 10 30 30 H 1.08000 * 126.22004 * 359.39042 * 17 16 14 31 31 H 1.07999 * 124.76223 * 180.02562 * 20 19 18 32 32 H 1.08002 * 122.15800 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3907 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1959 -5.9764 -0.0016 14 6 1.7467 -7.2471 -0.0017 15 8 0.5498 -7.4696 -0.0018 16 6 2.6984 -8.3603 -0.0016 17 6 2.3737 -9.6960 -0.0130 18 6 3.5765 -10.4251 -0.0078 19 16 4.2124 -12.0665 -0.0009 20 6 5.8638 -11.4698 0.0017 21 6 5.8779 -10.1421 -0.0030 22 6 4.6238 -9.5228 -0.0023 23 7 4.0729 -8.2467 -0.0010 24 1 4.5719 -7.4149 0.0005 25 1 -0.4849 0.8400 0.0004 26 1 0.3535 -2.3907 -0.0005 27 1 0.6175 -4.9205 -0.8913 28 1 0.6169 -4.9209 0.8886 29 1 3.1496 -5.7992 -0.0019 30 1 1.3763 -10.1103 -0.0143 31 1 6.7445 -12.0950 0.0057 32 1 6.7983 -9.5770 -0.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344189146.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:16 Heat of formation + Delta-G solvation = -27.619912 kcal Electronic energy + Delta-G solvation = -19543.874034 eV Core-core repulsion = 16209.755244 eV Total energy + Delta-G solvation = -3334.118790 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.42583 -40.79579 -39.79002 -36.34559 -36.24476 -35.44940 -33.41630 -32.01932 -30.37262 -28.59128 -26.50902 -24.41836 -23.38246 -21.60611 -21.41963 -20.96515 -20.10055 -19.75530 -17.97865 -17.35815 -16.98745 -16.94920 -16.44664 -16.35135 -15.98003 -15.79505 -15.16228 -15.15592 -15.02520 -14.61135 -14.06369 -13.84244 -13.67510 -13.57798 -12.94140 -12.83283 -12.55886 -12.47443 -12.12942 -11.76211 -11.60920 -11.50498 -10.79124 -10.61917 -10.41249 -10.12675 -9.13343 -8.65355 -8.53960 -6.04324 -0.28153 0.57747 0.82062 1.14574 1.33118 1.41782 1.55192 1.69374 1.76859 1.85803 1.95216 2.14728 2.28212 3.04808 3.13385 3.63936 3.80239 3.98892 4.15404 4.35334 4.37371 4.41185 4.53045 4.75722 4.92689 5.03251 5.07920 5.35992 5.41560 5.53359 5.88315 6.19828 6.36007 6.44285 6.88267 7.00440 7.40107 7.89752 8.63050 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.040740 B = 0.002646 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.120139 B =10579.617320 C =11251.587230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.557 5.557 10 C 0.432 3.568 11 O -0.625 6.625 12 C 0.120 3.880 13 N -0.703 5.703 14 C 0.590 3.410 15 O -0.559 6.559 16 C -0.009 4.009 17 C -0.076 4.076 18 C -0.253 4.253 19 S 0.139 5.861 20 C -0.166 4.166 21 C -0.133 4.133 22 C 0.069 3.931 23 N -0.535 5.535 24 H 0.429 0.571 25 H 0.280 0.720 26 H 0.400 0.600 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.410 0.590 30 H 0.158 0.842 31 H 0.209 0.791 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.486 -20.690 0.007 22.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.192 5.192 10 C 0.219 3.781 11 O -0.514 6.514 12 C -0.007 4.007 13 N -0.356 5.356 14 C 0.378 3.622 15 O -0.438 6.438 16 C -0.123 4.123 17 C -0.107 4.107 18 C -0.372 4.372 19 S 0.398 5.602 20 C -0.302 4.302 21 C -0.165 4.165 22 C -0.052 4.052 23 N -0.138 5.138 24 H 0.270 0.730 25 H 0.090 0.910 26 H 0.234 0.766 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.248 0.752 30 H 0.176 0.824 31 H 0.226 0.774 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 8.698 -21.874 0.010 23.540 hybrid contribution 0.769 2.994 -0.002 3.091 sum 9.467 -18.880 0.008 21.121 Atomic orbital electron populations 1.69681 1.07013 1.29654 1.49141 1.26137 0.96533 1.02716 0.95720 0.84812 0.78145 0.76720 0.78317 1.19389 1.19653 1.19643 1.19767 0.92966 0.83468 1.50388 0.89514 1.41840 1.09666 1.04589 1.63116 1.20350 0.88104 0.85860 0.83786 1.90464 1.15114 1.87514 1.58274 1.20873 0.91473 0.83409 1.04942 1.45525 1.11383 1.04438 1.74215 1.17080 0.87273 0.81511 0.76363 1.90843 1.16013 1.84743 1.52216 1.19971 0.82138 0.94405 1.15777 1.20545 0.97638 0.89195 1.03361 1.22965 0.97207 0.98924 1.18126 1.83867 0.98155 1.00464 1.77672 1.25744 1.01290 0.97469 1.05698 1.19217 0.95236 0.94498 1.07560 1.18885 0.94701 0.83866 1.07731 1.41998 1.04569 1.07215 1.60063 0.73033 0.91011 0.76603 0.88108 0.88100 0.75210 0.82393 0.77402 0.81638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.92 13.05 21.66 0.28 -47.64 16 2 C -0.01 -0.52 5.50 84.92 0.47 -0.06 16 3 Si 1.00 41.08 29.55 68.60 2.03 43.10 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.34 -18.18 9.68 84.04 0.81 -17.37 16 8 H 0.09 4.94 7.16 -2.91 -0.02 4.92 16 9 N -0.56 -27.29 5.29 -306.98 -1.62 -28.92 16 10 C 0.43 19.31 7.85 87.66 0.69 19.99 16 11 O -0.63 -31.16 15.24 -3.08 -0.05 -31.21 16 12 C 0.12 4.24 6.15 85.63 0.53 4.76 16 13 N -0.70 -22.56 5.52 -471.02 -2.60 -25.16 16 14 C 0.59 18.92 7.78 86.38 0.67 19.59 16 15 O -0.56 -20.91 16.86 -4.47 -0.08 -20.98 16 16 C -0.01 -0.24 7.01 40.15 0.28 0.05 16 17 C -0.08 -2.02 10.60 22.68 0.24 -1.78 16 18 C -0.25 -5.89 7.26 22.86 0.17 -5.72 16 19 S 0.14 2.29 23.31 -56.49 -1.32 0.97 16 20 C -0.17 -2.01 11.13 66.64 0.74 -1.27 16 21 C -0.13 -2.01 10.16 21.49 0.22 -1.79 16 22 C 0.07 1.48 7.67 38.40 0.29 1.77 16 23 N -0.54 -12.20 6.14 -177.14 -1.09 -13.28 16 24 H 0.43 8.18 8.14 -92.71 -0.75 7.42 16 25 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 26 H 0.40 18.81 7.90 -92.71 -0.73 18.07 16 27 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 28 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 29 H 0.41 12.62 6.51 -92.71 -0.60 12.01 16 30 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 31 H 0.21 0.93 8.06 -2.91 -0.02 0.91 16 32 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -66.73 305.56 -0.20 -66.93 By element: Atomic # 1 Polarization: 38.85 SS G_CDS: -0.87 Total: 37.98 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: 5.11 Total: 18.19 kcal Atomic # 7 Polarization: -109.97 SS G_CDS: -5.03 Total: -114.99 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -0.12 Total: -52.19 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.10 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -1.32 Total: 0.97 kcal Total: -66.73 -0.20 -66.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344189146.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.315 kcal (2) G-P(sol) polarization free energy of solvation -66.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds